BAC Information

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BAC

Clone NameB6Ng01-198N10
Chromosome13 (Build37)
Map Location 81,954,436 - 82,139,874
singlet/doubletdoublet
Overlap genenone
Upstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC238756, LOC667018
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198N10.bB6Ng01-198N10.g
ACCGA020331GA020332
length1,187999
definitionB6Ng01-198N10.b B6Ng01-198N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,954,436 - 81,955,255)(82,138,877 - 82,139,874)
sequence
gaattcagcaagattgtaaaagctaagtcactcccttacacagaaatttt
ccatcacttaaaaagaaggaagtttcagaccaaaggaaaaaccagaatag
atactatagcagagttacacccatacacacgtatttacaatggcctaagg
ggaaggtggactatacaagagactaaattaggaactgtggcaaggacgcg
aagcccttggccctggcttctaagattggtgaattttaggtggagccctt
gttgatcccagctgttatcaatgtattctatcctgggtggttcccgttag
accttttgtgtttacagtcctctgttttatgtaagattccggttacctca
attgtaccttgcggatatgtcacccaacttccttattgtcctctgcataa
aaagtctgatgctcgagttgtaaaattacattcagattccacacaaactc
tcctgcgtgtgtgtctgtctgtcattcatccacgctttgcccacccgcgt
cgagagaccagttacatgcagacacagggacccagaaggtctgcggcaga
ccagcagccaccatcctctgtatttctctttctggtgccctaatagcctc
ttagacttaccaagcctcctcacccatcgcccctcccaccacaccaagtc
tcaccatcttggcaggcatttttctccccttagttacctcccttacattc
attataatccagcctaggaaatgtcattgtccttgcaaagccaaaaacac
agacctgcttaaatccaagcttccaatcgtttattccaaacctgtaactg
tgaagctgaatgtggttagtaaaagacacacaaccttactggctagtttt
ctttgggatccaagaccacacacctcttacaggacttcatgatgcatatg
aatgaatatataagtatatctatctaatctaggaggtgagagggaaaata
aacgattacctcttgtatggtcctgctcatattaatactttgaatacttg
tgttctttttaatcagctaatacctttcactcatatcatgctttcatatt
tcaattctttctagcttatagcaccttctgtctactttataaacatctaa
gggaatatcggtagaatccatgttgaatctacagcatctacccaatacca
gcctgcacaccactagtataagtaaattatttaattg

gaattcagatgaatttcttcttcaacatttctaaagaatacttttataac
aaggatgtacatgcaataagtatcagtgtagttgacacttaaaatatcaa
atatcagaacacatagcatttggtttacgtaatgtattacaagaaaaaag
gcctatgtaaagttgatttcttttatcttgccactgactttattccaaat
tcatttgtattttctgctggcaaaagtttgaccactgtacatagatgtgt
ctataattaggaatgcagcaattcacataaaaatcaagtatttaaaagaa
atataatttttctgctaaaacattaaccaggccttcaaaactacaataat
gcaaccaaccaaaacactttaaaataaaactggacaatttactgtggtat
atcaggagaaatcaaatgctctgtgtgcctcacacattaccatttctaaa
gaaaagctgtgatgctcacaaactccccagaacagagtactgcaacattt
cagatgctacttagatctactttgtgtgtatttaaacacaaatttaagaa
attggtctctaagcatttgcttttcacagactttccactgactgctgcta
gcttgctgtgttaccttggaactcattttgaatctctggtctgtttctca
tttacataactgtttcctcttaatattctgtaaagatgatataaaaaagc
aagaaagaagtttaattttgtttccactatatctatatttaggtgccaca
gtggaacaccatggatagatggattggcaagcctttgtactggcttccag
gcatctgagatggacacaaagctgaattagaaattgtgtgtctactacac
aaactcacacaaagctcagatcctttcatcacaatgtggtcccggataca
tcacttcagtttgaaattctcattgaatcatctatcatttccctttttta
aagtttttctatttgctttgtgctcaaatgatggtgggtggtgggggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81954436_81955255
seq2: B6Ng01-198N10.b_427_1234

seq1  TCCTTATTGTCCTCTGCATAAAAAGTCTGATGCTCGAGTTGTAAAATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTATTGTCCTCTGCATAAAAAGTCTGATGCTCGAGTTGTAAAATTAC  50

