BAC Information

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BAC

Clone NameB6Ng01-198J22
Chromosome13 (Build37)10 (Build37)
Map Location 82,388,416 - 82,388,70964,308,019 - 64,309,175
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198J22.bB6Ng01-198J22.g
ACCGA020169GA020170
length4861,175
definitionB6Ng01-198J22.b B6Ng01-198J22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,388,416 - 82,388,709)(64,308,019 - 64,309,175)
sequence
gaattccaggttttttaatgcaaagtgactgtattagtctagagtcacag
aacttatgggtagtctccatatagtaaaggaatttgttgatgacttacag
tctgtagtccaacccccaacaatggtcagtagcagctgtgaatggaagtc
ctaggatctagtggttgctcagtcccacaaggcaaatgggagaaggagag
aaacagtatcaattttccttcttctaatgtccttatgtaggtctccagca
gaaggtgtagcccagattaaaggtgtatgccacctttaatgaccttgaac
tcaaaggtctccctgtcttaatcttctggaatccatagccactgtgcctc
aagatctccatgccaggatccagatcagaaaattttatctcccagcctcc
agatcaggatcactggtgagcctccaattctggattgtagttcattccag
atatagtcaagctgacaaccaggaatagccactaca

gaattcacaaaattgtccaaagctatatattttgagtaagtttgtggggt
aagttgaggcatttaacctagaaaatagtggatattatatgtgcctgtga
gctatcaattgcaggaagcaggcaggcctgtatccatgtgaaagcaaagt
ctaggagaaaaggactgcattagagctgtgatatgtgattacaaatcctg
gtactatataaaaatgtttaggcaaattgggaagagctggagaacctcag
gatgtagaacagagagacaatggaccttggtgtttataaacacagagatg
ggcccagtgaaaacccaagtctgtaaagagctagctgtgtaagcctgacc
ctgttcctcatatcatttataagaaaaccagtcagtcagtatggtgcaca
cctgtgatcccaccaatattgtggaggtgggagcaggaggtagccagcta
gccaaacaatctcaacaagcttaaggccaatagagagcatgtctttaaaa
ttaaagcagaatgtcacccgaggagattgccactgagggcacacattcat
catgactacacacaactgcatgcatattcaaggatccacatacatataaa
catacaagcaaatgcacatacatgtacataagcaagaaattcaaggaaaa
aaaaatacaagatctgtaaaaacagatggattgccagaagcgaaactgtg
ataaaagaagttcatgatcaggaaggtcccagtgttctgtggaagggctg
ctgtatcatataattttagccaggtctctttgcactgtttttcataataa
accaagccaaattatatcatgaagaaggtaatgaggtcacatctcttcat
atgctagatggtaattcagtatatatttattattggaagcatattcaaat
aataaatggggcttattaaaaaccatcccattctttattttcaataaacc
acccatctggtggttgtgtttttttttttttttttcatactcccatactg
gaggacatttcggcctaactgccttgtagaacaagcaataatggaggtag
tttattcttgtattccaccaacattgaaccttgccagtgaacatgggtag
ttttttttttttttattcacaggaatcatttaacgattgaatgttccaat
tcaattgaatgcctgttgaacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82388416_82388709
seq2: B6Ng01-198J22.b_260_529 (reverse)

seq1  TGTAGTGGCTATTCCTGGTTGTCAACTTGACTATATTTGGAATGAACTAC  50
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  TGTAGTGGCTATTCCTGGTTGTCAGCTTGACTATATCTGGAATGAACTAC  50

seq1  AATCCAGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGA  100
      ||||||||||||| |||||||||||||| ||| ||||||||||| |||||
seq2  AATCCAGAATTGG-AGGCTCACCAGTGATCCTGATCTGGAGGCTGGGAGA  99

seq1  -------TCCTTATCTGGTTCTTGGTTTGGAGATCTTGAGCCATAGTGGC  143
             | || |||||| || |||  ||||||||||||| || ||||||
seq2  TAAAATTTTCTGATCTGGATCCTGGCATGGAGATCTTGAGGCACAGTGGC  149

seq1  TATGGATTCCAGAAGATTGAATCTCCGAGTTTAAGGAACACACCTTTAAT  193
      ||||||||||||||||||                  || |||        
seq2  TATGGATTCCAGAAGATT------------------AAGACA--------  173

seq1  CTGGGCTACACCTTTCA--TCTGGG--ATTAAAGGTGTGGTGGAACACAC  239
        |||  | |||||| |  ||  ||  ||||||     ||||| | ||||
seq2  --GGG--AGACCTTTGAGTTCAAGGTCATTAAA-----GGTGGCATACAC  214

seq1  CTTTAATCTGGGCTACACCTTCTGCTGGAGA-CAATATAAGGACATTGGA  288
      ||||||||||||||||||||||||||||||| | | ||||||||||| ||
seq2  CTTTAATCTGGGCTACACCTTCTGCTGGAGACCTACATAAGGACATTAGA  264

seq1  AGAAGG  294
      ||||||
seq2  AGAAGG  270


seq1: chr10_64308019_64309175
seq2: B6Ng01-198J22.g_69_1243 (reverse)

seq1  AAATG-TCAACA-GCA-TCAAATGAATTGGAACATATCAAATCGTAAAAT  47
      ||||| |||||| ||| |||| ||||||||||||| || |||||| ||||
seq2  AAATGTTCAACAGGCATTCAATTGAATTGGAACAT-TC-AATCGTTAAAT  48

