BAC Information

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BAC

Clone NameB6Ng01-197B20
Chromosome2 (Build37)13 (Build37)
Map Location 133,528,056 - 133,528,46610,592,143 - 10,593,303
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneChgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
Downstream geneHao1, Txndc13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197B20.bB6Ng01-197B20.g
ACCGA019067GA019068
length5601,182
definitionB6Ng01-197B20.b B6Ng01-197B20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,528,056 - 133,528,466)(10,592,143 - 10,593,303)
sequence
ccaagatacaagatacaatttgtgaaacacatgaaactcaagaagaacaa
atacaaaagtgtggacctttgctccttcttagaattgggaactaaacacc
catggaaggagttacagagacaaagattggagctgagacgaaaggatgga
ccatctagagactgccatacccagggatccatcccataatcagcccccaa
acactgacaccattgcacacactagcaagatgttgctgaaaggaccctga
tatagctgtctcttgtgaggctatgccgggacctagcaaacacagaagtg
gatgctcatagtcagctattggatggatcacagggcccccaatggaggag
ctagaaaaagtacccaaggagctaaaggggtctgcaaccctataggtgga
ataacaatatgaactaaccattaacccccggagctcatgtctctagctgc
atatgtatcagaagatggcctagttggccatcattgcaagttggcccatt
ggtcttgcaaactttatatgcctcagtacaggggaatgccagggccaaga
agtgggagtg

gaattcatcataaggcaaatggcatttaccttttaaaagtagaggagggg
gagggggcacatgtgtaaaacggcatgctgagcaagcctgattacccgag
ttcagttcccagaacccatggtgggaggaggaaaccaattcctgaaagtt
gtcctctgaactcatgtgttctatatagtgcatgttctccactctacctc
tctgtctctctgtctgcctctatctctctgtctgtgtctctgtctctctc
tctctctctttcacacacacacacacacacacacacattattagcaatga
taaattcgagtcattttaaaaattcaaattttggtacatgccatcaaccc
cagtacttgggggtagagacatggggtctgctctccaagcacagtctttg
gtacatagagagttggaaggtagcctaggctatgggagatttttgtctca
aaacaaacaaacaagaaaaaccaacatcaacatagtagggtcttgagtaa
aagatgatatctattggaatgttaaaatcatcacattctaaaattaatga
ataaaactaataagattttattaattaattatgaggggctttgaattgcc
atgatctaattcttcttaaaatgaactcacaggtgaactgcagtgcagta
tctgcagaacataaccttgatgttctgaatgtttgtgcatgccacagagc
agccctgacttatctttctgttgtctaaagagttatggccaacacttctt
ccagcatatgatccaataagaaatctgatatgtgagaaaccttgtagctt
tcagtatttcctttaaaacttctttgaaaactctttctggagccaacgaa
caaactaagcatggggcaggttgtgcgcttgtcggatttcaataaaaaat
attaacttctctagtcaaaatgttcacagcccatgccatattcctaagaa
aatgactcatattattagtgatacacttaactatatggcttaacttgtgc
tggagagatgaactatgaacacccatcaattagctcctatataaaggtga
gttaaggatcttgaaagtatcttagccaaaataagccaggaacctcacaa
acaaacagatcagagcctttctcaagctcttgcatcctggcataacttcc
actagatcgtcaagattgactcctctattgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_133528056_133528466
seq2: B6Ng01-197B20.b_203_612 (reverse)

seq1  CACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCAGATAAAGT  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAAGT  50

seq1  TTGCATGACCAATGGGCCTTTCTTTCCATTGATGGCCGACTAGGCCATTT  100
      ||||| ||||||||||||     || || |||||||| |||||||||| |
seq2  TTGCAAGACCAATGGGCC--AACTTGCAATGATGGCCAACTAGGCCATCT  98

seq1  TCTGATACATATGCAGCTAGAGACATGAGCTCTGGGGAGTACTGGGTAGT  150
      |||||||||||||||||||||||||||||||| ||||  || ||| ||||
seq2  TCTGATACATATGCAGCTAGAGACATGAGCTCCGGGGGTTAATGGTTAGT  148

seq1  TCAAATTGTTGTTCCACCTATAGGGTTGCAGGTCCCTTTAGCTCCTTGGT  200
      ||| |||||| ||||||||||||||||||||  |||||||||||||||| 
seq2  TCATATTGTTATTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGG  198

seq1  TACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTG  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTG  248

seq1  ACTGTGAGCATCCACTTCTGTGTTTGCTAGG-CCCGGCATAGTCTCACAA  299
      ||| ||||||||||||||||||||||||||| |||||||||| |||||||
seq2  ACTATGAGCATCCACTTCTGTGTTTGCTAGGTCCCGGCATAGCCTCACAA  298

seq1  GAGACAGCTATATCTGTGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAA  349
      |||||||||||||| | ||||||||||||| ||||||||||||| |||||
seq2  GAGACAGCTATATCAGGGTCCTTTCAGCAACATCTTGCTAGTGTGTGCAA  348

seq1  TGGTGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCTGGATATGGCA  399
      ||||||||| ||||||  |||||||||||||||||||||||| |||||||
seq2  TGGTGTCAGTGTTTGGGGGCTGATTATGGGATGGATCCCTGGGTATGGCA  398

seq1  GTCTCTAGATGG  411
      ||||||||||||
seq2  GTCTCTAGATGG  410


seq1: chr13_10592143_10593303
seq2: B6Ng01-197B20.g_65_1246 (reverse)

seq1  TCCAATAGAGGA--TGATATTGAAGATTTA-TGGAAGTTATGC--AGATG  45
      ||||||||||||    || |||| ||| || ||||||||||||   ||||
seq2  TCCAATAGAGGAGTCAATCTTGACGATCTAGTGGAAGTTATGCCAGGATG  50

