BAC Information

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BAC

Clone NameB6Ng01-194P05
Chromosome13 (Build37)
Map Location 60,444,084 - 60,533,708
singlet/doubletdoublet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194P05.bB6Ng01-194P05.g
ACCGA017504GA017505
length1,1531,111
definitionB6Ng01-194P05.b B6Ng01-194P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,532,545 - 60,533,708)(60,444,084 - 60,445,198)
sequence
gaattcacgtctcaatgtccactgtgagctttcgctttccttttgtgcga
tcagaagaggtcaaagtggcacaggtcagacctttctcagcattgtcaca
gagattcccaagctgagaggcacaagcctggttctgtcgtggtgactatg
ggaagctgacatgctaatagactgattctagtgtatgagtttccattggc
tgctgtaacaaccaagataccttaacatatcaaaactttattctcttaca
gttttggaaaacagaagttcagagtcagggtgttgtgggaggacatcggt
ccttcctgaaggagccagacgtgaacactcttcttgcttatagcactgag
tcacttcccactgtgatttgtagctcctgcacacacaacgttcagcatcc
ctgttcctattaccatctcacttcttgtctttgtcaaatttctctttgct
tccctcttttaaggatccccatggctgcaatttaggtccactaaaattat
tcaggaaagactccctgaatataatcttagacacagacatgttttcaaat
aactcacttttatattatggaaggtctcaggccattattgaccttaccat
tctaaccctgagtttgtcatgatgtgtcatacgcatatgggggtaaaggg
gaaagcccgcaggcagggggccagcagatgagtgtctgcttgctcaccag
atctgggatgaaacgttataatcagactctacagaacaaacggctgaagc
ggtgcttgagcaacaccaagtcccacggtgaccacagcaccatgattgct
gctgaatttgtttatgagaggatcgaaagcagccatgtttgcgagctatg
ggtggttttcacatccaggaagctatgtagaaacagctgaggagaaatgc
attcccccagagtgtaaactgactttaagttcaaacagaccgcaaggcat
gacagtgaaaaaaaaatcttcccaggtcaggacttatgaaatgttttcaa
acgttcatcattggcactggggtcaaagagatgtcactgtgatttttctg
ctgatttaccctgcatttgtgtctgctagaccactaggtaatgaagagta
tcagcctgtaatcacttgaacctggtgcctggagagatccttcctcctga
ctt
gaattctgggcattctattcagagagattgactgaagtgaccaaagcgct
ggcttttaaccttataaaccagaggatatagcattacacttggatggaac
attcatttttctaaaaaagtcctgaactgcttttccatcctccagaagat
gaccttcaatggcccctgtgtgatgagtggaaacccaagctggttttccc
tggacatgtatgctggtcattcacagctccaactgtctcaggcagaattg
gagaaggccctgcctggggttcccacgtttggacagacctctctgcttac
tgtgggtgataagccaacatcaaagtcgttgtcttttgttgtatgaaatg
aacctttggtctctgctgcataataccaggtctcatgaaggtctcagggt
gcactggggcaggagaaacagtggggtgctctgtctggattcctcttcca
tcagaggggacagaatcggggtttttttttgccttatttagacagagatg
tgttttatcgtgacactgagcgtttgttagcacagagtgagagagagaca
gagtggctcacagtgttgagcccctttatcttgcattgtttatattccaa
aaataatttaattagctcaataaacaaaagcatttttgggtccataaaca
acaagagcctgggaagaaaaaaaaaatcaaatgttccaaagggcagaaaa
gaaaaatagaaaaagtcacattttattctgggccctccttcctctgtact
gtccatttgtacagcttcacacctgacaaacagcgagtgaaccgagaaag
gtatctgttctcattgttttgtactaagttaatgaagcctccgaagcctt
caaaacagactgatgtttaggctggctctgagtactgcggctgtgtctgc
cctcccttcattccctgtgtatttagtgggagggcacacatgtaccacac
caagcaagtggacgtcagaggatgcctttgggggagcttgacatttcctt
catcatgtggtctctggggatcaccccgtgtcaccagacttgccagcagc
acttatacactggagctagactgctgggcccagactgctgccttttaaga
ctcctccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60532545_60533708
seq2: B6Ng01-194P05.b_45_1197 (reverse)

