BAC Information

Click to search

BAC

Clone NameB6Ng01-194L20
Chromosome13 (Build37)
Map Location 20,139,987 - 20,346,740
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneAmph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194L20.bB6Ng01-194L20.g
ACCGA017352GA017353
length9501,094
definitionB6Ng01-194L20.b B6Ng01-194L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,139,987 - 20,140,933)(20,345,647 - 20,346,740)
sequence
gaattcctcatcacggccacaactgggcaggcatctgtgcaaggcaagca
tccagagaaaggctgaaactcacggtatgaactgaggtagatgtgctagt
agaatccgtgaagtaaaataaaggtccagagaatctaagaagctcttgca
caagtcatcagggccattttgcagaaggttctgaaagccatcgtttgtct
gtgactttcactttccccaaagccttgttggtgaggatggaaatcgataa
caaagtaagcttgaattcttttggttcatagactggtgagtcaagtggtt
agaagacacatctcccacctcagaatgatcgtctattacatgactaagtg
gcccaggataaaaaccacaattaaggtgattcatgcccacaaaccattct
gttgagacagaagtgaaaatccactcagagtctgtctgctccacgcatgg
gagaattgcagagagccaaagtagcagctttgcagacacatagaaggctg
aatgtgattgttcttggaaaggagggactgagacacctccaaggggaaag
tgtagcccccactcctgaaaaggggggctggtggacagggtgagtagttg
gcgcccctgccaagcaggcaccagcaactgggagaatattcccgggcggc
agccagccgagagatctattcaattaccggagattccttgccaaagaggt
tttcaccagttccactatttatcaagagaactggaccttactcaaaagcc
acctttgcaaattgtcattaaaggagctggctgagctagtgatgtctgct
gcctgtgacttgggaactcttctctgagttacccattttctcttagctgt
agtctccccctcgaaagtgtaatccctttctcccgcacttcttcttctgg
tttcaaaggcattccatttaagggattatgcaaaattcagaactcaattg

gaattcactttacttttaagaaaaatggctttttcttttccttttaattt
gagtaaaagatcagaaaactgtctggggatcaaataaatcacctgagatg
tgggattggcaaaggggagaaagaggccttggggttgcatgcctacttcc
ttagtcttcaaaaacagcatggctttgattttatgcaaaacagtaaggga
acacagacaaatcccaagagatgtcctctctttccaggaaagtggcatga
tgggaatgtggaagaaaaatgcaaaagagaaggcatccaagatcgggtct
cctgctgcttaaactgtctgaaacttgacaggacatgtcaagttgcaatg
gctgaatacagggattgctatgttaattagtgttcttttgaaaataaaaa
taagtcctgagatgtactgctcacgtataaaatgtattctttgttcacaa
ggaacatctggtgttaatatcctctctcagtgtaaatgagcgccatgata
tgactaagacctgcctttgacaatctggagctaggcataggggttactct
gaatacaacagcaggctatgacaatccgtggaggcaggcagtaggatagg
tgagacgtgagaatcttagcaaggtatggacattcttttcttgacaaaga
aaagtggtagtggtcctttgatgagtgttacaggctgaactatgacctcc
ccaaaattcctatgtagaagctgcaacctccgggactttaggatggagct
tcaactggagacaggatcttgcaaaggctgattacttcagaataagggca
tttcagatgggatctaatccaatctggcaggtgtctctgagaggaccatg
tctgaatacgaggagatactaggatgtataggcattatggagaaaggcca
catgagaacacagggagaaggcagcccatctgtatgggtaaagataggac
cttcagaagaaacaaaccatagtacaccttccagccttcagaagggggag
aggagcatttttgtgcttaaccagtctctggattggtttatgactcttag
ctatgggacaggtaaatggagagggtctgcattgcaggcttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20139987_20140933
seq2: B6Ng01-194L20.b_51_1000

seq1  GAATTCCTCATCACGGCCACAACTGGGCAGGCATCTGTGCAAGGCAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCACGGCCACAACTGGGCAGGCATCTGTGCAAGGCAAGCA  50

seq1  TCCAGAGAAAGGCTGAAACTCACGGTATGAACTGAGGTAGATGTGCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGAAAGGCTGAAACTCACGGTATGAACTGAGGTAGATGTGCTAGT  100

seq1  AGAATCCGTGAAGTAAAATAAAGGTCCAGAGAATCTAAGAAGCTCTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCGTGAAGTAAAATAAAGGTCCAGAGAATCTAAGAAGCTCTTGCA  150

seq1  CAAGTCATCAGGGCCATTTTGCAGAAGGTTCTGAAAGCCATCGTTTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATCAGGGCCATTTTGCAGAAGGTTCTGAAAGCCATCGTTTGTCT  200