seq1  GATTCTTGGTGGAT-TAAAAAAAAAAAACTACCCATGTTCACT-GCAA-G  94
      ||||| | ||| ||  ||||||||||||||||||||||||||| |||| |
seq2  GATTCCT-GTGAATAAAAAAAAAAAAAACTACCCATGTTCACTGGCAAGG  97

seq1  TTC-ATGTTGGTG--ATAC-AGA--TAACTACCT-CATTATTGCTTG-TC  136
      ||| |||||||||  |||| |||   |||||||| |||||||||||| ||
seq2  TTCAATGTTGGTGGAATACAAGAATAAACTACCTCCATTATTGCTTGTTC  147

seq1  TAC-AGGCAGTTA-GCCG-AATGTCCTCCAGTATGGGAGTATG---AAAA  180
      ||| ||||||||| |||| ||||||||||||||||||||||||   ||||
seq2  TACAAGGCAGTTAGGCCGAAATGTCCTCCAGTATGGGAGTATGAAAAAAA  197

seq1  AAAAAAAAAACACAACCA-CAGATGGGTGGTTTATTGAAAATAAAGAATG  229
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACACAACCACCAGATGGGTGGTTTATTGAAAATAAAGAATG  247

seq1  GGATGGTTTTTAATAAGCCCCATTTATTATTTGAATATGCTTCCAATAAT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTTTTTAATAAGCCCCATTTATTATTTGAATATGCTTCCAATAAT  297

seq1  AAATATATACTGAATTACCATCTAGCATATGAAGAGATGTGACCTCATTA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATACTGAATTACCATCTAGCATATGAAGAGATGTGACCTCATTA  347

seq1  CCTTCTTCATGATATAATTTGGCTTGGTTTATTATGAAAAACAGTGCAAA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCATGATATAATTTGGCTTGGTTTATTATGAAAAACAGTGCAAA  397

seq1  GAGACCTGGCTAAAATTATATGATACAGCAGCCCTTCCACAGAACACTGG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTGGCTAAAATTATATGATACAGCAGCCCTTCCACAGAACACTGG  447

seq1  GACCTTCCTGATCATGAACTTCTTTTATCACAGTTTCGCTTCTGGCAATC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCTGATCATGAACTTCTTTTATCACAGTTTCGCTTCTGGCAATC  497

seq1  CATCTGTTTTTACAGATCTTGTATTTTTTTTTCCTTGAATTTCTTGCTTA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTTTTTACAGATCTTGTATTTTTTTTTCCTTGAATTTCTTGCTTA  547

seq1  TGTACATGTATGTGCATTTGCTTGTATGTTTATATGTATGTGGATCCTTG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGTATGTGCATTTGCTTGTATGTTTATATGTATGTGGATCCTTG  597

seq1  AATATGCATGCAGTTGTGTGTAGTCATGATGAATGTGTGCCCTCAGTGGC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCATGCAGTTGTGTGTAGTCATGATGAATGTGTGCCCTCAGTGGC  647

seq1  AATCTCCTCGGGTGACATTCTGCTTTAATTTTAAAGACATGCTCTCTATT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTCGGGTGACATTCTGCTTTAATTTTAAAGACATGCTCTCTATT  697

seq1  GGCCTTAAGCTTGTTGAGATTGTTTGGCTAGCTGGCTACCTCCTGCTCCC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAAGCTTGTTGAGATTGTTTGGCTAGCTGGCTACCTCCTGCTCCC  747

seq1  ACCTCCACAATATTGGTGGGATCACAGGTGTGCACCATACTGACTGACTG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCACAATATTGGTGGGATCACAGGTGTGCACCATACTGACTGACTG  797

seq1  GTTTTCTTATAAATGATATGAGGAACAGGGTCAGGCTTACACAGCTAGCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTATAAATGATATGAGGAACAGGGTCAGGCTTACACAGCTAGCT  847

seq1  CTTTACAGACTTGGGTTTTCACTGGGCCCATCTCTGTGTTTATAAACACC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGACTTGGGTTTTCACTGGGCCCATCTCTGTGTTTATAAACACC  897

seq1  AAGGTCCATTGTCTCTCTGTTCTACATCCTGAGGTTCTCCAGCTCTTCCC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCCATTGTCTCTCTGTTCTACATCCTGAGGTTCTCCAGCTCTTCCC  947

seq1  AATTTGCCTAAACATTTTTATATAGTACCAGGATTTGTAATCACATATCA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCTAAACATTTTTATATAGTACCAGGATTTGTAATCACATATCA  997

seq1  CAGCTCTAATGCAGTCCTTTTCTCCTAGACTTTGCTTTCACATGGATACA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTAATGCAGTCCTTTTCTCCTAGACTTTGCTTTCACATGGATACA  1047

seq1  GGCCTGCCTGCTTCCTGCAATTGATAGCTCACAGGCACATATAATATCCA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCCTGCTTCCTGCAATTGATAGCTCACAGGCACATATAATATCCA  1097

seq1  CTATTTTCTAGGTTAAATGCCTCAACTTACCCCACAAACTTACTCAAAAT  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTAGGTTAAATGCCTCAACTTACCCCACAAACTTACTCAAAAT  1147

seq1  ATATAGCTTTGGACAATTTTGTGAATTC  1157
      ||||||||||||||||||||||||||||
seq2  ATATAGCTTTGGACAATTTTGTGAATTC  1175


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