BAC Information

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BAC

Clone NameB6Ng01-198I11
Chromosome13 (Build37)
Map Location 84,399,969 - 84,401,056
singlet/doubletsinglet
Overlap geneTmem161b
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101
Downstream geneLOC666795, LOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198I11.bB6Ng01-198I11.g
ACCGA020100GA020101
length1,216820
definitionB6Ng01-198I11.b B6Ng01-198I11.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctaatgtcacacacttgcagaaactatctgcagctcataccatt
gactgcaagagcaccaggcaaatcacagtcacctgccttgaagcagtttc
tcatcccataccttggattaaaacaaaagcatagtcacataacataattg
ggatttttaagaaaccaaaattcttactatatttctcccctttagtccaa
taaatggctttttctttaacaccaagcaagtatatacaataaggcaaaat
tgtgagacttatcattcaagaattatattaacaatatttagtccattttt
atttggcaaccttggagaaagtatctatctatctatctatctatctatct
atctatctatctatctatctgatcttgatgagtccaaagttctatgccta
aagcactttatcagaacttccatttattgttattgttttaaaccataaaa
cgttttcttagatcctccccaacttaaacttttatgtctttataaagttg
cacatcttttatgagttttctttttgcatctgataacaagaaaaactgta
acattataactatctagtatttaaccatatcagagacctgagaatgataa
atagtactggagtaaacaggaaaccatgcaaaattatagaaacgacagag
attgctagctccctggacagtcacacaaggttcctctgttggaagggaat
ccaatctttggccaacaggcccaaattatctgacaggcttttctgtgaag
caggaattttgaaggactggccttctttatctcaggaaagatgggcagtt
gacttcccaatgtcccacttgacaacagtttggacagcataatgttagca
gatgagttaagggcagttttttttgcccagtggccaccaagcaaagtttt
cttttgggacccaacatcttctttgaagtacattgggagtgctgccagga
gctgataggtctctctatcagaaaagccttttattattaaaaatatctta
aatgccatattctgcagatctcttgaattgtttgagacatgtatctaata
tatctaaataagacaaatgttgcttgtttagctatttacttcacctactt
tgtaaacatgtaagagagcctaaataaggcttttttctgtagtaaactta
actaggatctaactgactcagtaagaattatttctctaaggggaccataa
ctacctaacctgtgct
gaattcacccctaacaaactgacactgccttgcaaaggcaaaaattgttt
tctccacttgagtcttactgggtattttattagctacacttagaatagac
cccatgtccagcaatagatggcctgcacaaaacaaatttcctggcatttt
tttaaactttctaactcaaaatgtttggggtatttttgtcttactgatct
tttgcttctttattattgttcccaattctgtgtttttaatgggttttagt
gggattttattggaggtggcagacacagtagtagtggtgtgtgtgctttg
tgacttttaaaaattctggtttgggtttatttgttttgttttattttcta
aacaaagggggaagggcatagcgctgagggggcggagaagtgggaggagc
taggggataggaaatcttgatcagaatataatgtataggctttttttaat
aaaaagtattgactgattaatgtggtagttccccatttttcatgaaatcc
agtggtttctcatatctgattaagcatcaaaatcattggtattttttaag
tcaaataccagaacctgttctagaatcaatggatttttaaagatgagaac
aagaaatctgtatttttaaaggtctcttcaataacataatataatgtata
aggcttgaaaactagtgttaggaacaccacttcagacagcttccccctcc
agcatttaattagctttatataaaaatttcatttttaaacttaaaatcat
tatagtcatattattacagaaactgaggggtaaagttcattatttatttt
gatatatccaattgaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84399969_84401056
seq2: B6Ng01-198I11.g_64_883 (reverse)