seq1  GTGACTTTCACTTTCCCCAAAGCCTTGTTGGTGAGGATGGAAATCGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTTCACTTTCCCCAAAGCCTTGTTGGTGAGGATGGAAATCGATAA  250

seq1  CAAAGTAAGCTTGAATTCTTTTGGTTCATAGACTGGTGAGTCAAGTGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAAGCTTGAATTCTTTTGGTTCATAGACTGGTGAGTCAAGTGGTT  300

seq1  AGAAGACACATCTCCCACCTCAGAATGATCGTCTATTACATGACTAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACACATCTCCCACCTCAGAATGATCGTCTATTACATGACTAAGTG  350

seq1  GCCCAGGATAAAAACCACAATTAAGGTGATTCATGCCCACAAACCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGATAAAAACCACAATTAAGGTGATTCATGCCCACAAACCATTCT  400

seq1  GTTGAGACAGAAGTGAAAATCCACTCAGAGTCTGTCTGCTCCACGCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGACAGAAGTGAAAATCCACTCAGAGTCTGTCTGCTCCACGCATGG  450

seq1  GAGAATTGCAGAGAGCCAAAGTAGCAGCTTTGCAGACACATAGAAGGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGCAGAGAGCCAAAGTAGCAGCTTTGCAGACACATAGAAGGCTG  500

seq1  AATGTGATTGTTCTTGGAAAGGAGGGACTGAGACACCTCCAAGGGGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATTGTTCTTGGAAAGGAGGGACTGAGACACCTCCAAGGGGAAAG  550

seq1  TGTAGCCCCCACTCCTGAAAAGGGGGGCTGGTGGACAGGGTGAGTAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCCCCACTCCTGAAAAGGGGGGCTGGTGGACAGGGTGAGTAGTTG  600

seq1  GCGCCCCTGCCAAGCAGGCACCAGCAACTGGGAGAATATTCCCGGGCGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCCTGCCAAGCAGGCACCAGCAACTGGGAGAATATTCCCGGGCGGC  650

seq1  AGCCAGCCGAGAGATCTATTCAATTACCGGAGATTCCTTGCC-AAGAGGT  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCCAGCCGAGAGATCTATTCAATTACCGGAGATTCCTTGCCAAAGAGGT  700

seq1  TTTCACCAGTTCCACTATTTATCAAGAGAACTGGACCTTACTCAAAAGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCAGTTCCACTATTTATCAAGAGAACTGGACCTTACTCAAAAGCC  750

seq1  ACCTTTGCAAATTGTCATTAAAGGAGCTGGCTGAGCTAGTGATGTCTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGCAAATTGTCATTAAAGGAGCTGGCTGAGCTAGTGATGTCTGCT  800

seq1  GCCTGTGACTTGGGAACTCTTCTCTGAGTTACCCATTTTCTCTTAGCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGACTTGGGAACTCTTCTCTGAGTTACCCATTTTCTCTTAGCTGT  850

seq1  AGTCTCCCCCTCGAAGGTGTAATCCC-TTCTCCCGCAACTCTCCTTCTGG  898
      ||||||||||||||| |||||||||| ||||||||||  ||| |||||||
seq2  AGTCTCCCCCTCGAAAGTGTAATCCCTTTCTCCCGCACTTCTTCTTCTGG  900

seq1  TTTCAAAGGCATTCCATTT-AGGGATTATGC-AAATTCAGGAGCTCAATG  946
      ||||||||||||||||||| ||||||||||| ||||||| || |||||| 
seq2  TTTCAAAGGCATTCCATTTAAGGGATTATGCAAAATTCA-GAACTCAATT  949

seq1  G  947
      |
seq2  G  950

seq1: chr13_20345647_20346740
seq2: B6Ng01-194L20.g_67_1160 (reverse)

seq1  ATGAAGCCTGCATATCCAGACCCTCTCCATTTTACTGTCCCATAGCTAAG  50
      |||||||||||| || ||||||||||||||||  ||||||||||||||||
seq2  ATGAAGCCTGCA-ATGCAGACCCTCTCCATTTACCTGTCCCATAGCTAAG  49

seq1  AGTTCCATAACACAATTCCAGAGACTGGTTAAGCAACAAAAATGCTCCTC  100
      |||  ||||| || | |||||||||||||||||| |||||||||||||| 
seq2  AGT--CATAA-ACCAATCCAGAGACTGGTTAAGC-ACAAAAATGCTCCT-  94

