BAC Information

Click to search

BAC

Clone NameB6Ng01-197M14
Chromosome13 (Build37)
Map Location 11,438,241 - 11,565,409
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039648
Downstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197M14.bB6Ng01-197M14.g
ACCGA019562GA019563
length1,0541,152
definitionB6Ng01-197M14.b B6Ng01-197M14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,438,241 - 11,439,293)(11,564,250 - 11,565,409)
sequence
gaattcctttaccacaggccaggccaatacaagggcttgttagtgctttt
agggtgaaaaaacacatggtttgaaggccctgtctgctatacatcagttc
atcaaggctcagagagagagctgtgaggactggggccttaattctagtca
tgagttggatttaatccatgattcatgaaaaatgcccccccccccccaca
cacactcattcctgaagttcactgattagatctggccacatatccaagag
gtatagtctgcaaacacttgaaatacaaagagatcagaatcatgtgttca
aggccagcctgggatacataataagatcctatttcaaatacagaaaagcc
cagttactttagccttttattttatacccactaagatgtgcttaactgcc
atcagtgcccatgaaacccgatttcaagttaaccacttagatctggcaaa
gacgcacacaaccctatcatcattgacaataaaacacgctgatggtttta
atgagggcaatcacgttgtgctaagtatgggtgaaggtagagtatgcttc
atttctatgacagggatgctgataatggtacttacacttacctttcatta
atctccaatagtctttacacctacaaatatctgaatcccatacatgagta
tcttaagattttggaaggagttattctcttttttttctcagttgaactgt
gtgtcttgtggggagacagaatgtactacataaagagaaagctaactctg
ccaggtatgatgaaccacatctttaatcctagcctatccctaggtatact
taggcatagcctagtgaggtatacagaacctctgtgagttcaaagtcagc
ttggtctacatagaatattttcaagccaactggggcttcacagtgaagcc
ttctctgcgttctatcacagtgaatcaccagactctagtttccctactgt
gagctaagctatagggcaattttcactgcatacgtatatgatatctttgt
gggtttatttgggggggggtgcatcatcccattagtgataattattttga
tatc

gaattccgagagagtgccaggcaggagacctgcctaggaagatgtgaaga
ggcagatacatggtacctgaacaaaggtaaccaactatgtggcagaatgc
aggttaaaaaaatgggctaagattctagtcagagaagagcctagctgtat
ggccaagtatttgtaaatatattttaggtccgagccttatttctgggagc
atggagctgggaggaaatgctgagttaacttctatattgcctaaaaataa
caaaacaactctcaactgagccacttcctcccattccacgtcctcactta
agtaaaatgctatgttgtgaagggtggacttccatccttaaaattgaagt
attttactgtgaaggcaccaatgtgaggaaattgtgtaaagtggttacag
gcttgatagaagccagacagcatgtgttttcaaacctaattctgttgtgt
cataactatgtgacttggtcaaagccacataatactctagagttttagat
ttatattatcttacttatgtgctttgcctgcacatatatgtgtatgacct
atgtttgtttggtgcgtgtgaaagccaaaaagagggcattgaatcctctg
taactggagctgtggatagtattaactaccacgtgggtgctgtgaactgt
acccagtaagtgctttttaaccactgagctatctctccaattccatcaga
gaatactctgactccctacttcacttggtttttgaagaattattaaataa
tacaaaagaatgagcatctaattattactcaatgtaattagagctgcaca
agtttttctcccccgtccactttatattttcaggtttgaggcaactttta
cattgccaagagagagggactgattacttaggtcattctctgtttcattt
gttttctctgtcatttctatgagcacgccttgaataactacactttatta
gatcctgagcagatataagtaaaactaccatggaaacatactttataata
aattctgctactcagcattcaatcttttcttctcagtgcccagaagtttg
gcttctcttattatccttttcccttttggaggtcttccaatttagtgcaa
aggttaggagtacgaatgaagggtttcatattcacactcattgctctcga
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_11438241_11439293
seq2: B6Ng01-197M14.b_44_1097

seq1  GAATTCCTTTACCACAGGCCAGGCCAATACAAGGGCTTGTTAGTGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACCACAGGCCAGGCCAATACAAGGGCTTGTTAGTGCTTTT  50

seq1  AGGGTGAAAAAACACATGGTTTGAAGGCCCTGTCTGCTATACATCAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAAAAAACACATGGTTTGAAGGCCCTGTCTGCTATACATCAGTTC  100

seq1  ATCAAGGCTCAGAGAGAGAGCTGTGAGGACTGGGGCCTTAATTCTAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGCTCAGAGAGAGAGCTGTGAGGACTGGGGCCTTAATTCTAGTCA  150

seq1  TGAGTTGGATTTAATCCATGATTCATGAAAAATGCCCCCCCCCCCCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGGATTTAATCCATGATTCATGAAAAATGCCCCCCCCCCCCCACA  200