seq1  --AGAGACTGAGAAAGGACTGT-ATCTG-TTGTTTGTGAGG-TCCTGGC-  89
        ||||  ||||||||| || | ||||| |||||||||||| ||||||| 
seq2  CAAGAGCTTGAGAAAGG-CTCTGATCTGTTTGTTTGTGAGGTTCCTGGCT  99

seq1  TATTTT-GCTAAGATACTTTC-AGATCCCTTAACTCACCTT--AATAGGA  135
      |||||| |||||||||||||| |||| ||||||||||||||   ||||||
seq2  TATTTTGGCTAAGATACTTTCAAGAT-CCTTAACTCACCTTTATATAGGA  148

seq1  GCTAAAATGATGGTTGTTCATAGTTCATCTCT-CAGCTACAGTT-AGCCA  183
      ||| || |||||| |||||||||||||||||| ||||   |||| |||||
seq2  GCT-AATTGATGGGTGTTCATAGTTCATCTCTCCAGCACAAGTTAAGCCA  197

seq1  TATAGTTAAGTGTATCACTAATAATATGAGTCA-TTTCTTAGGAATATGG  232
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATAGTTAAGTGTATCACTAATAATATGAGTCATTTTCTTAGGAATATGG  247

seq1  CATGGGCTGTGAACATTTTGACTAGAGAAGTTAATA-TTTTTATTGAAAT  281
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATGGGCTGTGAACATTTTGACTAGAGAAGTTAATATTTTTTATTGAAAT  297

seq1  CCGAC-AGCGCACAA-CTG-CCCATGCTTAGTTTGTTCGTTGGCTCCAGA  328
      ||||| ||||||||| ||| ||||||||||||||||||||||||||||||
seq2  CCGACAAGCGCACAACCTGCCCCATGCTTAGTTTGTTCGTTGGCTCCAGA  347

seq1  AAGAGTTTTCAAAGAAGTTTT-AAGGAAATACTGAAAGCTACAAGGTTTC  377
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGAGTTTTCAAAGAAGTTTTAAAGGAAATACTGAAAGCTACAAGGTTTC  397

seq1  TCACATATCAGATTTCTTATTGGATCATATGCTGGAAG-AGTGTTGGCCA  426
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCACATATCAGATTTCTTATTGGATCATATGCTGGAAGAAGTGTTGGCCA  447

seq1  TAACTCTTTAGACAACAGAAAGATAAGTCAGGGCTGCTCTGTGGCATGCA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTAGACAACAGAAAGATAAGTCAGGGCTGCTCTGTGGCATGCA  497

seq1  CAAACATTCAGAACATCAAGGTTATGTTCTGCAGATACTGCACTGCAGTT  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTCAGAACATCAAGGTTATGTTCTGCAGATACTGCACTGCAGTT  547

seq1  CACCTGTGAGTTCATTTTAAGAAGAATTAGATCATGGCAATTCAAAGCCC  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTGAGTTCATTTTAAGAAGAATTAGATCATGGCAATTCAAAGCCC  597

seq1  CTCATAATTAATTAATAAAATCTTATTAGTTTTATTCATTAATTTTAGAA  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAATTAATTAATAAAATCTTATTAGTTTTATTCATTAATTTTAGAA  647

seq1  TGTGATGATTTTAACATTCCAATAGATATCATCTTTTACTCAAGACCCTA  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGATTTTAACATTCCAATAGATATCATCTTTTACTCAAGACCCTA  697

seq1  CTATGTTGATGTTGGTTTTTCTTGTTTGTTTGTTTTGAGACAAAAATCTC  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGATGTTGGTTTTTCTTGTTTGTTTGTTTTGAGACAAAAATCTC  747

seq1  CCATAGCCTAGGCTACCTTCCAACTCTCTATGTACCAAAGACTGTGCTTG  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCCTAGGCTACCTTCCAACTCTCTATGTACCAAAGACTGTGCTTG  797

seq1  GAGAGCAGACCCCATGTCTCTACCCCCAAGTACTGGGGTTGATGGCATGT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGACCCCATGTCTCTACCCCCAAGTACTGGGGTTGATGGCATGT  847

seq1  ACCAAAATTTGAATTTTTAAAATGACTCGAATTTATCATTGCTAATAATG  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATTTGAATTTTTAAAATGACTCGAATTTATCATTGCTAATAATG  897

seq1  TGTGTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGAGAGAGACAGAGAC  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGAAAGAGAGAGAGAGAGAGACAGAGAC  947

seq1  ACAGACAGAGAGATAGAGGCAGACAGAGAGACAGAGAGGTAGAGTGGAGA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGAGAGATAGAGGCAGACAGAGAGACAGAGAGGTAGAGTGGAGA  997

seq1  ACATGCACTATATAGAACACATGAGTTCAGAGGACAACTTTCAGGAATTG  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACTATATAGAACACATGAGTTCAGAGGACAACTTTCAGGAATTG  1047

seq1  GTTTCCTCCTCCCACCATGGGTTCTGGGAACTGAACTCGGGTAATCAGGC  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTCCTCCCACCATGGGTTCTGGGAACTGAACTCGGGTAATCAGGC  1097

seq1  TTGCTCAGCATGCCGTTTTACACATGTGCCCCCTCCCCCTCCTCTACTTT  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGCATGCCGTTTTACACATGTGCCCCCTCCCCCTCCTCTACTTT  1147

seq1  TAAAAGGTAAATGCCATTTGCCTTATGATGAATTC  1161
      |||||||||||||||||||||||||||||||||||
seq2  TAAAAGGTAAATGCCATTTGCCTTATGATGAATTC  1182


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