seq1  AAGTCAGGAGG-AGGACCCTTCTCCA-GCACAAGG-TCCAGTGATTACA-  46
      ||||||||||| |||| |  |||||| |||| ||| || |||||||||| 
seq2  AAGTCAGGAGGAAGGATC--TCTCCAGGCACCAGGTTCAAGTGATTACAG  48

seq1  GCTGTATACTC-TCATTTCCTTGTGTGTCCTTAGCAG-CACAAATGCAGG  94
      |||| |||||| ||||| ||| ||| |||  |||||| ||||||||||||
seq2  GCTG-ATACTCTTCATTACCTAGTG-GTC--TAGCAGACACAAATGCAGG  94

seq1  GGTAAAATCAGCCAGAAAAATCACAGTGACATCCTCCTTTGACCCCAAGT  144
      |   ||||||| |||||||||||||||||||||   |||||||||| |||
seq2  G--TAAATCAG-CAGAAAAATCACAGTGACATC--TCTTTGACCCC-AGT  138

seq1  GGCCAAATGATGAACGTTTTGAAAACCATTTCAT-AGTCCTGACCCTGGG  193
      |  | ||||||||||| |||||||| |||||||| |||||||| ||||||
seq2  G--CCAATGATGAACG-TTTGAAAA-CATTTCATAAGTCCTGA-CCTGGG  183

seq1  AAGATTTTTTTTTTCACTGTTCATGCCTTGCGGTCTGTTTGAACTTAAAG  243
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGA-TTTTTTTTTCACTG-TCATGCCTTGCGGTCTGTTTGAACTTAAAG  231

seq1  TCAGTTTACACTCTGGGGGAATGCATTTCTCCTCAGCTGTTTCTACATAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTACACTCTGGGGGAATGCATTTCTCCTCAGCTGTTTCTACATAG  281

seq1  CTTCCTGGATGTGAAAACCA-CCATAGCTCGCAAACATGGCTGCTTTCGA  342
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTTCCTGGATGTGAAAACCACCCATAGCTCGCAAACATGGCTGCTTTCGA  331

seq1  TCCTCTCATAAACAAATTCAGCAGCAATCATGGTGCTGTGGTCACCGTGG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCATAAACAAATTCAGCAGCAATCATGGTGCTGTGGTCACCGTGG  381

seq1  GACTTGGTGTTGCTCAAGCACCGCTTCAGCCGTTTGTTCTGTAGAGTCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTGTTGCTCAAGCACCGCTTCAGCCGTTTGTTCTGTAGAGTCTG  431

seq1  ATTATAACGTTTCATCCCAGATCTGGTGAGCAAGCAGACACTCATCTGCT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACGTTTCATCCCAGATCTGGTGAGCAAGCAGACACTCATCTGCT  481

seq1  GGCCCCCTGCCTGCGGGCTTTCCCCTTTACCCCCATATGCGTATGACACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCTGCCTGCGGGCTTTCCCCTTTACCCCCATATGCGTATGACACA  531

seq1  TCATGACAAACTCAGGGTTAGAATGGTAAGGTCAATAATGGCCTGAGACC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAAACTCAGGGTTAGAATGGTAAGGTCAATAATGGCCTGAGACC  581

seq1  TTCCATAATATAAAAGTGAGTTATTTGAAAACATGTCTGTGTCTAAGATT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAATATAAAAGTGAGTTATTTGAAAACATGTCTGTGTCTAAGATT  631