seq1  ATTCAGATTCCACACAAACTCTCCTGCGTGTGTGTCTGTCTGTCATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATTCCACACAAACTCTCCTGCGTGTGTGTCTGTCTGTCATTCAT  100

seq1  CCACGCTTTGCCCACCCGCGTCGAGAGACCAGTTACATGCAGACACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCTTTGCCCACCCGCGTCGAGAGACCAGTTACATGCAGACACAGGG  150

seq1  ACCCAGAAGGTCTGCGGCAGACCAGCAGCCACCATCCTCTGTATTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGGTCTGCGGCAGACCAGCAGCCACCATCCTCTGTATTTCTCT  200

seq1  TTCTGGTGCCCTAATAGCCTCTTAGACTTACCAAGCCTCCTCACCCATCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTGCCCTAATAGCCTCTTAGACTTACCAAGCCTCCTCACCCATCG  250

seq1  CCCCTCCCACCACACCAAGTCTCACCATCTTGGCAGGCATTTTTCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCACCACACCAAGTCTCACCATCTTGGCAGGCATTTTTCTCCCC  300

seq1  TTAGTTACCTCCCTTACATTCATTATAATCCAGCCTAGGAAATGTCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACCTCCCTTACATTCATTATAATCCAGCCTAGGAAATGTCATTG  350

seq1  TCCTTGCAAAGCCAAAAACACAGACCTGCTTAAATCCAAGCTTCCAATCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAAAGCCAAAAACACAGACCTGCTTAAATCCAAGCTTCCAATCG  400

seq1  TTTATTCCAAACCTGTAACTGTGAAGCTGAATGTGGTTAGTAAAAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCAAACCTGTAACTGTGAAGCTGAATGTGGTTAGTAAAAGACAC  450

seq1  ACAACCTTACTGGCTAGTTTTCTTTGGGATCCAAGACCACACACCTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCTTACTGGCTAGTTTTCTTTGGGATCCAAGACCACACACCTCTTA  500

seq1  CAGGACTTCATGATGCATATGAATGAATATATAAGTATATCTATCTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTTCATGATGCATATGAATGAATATATAAGTATATCTATCTAATC  550

seq1  TAGGAGGTGAGAGGGAAAATAAACGATTA-CTCTTGTATGTTCCTGCTCA  599
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  TAGGAGGTGAGAGGGAAAATAAACGATTACCTCTTGTATGGTCCTGCTCA  600

seq1  TA-TAATACTTTGAATACTTTGTGTTCTTTTTTATCAGCTAATAACTTTC  648
      || ||||||||||||||| ||||||||||||| ||||||||||| |||| 
seq2  TATTAATACTTTGAATAC-TTGTGTTCTTTTTAATCAGCTAATACCTTT-  648

seq1  CACTCATATCATGCTTTCAATATTTTCCATTCTTTCTAGCTAATAGC-CA  697
      |||||||||||||||||| ||| |||| ||||||||||||| ||||| | 
seq2  CACTCATATCATGCTTTC-ATA-TTTCAATTCTTTCTAGCTTATAGCACC  696

seq1  CTCTGTCTACTTTATAAACATTCTAAAAGGGATATCCGTAGAAACCCATT  747
       ||||||||||||||||||| ||| || || ||||| |||||| ||   |
seq2  TTCTGTCTACTTTATAAACA-TCT-AAGGGAATATCGGTAGAATCC--AT  742

seq1  GTTGTATCTACCAGCATCTACCCAATAACAACTCTTTCACCACCACTAGA  797
      |||| ||||| |||||||||||||||| ||   | | || ||||||||| 
seq2  GTTGAATCTA-CAGCATCTACCCAATACCA--GCCTGCA-CACCACTAG-  787

seq1  AATAAATTAAAATTATTTAATTG  820
       |||| |  ||||||||||||||
seq2  TATAAGT--AAATTATTTAATTG  808


seq1: chr13_82138877_82139874
seq2: B6Ng01-198N10.g_65_1063 (reverse)

seq1  TACCACCACCA-CCACCATCATTTGAGCACAAAGCAAATAGAAAAACTTT  49
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACCACCCACCATCATTTGAGCACAAAGCAAATAGAAAAACTTT  50