seq1  CTCCCCCTTTCTGAAGGCTGGAAGGTGTTACTATGGTTTGTTTCTTCTG-  149
      ||||||| ||||||||||||||||||| ||||||||||||||||||||| 
seq2  CTCCCCC-TTCTGAAGGCTGGAAGGTG-TACTATGGTTTGTTTCTTCTGA  142

seq1  AGGT-CTATCTTTA-CCATACAGAT-GGCTGCCTTCTCCCTGTGTTCTCA  196
      |||| ||||||||| |||||||||| ||||||||||||||||||||||||
seq2  AGGTCCTATCTTTACCCATACAGATGGGCTGCCTTCTCCCTGTGTTCTCA  192

seq1  TGTG--CCTTCTCCAT-ATGCCTATACATCCTAGTATCTCCTCGTATTCA  243
      ||||  | |||||||| |||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTTCTCCATAATGCCTATACATCCTAGTATCTCCTCGTATTCA  242

seq1  GACATGGTCCTCTCAGAGACACCTGCCAGATTGGATTAGATCCCATCTG-  292
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACATGGTCCTCTCAGAGACACCTGCCAGATTGGATTAGATCCCATCTGA  292

seq1  AATGCCCTTATTCTGAAGTAATCAGCCTTTGCAAGATCCTGTCTCCAGTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTTATTCTGAAGTAATCAGCCTTTGCAAGATCCTGTCTCCAGTT  342

seq1  GAAGCTCCATCCTAAAGTCCCGGAGGTTGCAGCTTCTACATAGGAATTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCATCCTAAAGTCCCGGAGGTTGCAGCTTCTACATAGGAATTTT  392

seq1  GGGGAGGTCATAGTTCAGCCTGTAACACTCATCAAAGGACCACTACCACT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTCATAGTTCAGCCTGTAACACTCATCAAAGGACCACTACCACT  442

seq1  TTTCTTTGTCAAGAAAAGAATGTCCATACCTTGCTAAGATTCTCACGTCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTCAAGAAAAGAATGTCCATACCTTGCTAAGATTCTCACGTCT  492

seq1  CACCTATCCTACTGCCTGCCTCCACGGATTGTCATAGCCTGCTGTTGTAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATCCTACTGCCTGCCTCCACGGATTGTCATAGCCTGCTGTTGTAT  542

seq1  TCAGAGTAACCCCTATGCCTAGCTCCAGATTGTCAAAGGCAGGTCTTAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTAACCCCTATGCCTAGCTCCAGATTGTCAAAGGCAGGTCTTAGT  592

seq1  CATATCATGGCGCTCATTTACACTGAGAGAGGATATTAACACCAGATGTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATGGCGCTCATTTACACTGAGAGAGGATATTAACACCAGATGTT  642

seq1  CCTTGTGAACAAAGAATACATTTTATACGTGAGCAGTACATCTCAGGACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGAACAAAGAATACATTTTATACGTGAGCAGTACATCTCAGGACT  692

seq1  TATTTTTATTTTCAAAAGAACACTAATTAACATAGCAATCCCTGTATTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTTCAAAAGAACACTAATTAACATAGCAATCCCTGTATTCA  742

seq1  GCCATTGCAACTTGACATGTCCTGTCAAGTTTCAGACAGTTTAAGCAGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCAACTTGACATGTCCTGTCAAGTTTCAGACAGTTTAAGCAGCA  792

seq1  GGAGACCCGATCTTGGATGCCTTCTCTTTTGCATTTTTCTTCCACATTCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCGATCTTGGATGCCTTCTCTTTTGCATTTTTCTTCCACATTCC  842

seq1  CATCATGCCACTTTCCTGGAAAGAGAGGACATCTCTTGGGATTTGTCTGT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCCACTTTCCTGGAAAGAGAGGACATCTCTTGGGATTTGTCTGT  892

seq1  GTTCCCTTACTGTTTTGCATAAAATCAAAGCCATGCTGTTTTTGAAGACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTACTGTTTTGCATAAAATCAAAGCCATGCTGTTTTTGAAGACT  942

seq1  AAGGAAGTAGGCATGCAACCCCAAGGCCTCTTTCTCCCCTTTGCCAATCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTAGGCATGCAACCCCAAGGCCTCTTTCTCCCCTTTGCCAATCC  992

seq1  CACATCTCAGGTGATTTATTTGATCCCCAGACAGTTTTCTGATCTTTTAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCAGGTGATTTATTTGATCCCCAGACAGTTTTCTGATCTTTTAC  1042

seq1  TCAAATTAAAAGGAAAAGAAAAAGCCATTTTTCTTAAAAGTAAAGTGAAT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAAAGGAAAAGAAAAAGCCATTTTTCTTAAAAGTAAAGTGAAT  1092

seq1  TC  1094
      ||
seq2  TC  1094