seq1  ATATTCAGGGAGTCTTTCCTGAATAATTTTAGTGGACCTAAATTGCAGCC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGGGAGTCTTTCCTGAATAATTTTAGTGGACCTAAATTGCAGCC  681

seq1  ATGGGGATCCTTAAAAGAGGGAAGCAAAGAGAAATTTGACAAAGACAAGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGATCCTTAAAAGAGGGAAGCAAAGAGAAATTTGACAAAGACAAGA  731

seq1  AGTGAGATGGTAATAGGAACAGGGATGCTGAACGTTGTGTGTGCAGGAGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGGTAATAGGAACAGGGATGCTGAACGTTGTGTGTGCAGGAGC  781

seq1  TACAAATCACAGTGGGAAGTGACTCAGTGCTATAAGCAAGAAGAGTGTTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATCACAGTGGGAAGTGACTCAGTGCTATAAGCAAGAAGAGTGTTC  831

seq1  ACGTCTGGCTCCTTCAGGAAGGACCGATGTCCTCCCACAACACCCTGACT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGGCTCCTTCAGGAAGGACCGATGTCCTCCCACAACACCCTGACT  881

seq1  CTGAACTTCTGTTTTCCAAAACTGTAAGAGAATAAAGTTTTGATATGTTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTCTGTTTTCCAAAACTGTAAGAGAATAAAGTTTTGATATGTTA  931

seq1  AGGTATCTTGGTTGTTACAGCAGCCAATGGAAACTCATACACTAGAATCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTTGGTTGTTACAGCAGCCAATGGAAACTCATACACTAGAATCA  981

seq1  GTCTATTAGCATGTCAGCTTCCCATAGTCACCACGACAGAACCAGGCTTG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTAGCATGTCAGCTTCCCATAGTCACCACGACAGAACCAGGCTTG  1031

seq1  TGCCTCTCAGCTTGGGAATCTCTGTGACAATGCTGAGAAAGGTCTGACCT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTCAGCTTGGGAATCTCTGTGACAATGCTGAGAAAGGTCTGACCT  1081

seq1  GTGCCACTTTGACCTCTTCTGATCGCACAAAAGGAAAGCGAAAGCTCACA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTTGACCTCTTCTGATCGCACAAAAGGAAAGCGAAAGCTCACA  1131

seq1  GTGGACATTGAGACGTGAATTC  1164
      ||||||||||||||||||||||
seq2  GTGGACATTGAGACGTGAATTC  1153

seq1: chr13_60444084_60445198
seq2: B6Ng01-194P05.g_63_1173

seq1  GAATTCTGGGCATTCTATTCAGAGAGATTGACTGAAGTGACCAAAGCGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCATTCTATTCAGAGAGATTGACTGAAGTGACCAAAGCGCT  50

seq1  GGCTTTTAACCTTATAAACCAGAGGATATAGCATTACACTTGGATGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAACCTTATAAACCAGAGGATATAGCATTACACTTGGATGGAAC  100

seq1  ATTCATTTTTCTAAAAAAGTCCTGAACTGCTTTTCCATCCTCCAGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTCTAAAAAAGTCCTGAACTGCTTTTCCATCCTCCAGAAGAT  150

seq1  GACCTTCAATGGCCCCTGTGTGATGAGTGGAAACCCAAGCTGGTTTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAATGGCCCCTGTGTGATGAGTGGAAACCCAAGCTGGTTTTCCC  200

seq1  TGGACATGTATGCTGGTCATTCACAGCTCCAACTGTCTCAGGCAGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATGTATGCTGGTCATTCACAGCTCCAACTGTCTCAGGCAGAATTG  250

seq1  GAGAAGGCCCTGCCTGGGGTTCCCACGTTTGGACAGACCTCTCTGCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCCCTGCCTGGGGTTCCCACGTTTGGACAGACCTCTCTGCTTAC  300

seq1  TGTGGGTGATAAGCCAACATCAAAGTCGTTGTCTTTTGTTGTATGAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGTGATAAGCCAACATCAAAGTCGTTGTCTTTTGTTGTATGAAATG  350