seq1  TTTATTCAAATGAAGTCCTCTTTTCTGTCCCTATGCTATTCTTCTCCCCG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGGAAGTGGCACACCTGCTCAGCCTTGCTGTAGCTTCTGCTTATTGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGAAACCAGTCTTGAGATCATAAATTTCAAATTTATCTCCTTTAATAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TCTATTACTGTCATGATGAACTTTAAATTATATTTGCAAATTGAGATATC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATTTTAGTAACTCAACTATTCTTATGGTGTTAGGGATTAAGAAGTTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  AGATTTTATTCACAGTTCACCTTTA-TCAATTGGATATATCAAAATAAAT  299
                           |||| ||||||||||||||||||||||||
seq2  ---------------------TTTATTCAATTGGATATATCAAAATAAAT  29

seq1  AATGAACTTTACCCCTCAGTTTCTGTAATAATATGACTATAATGATTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTTTACCCCTCAGTTTCTGTAATAATATGACTATAATGATTTTA  79

seq1  AGTTT-AAAATGAAATTTTTATATAAAGCTAATTAAATGCTGGAGGGGGA  398
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAAATGAAATTTTTATATAAAGCTAATTAAATGCTGGAGGGGGA  129

seq1  AGCTGTCTGAAGTGGTGTTCCTAACACTAGTTTTCAAGCCTTATACATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTGAAGTGGTGTTCCTAACACTAGTTTTCAAGCCTTATACATTA  179

seq1  TATTATGTTATTGAAGAGACCTTTAAAAATACAGATTTCTTGTTCTCATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGTTATTGAAGAGACCTTTAAAAATACAGATTTCTTGTTCTCATC  229

seq1  TTTAAAAATCCATTGATTCTAGAACAGGTTCTGGTATTTGACTTAAAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATCCATTGATTCTAGAACAGGTTCTGGTATTTGACTTAAAAAA  279

seq1  TACCAATGATTTTGATGCTTAATCAGATATGAG-AACCACTGGATTTCAT  597
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACCAATGATTTTGATGCTTAATCAGATATGAGAAACCACTGGATTTCAT  329

seq1  GAAAAATGGGGAACTACCACATTAATCAGTCAATACTTTTTATTAAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGGGAACTACCACATTAATCAGTCAATACTTTTTATTAAAAAA  379

seq1  AGCCTATACATTATATTCTGATCAAGATTTCCTATCCCCTAGCTCCTCCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATACATTATATTCTGATCAAGATTTCCTATCCCCTAGCTCCTCCC  429

seq1  ACTTCTCCGCCCCCTCAGCGCTATGCCCTTCCCCCTTTGTTTAGAAAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCCGCCCCCTCAGCGCTATGCCCTTCCCCCTTTGTTTAGAAAATA  479

seq1  AAACAAAACAAATAAACCCAAACCAGAATTTTTAAAAGTCACAAAGCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAATAAACCCAAACCAGAATTTTTAAAAGTCACAAAGCACA  529

seq1  CACACCACTACTACTGTGTCTGCCACCTCCAATAAAATCCCACTAAAACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACTACTACTGTGTCTGCCACCTCCAATAAAATCCCACTAAAACC  579

seq1  CATTAAAAACACAGAATTGGGAACAATAATAAAGAAGCAAAAGATCAGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAACACAGAATTGGGAACAATAATAAAGAAGCAAAAGATCAGTA  629

seq1  AGACAAAAATACCCCAAACATTTTGAGTTAGAAAGTTTAAAAAAATGCCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAATACCCCAAACATTTTGAGTTAGAAAGTTTAAAAAAATGCCA  679

seq1  GGAAATTTGTTTTGTGCAGGCCATCTATTGCTGGACATGGGGTCTATTCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGTTTTGTGCAGGCCATCTATTGCTGGACATGGGGTCTATTCT  729

seq1  AAGTGTAGCTAATAAAATACCCAGTAAGACTCAAGTGGAGAAAACAATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGCTAATAAAATACCCAGTAAGACTCAAGTGGAGAAAACAATTT  779

seq1  TTGCCTTTGCAAGGCAGTGTCAGTTTGTTAGGGGTGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGCAAGGCAGTGTCAGTTTGTTAGGGGTGAATTC  820