seq1  CACACTCATTCCTGAAGTTCACTGATTAGATCTGGCCACATATCCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATTCCTGAAGTTCACTGATTAGATCTGGCCACATATCCAAGAG  250

seq1  GTATAGTCTGCAAACACTTGAAATACAAAGAGATCAGAATCATGTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTCTGCAAACACTTGAAATACAAAGAGATCAGAATCATGTGTTCA  300

seq1  AGGCCAGCCTGGGATACATAATAAGATCCTATTTCAAATACAGAAAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGGATACATAATAAGATCCTATTTCAAATACAGAAAAGCC  350

seq1  CAGTTACTTTAGCCTTTTATTTTATACCCACTAAGATGTGCTTAACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTTTAGCCTTTTATTTTATACCCACTAAGATGTGCTTAACTGCC  400

seq1  ATCAGTGCCCATGAAACCCGATTTCAAGTTAACCACTTAGATCTGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGCCCATGAAACCCGATTTCAAGTTAACCACTTAGATCTGGCAAA  450

seq1  GACGCACACAACCCTATCATCATTGACAATAAAACACGCTGATGGTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACACAACCCTATCATCATTGACAATAAAACACGCTGATGGTTTTA  500

seq1  ATGAGGGCAATCACGTTGTGCTAAGTATGGGTGAAGGTAGAGTATGCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGCAATCACGTTGTGCTAAGTATGGGTGAAGGTAGAGTATGCTTC  550

seq1  ATTTCTATGACAGGGATGCTGATAATGGTACTTACACTTACCTTTCATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGACAGGGATGCTGATAATGGTACTTACACTTACCTTTCATTA  600

seq1  ATCTCCAATAGTCTTTACACCTACAAATATCTGAATCCCATACATGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAATAGTCTTTACACCTACAAATATCTGAATCCCATACATGAGTA  650

seq1  TCTTAAGATTTTGGAAGGAGTTATTCTCTTTTTTTTCTCAGTTGAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGATTTTGGAAGGAGTTATTCTCTTTTTTTTCTCAGTTGAACTGT  700

seq1  GTGTCTTGTGGGGAGACAGAATGTACTACATAAAGAGAAAGCTAACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGTGGGGAGACAGAATGTACTACATAAAGAGAAAGCTAACTCTG  750

seq1  CCAGGTATGATGAACCACATCTTTAATCCTAGCCTATCCCTAGGTATACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATGATGAACCACATCTTTAATCCTAGCCTATCCCTAGGTATACT  800

seq1  TAGGCATAGCCTAGTGAGGTATACAGAACCTCTGTGAGTTCAAAGTCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATAGCCTAGTGAGGTATACAGAACCTCTGTGAGTTCAAAGTCAGC  850

seq1  TTGGTCTACATAGAATA-TTTCAAGCCAACTGGGGCTTCACAGTGAAGCC  899
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTGGTCTACATAGAATATTTTCAAGCCAACTGGGGCTTCACAGTGAAGCC  900

seq1  TTCTCTGCGTTCTATCACAGTGAATCACCAGACTCTAGTTTTCCCTACTG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCTCTGCGTTCTATCACAGTGAATCACCAGACTCTAG-TTTCCCTACTG  949

seq1  TGAGCTAAGCTATAGGGCAATTTTCACTGCATACGTATAATGATATCTTT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGAGCTAAGCTATAGGGCAATTTTCACTGCATACGTAT-ATGATATCTTT  998

seq1  GTGGGTTT-TATTGGGGGGGGTGCATCATCCCATTAGTGATTATTA-TAT  1047
      |||||||| | | |||||||||||||||||||||||||||| |||| | |
seq2  GTGGGTTTATTTGGGGGGGGGTGCATCATCCCATTAGTGATAATTATTTT  1048

seq1  GATATC  1053
      ||||||
seq2  GATATC  1054


seq1: chr13_11564250_11565409
seq2: B6Ng01-197M14.g_71_1222 (reverse)

seq1  TCTCTGAGAGCAATGAGTGGTGATATGAAACCTTCCTTTTCCTTTCCTTC  50
      |||| ||||||||||||||   |||||||||| | | ||  | | |  ||
seq2  TCTC-GAGAGCAATGAGTGTGAATATGAAACCCTTCATT--CGTAC--TC  45

seq1  CTATACCTTTGCACTAAAATGTGGGAAAGACCTTCCAAAAGGGAAAAGGA  100
      ||| |||||||||||||| |    | |||||| |||||||||||||||||
seq2  CTA-ACCTTTGCACTAAATT----GGAAGACC-TCCAAAAGGGAAAAGGA  89