seq1  AACCTTTGGTCTCTGCTGCATAATACCAGGTCTCATGAAGGTCTCAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGGTCTCTGCTGCATAATACCAGGTCTCATGAAGGTCTCAGGGT  400

seq1  GCACTGGGGCAGGAGAAACAGTGGGGTGCTCTGTCTGGATTCCTCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGGGCAGGAGAAACAGTGGGGTGCTCTGTCTGGATTCCTCTTCCA  450

seq1  TCAGAGGGGACAGAATCGGGGTTTTTTTTTGCCTTATTTAGACAGAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGGACAGAATCGGGGTTTTTTTTTGCCTTATTTAGACAGAGATG  500

seq1  TGTTTTATCGTGACACTGAGCGTTTGTTAGCACAGAGTGAGAGAGAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATCGTGACACTGAGCGTTTGTTAGCACAGAGTGAGAGAGAGACA  550

seq1  GAGTGGCTCACAGTGTTGAGCCCCTTTATCTTGCATTGTTTATATTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTCACAGTGTTGAGCCCCTTTATCTTGCATTGTTTATATTCCAA  600

seq1  AAATAATTTAATTAGCTCAATAAACAAAAGCATTTTTGGGTCCATAAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTAATTAGCTCAATAAACAAAAGCATTTTTGGGTCCATAAACA  650

seq1  ACAAGAGCCTGGGAAGAAAAAAAAAATCAAATGTTCCAAAGGGCAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGCCTGGGAAGAAAAAAAAAATCAAATGTTCCAAAGGGCAGAAAA  700

seq1  GAAAAATAGAAAAAGTCACATTTTATTCTGGGCCCTCCTTCCTCTGTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGAAAAAGTCACATTTTATTCTGGGCCCTCCTTCCTCTGTACT  750

seq1  GTCCATTTGTACAGCTTCACACCTGACAAACAGCGAGTGAACCGAGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTGTACAGCTTCACACCTGACAAACAGCGAGTGAACCGAGAAAG  800

seq1  GTATCTGTTCTCATTGTTTTGTACTAAGTTAATGAAGCCTCCGAAGCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGTTCTCATTGTTTTGTACTAAGTTAATGAAGCCTCCGAAGCCTT  850

seq1  CAAAACAGACTGATGTTTAGGCTGGCTCTGAGTACTGCGGCTGTGTCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAGACTGATGTTTAGGCTGGCTCTGAGTACTGCGGCTGTGTCTGC  900

seq1  CCTCCCTTCATTCCCTGTGTATTTAGTGGGAGGGCACACATGTACCACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTCATTCCCTGTGTATTTAGTGGGAGGGCACACATGTACCACAC  950

seq1  CAAGCAAGTGGACGTCAGAGGATGCC-TTGGGGGAGC-TGACATTTCCTT  998
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CAAGCAAGTGGACGTCAGAGGATGCCTTTGGGGGAGCTTGACATTTCCTT  1000

seq1  CCATCATGTGGGCTCTGGGAATCAACCCCGTGTCACCAGACTTGGCAGCA  1048
       |||||||||| ||||||| ||| |||||||||||||||||||| |||| 
seq2  -CATCATGTGGTCTCTGGGGATC-ACCCCGTGTCACCAGACTTGCCAGC-  1047

seq1  AGCACCTTTATACACT-GAGCTAGACTGCT-GGCCCAGACTGCTGGCCTT  1096
      |||||  ||||||||| ||||||||||||| ||||||||||||| |||||
seq2  AGCAC--TTATACACTGGAGCTAGACTGCTGGGCCCAGACTGCT-GCCTT  1094

seq1  TTTAAAGGACT-CTCCAAAA  1115
      ||   | |||| ||||||||
seq2  TT---AAGACTCCTCCAAAA  1111