seq1  AAAAAA-GGAAATGATAGATTGATCCAATGAGAATTTCAAACTGAAGTGA  98
      |||||| |||||||||||| |||| |||||||||||||||||||||||||
seq2  AAAAAAGGGAAATGATAGA-TGATTCAATGAGAATTTCAAACTGAAGTGA  99

seq1  TGTATCCGGGACCACATTGTGATGAAAGGATCTGAGCTTTGTGTGAGTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCGGGACCACATTGTGATGAAAGGATCTGAGCTTTGTGTGAGTTT  149

seq1  GTGTAGTAGACACACAATTTCTAATTCAGCTTTGTGTCCATCTCAGATGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTAGACACACAATTTCTAATTCAGCTTTGTGTCCATCTCAGATGC  199

seq1  CTGGAAGCCAGTACAAAGGCTTGCCAATCCATCTATCCATGGTGTTCCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCCAGTACAAAGGCTTGCCAATCCATCTATCCATGGTGTTCCAC  249

seq1  TGTGGCACCTAAATATAGATATAGTGGAAACAAAATTAAACTTCTTTCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACCTAAATATAGATATAGTGGAAACAAAATTAAACTTCTTTCTT  299

seq1  GCTTTTTTATATCATCTTTACAGAATATTAAGAGGAAACAGTTATGTAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTATATCATCTTTACAGAATATTAAGAGGAAACAGTTATGTAAA  349

seq1  TGAGAAACAGACCAGAGATTCAAAATGAGTTCCAAGGTAACACAGCAAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACAGACCAGAGATTCAAAATGAGTTCCAAGGTAACACAGCAAGC  399

seq1  TAGCAGCAGTCAGTGGAAAGTCTGTGAAAAGCAAATGCTTAGAGACCAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAGTCAGTGGAAAGTCTGTGAAAAGCAAATGCTTAGAGACCAAT  449

seq1  TTCTTAAATTTGTGTTTAAATACACACAAAGTAGATCTAAGTAGCATCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAATTTGTGTTTAAATACACACAAAGTAGATCTAAGTAGCATCTG  499

seq1  AAATGTTGCAGTACTCTGTTCTGGGGAGTTTGTGAGCATCACAGCTTTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGCAGTACTCTGTTCTGGGGAGTTTGTGAGCATCACAGCTTTTC  549

seq1  TTTAGAAATGGTAATGTGTGAGGCACACAGAGCATTTGATTTCTCCTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAATGGTAATGTGTGAGGCACACAGAGCATTTGATTTCTCCTGAT  599

seq1  ATACCACAGTAAATTGTCCAGTTTTATTTTAAAGTGTTTTGGTTGGTTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCACAGTAAATTGTCCAGTTTTATTTTAAAGTGTTTTGGTTGGTTGC  649

seq1  ATTATTGTAGTTTTGAAGGCCTGGTTAATGTTTTAGCAGAAAAATTATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTAGTTTTGAAGGCCTGGTTAATGTTTTAGCAGAAAAATTATAT  699

seq1  TTCTTTTAAATACTTGATTTTTATGTGAATTGCTGCATTCCTAATTATAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAAATACTTGATTTTTATGTGAATTGCTGCATTCCTAATTATAG  749

seq1  ACACATCTATGTACAGTGGTCAAACTTTTGCCAGCAGAAAATACAAATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCTATGTACAGTGGTCAAACTTTTGCCAGCAGAAAATACAAATGA  799

seq1  ATTTGGAATAAAGTCAGTGGCAAGATAAAAGAAATCAACTTTACATAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAATAAAGTCAGTGGCAAGATAAAAGAAATCAACTTTACATAGGC  849

seq1  CTTTTTTCTTGTAATACATTACGTAAACCAAATGCTATGTGTTCTGATAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTGTAATACATTACGTAAACCAAATGCTATGTGTTCTGATAT  899

seq1  TTGATATTTTAAGTGTCAACTACACTGATACTTATTGCATGTACATCCTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTTAAGTGTCAACTACACTGATACTTATTGCATGTACATCCTT  949

seq1  GTTATAAAAGTATTCTTTAGAAATGTTGAAGAAGAAATTCATCTGAATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAAGTATTCTTTAGAAATGTTGAAGAAGAAATTCATCTGAATTC  999


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