seq1  TTAATAGAGAGGCCAAAC-TCTGGGCACTGAGA--GAAAGATTGAATGCT  147
      | |  ||||| ||||||| ||||||||||||||   ||||||||||||||
seq2  TAATAAGAGAAGCCAAACTTCTGGGCACTGAGAAGAAAAGATTGAATGCT  139

seq1  GAGTAGCAGAATTTATTATAAAGTATGTTTCCATGGTAGTTTTTACTTAT  197
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGTAGCAGAATTTATTATAAAGTATGTTTCCATGGTAG-TTTTACTTAT  188

seq1  ATCTGCTCAGGATCTAATAAAGTGTAGTTATTCAAGGCGTGCTCATAGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCAGGATCTAATAAAGTGTAGTTATTCAAGGCGTGCTCATAGAA  238

seq1  ATGACAGAGAAAACAAATGAAACAGAGAATGACCTAAGTAATCAGTCCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAGAAAACAAATGAAACAGAGAATGACCTAAGTAATCAGTCCCT  288

seq1  CTCTCTTGGCAATGTTAAAGTTGCCTCAAACCTGAAAATATAAAGTGGAC  347
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGGCAATGTAAAAGTTGCCTCAAACCTGAAAATATAAAGTGGAC  338

seq1  GGGGGAG-AAAACTTGTGCAGCTCTAATTACATTGAGTAATAATTAGATG  396
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGAAAAACTTGTGCAGCTCTAATTACATTGAGTAATAATTAGATG  388

seq1  CTCATTCTTTTGTATTATTTAATAATTCTTCAAAAACCAAGTGAAGTAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTTTTGTATTATTTAATAATTCTTCAAAAACCAAGTGAAGTAGG  438

seq1  GAGTCAGAGTATTCTCTGATGGAATTGGAGAGATAGCTCAGTGGTTAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGAGTATTCTCTGATGGAATTGGAGAGATAGCTCAGTGGTTAAAA  488

seq1  AGCACTTACTGGGTACAGTTCACAGCACCCACGTGGTAGTTAATACTATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTACTGGGTACAGTTCACAGCACCCACGTGGTAGTTAATACTATC  538

seq1  CACAGCTCCAGTTACAGAGGATTCAATGCCCTCTTTTTGGCTTTCACACG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCCAGTTACAGAGGATTCAATGCCCTCTTTTTGGCTTTCACACG  588

seq1  CACCAAACAAACATAGGTCATACACATATATGTGCAGGCAAAGCACATAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAACAAACATAGGTCATACACATATATGTGCAGGCAAAGCACATAA  638

seq1  GTAAGATAATATAAATCTAAAACTCTAGAGTATTATGTGGCTTTGACCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAATATAAATCTAAAACTCTAGAGTATTATGTGGCTTTGACCAA  688

seq1  GTCACATAGTTATGACACAACAGAATTAGGTTTGAAAACACATGCTGTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATAGTTATGACACAACAGAATTAGGTTTGAAAACACATGCTGTCT  738

seq1  GGCTTCTATCAAGCCTGTAACCACTTTACACAATTTCCTCACATTGGTGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTATCAAGCCTGTAACCACTTTACACAATTTCCTCACATTGGTGC  788

seq1  CTTCACAGTAAAATACTTCAATTTTAAGGATGGAAGTCCACCCTTCACAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGTAAAATACTTCAATTTTAAGGATGGAAGTCCACCCTTCACAA  838

seq1  CATAGCATTTTACTTAAGTGAGGACGTGGAATGGGAGGAAGTGGCTCAGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCATTTTACTTAAGTGAGGACGTGGAATGGGAGGAAGTGGCTCAGT  888

seq1  TGAGAGTTGTTTTGTTATTTTTAGGCAATATAGAAGTTAACTCAGCATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTGTTTTGTTATTTTTAGGCAATATAGAAGTTAACTCAGCATTT  938

seq1  CCTCCCAGCTCCATGCTCCCAGAAATAAGGCTCGGACCTAAAATATATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAGCTCCATGCTCCCAGAAATAAGGCTCGGACCTAAAATATATTT  988

seq1  ACAAATACTTGGCCATACAGCTAGGCTCTTCTCTGACTAGAATCTTAGCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACTTGGCCATACAGCTAGGCTCTTCTCTGACTAGAATCTTAGCC  1038

seq1  CATTTTTTTAACCTGCATTCTGCCACATAGTTGGTTACCTTTGTTCAGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTAACCTGCATTCTGCCACATAGTTGGTTACCTTTGTTCAGGT  1088

seq1  ACCATGTATCTGCCTCTTCACATCTTCCTAGGCAGGTCTCCTGCCTGGCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTATCTGCCTCTTCACATCTTCCTAGGCAGGTCTCCTGCCTGGCA  1138

seq1  CTCTCTCGGAATTC  1160
      ||||||||||||||
seq2  CTCTCTCGGAATTC  1152


| Home | SequenceCutter | Blast | Download |