BAC Information

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BAC

Clone NameB6Ng01-204B12
Chromosome13 (Build37)
Map Location 91,167,721 - 91,225,856
singlet/doubletdoublet
Overlap geneAtg10
Upstream geneXrcc4, Tmem167, LOC100043170, LOC624190, EG435376, Rps23
Downstream geneLOC100042959, Ssbp2, LOC666889, Acot12, Zcchc9, Ckmt2, Rasgrf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204B12.bB6Ng01-204B12.g
ACCGA024134GA024135
length1,1541,129
definitionB6Ng01-204B12.b B6Ng01-204B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,167,721 - 91,168,691)(91,224,746 - 91,225,856)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatgtattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattggcggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcaattcttgatcttacatcacaagccattgccgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttaactcccttgtcaaagatcaagt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcagttttgatcacaattgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggtttttccctatctcttaca
cagtgaggagaaaccagcaaccccacagtcattacacagctatctccttc
ccagccatcagtctcccaataaaaaccatggtctgacccagcattctaaa
tttctccacggtatgtgcttgtcctgcctttgtgctactctgggatttaa
tttcaaacttccaaaatggcctctgttagtctcctagctctagtgctggg
tgtccatgcctataaacttcaacataaatgtaatgtattctgtgcggaac
tacactctactactcctctcccttacagggcaaaatcccaaatgttacca
gttatattagtcagccccctctatgggcctatctgcaccactgtctttct
tccagacaaggtcttatgaagggagcgacccactcatcacatcacagcac
agccaggccttggccctcttggcttttcataattaacatcgcttctcttg
aagt
gaattctttctttgtgattgtctggtaggaatgatctttttgttctgact
tgtatttcttaggttatcagtgaagcaaatttagccatttgtatctcatc
tttgataccttgcctacttttgcatttcttattgattgatgagattatta
aagataaagtacttggtgggttacaaatattcttcccaatttctcttttt
cttttgtttaaaaagctatcgtacataattttcaaaaatagctttggtca
aatctaataatcagcctgtgattttcctttttgttaaaagctgaaagccc
tatattacataatttgatatttctttggatactgtgatgtaggaggggtt
aatcaagtaaagtttttacagtgtctagcttaaataagttataagaaatt
tattgtgttagactgcataattgtcatttataaagacccatttttaaata
tcttgacaaaagatcagctgttctgccccaggctctgaagtctctaggag
atcataggaagtgagtgtccatctaggagatcataggaagtgagcgtcca
tctaggagatcataggaagtgagtgtccatctaggagatcataggaagtg
agtgtccatctaggagatcataggaagtgagtgtccgtctaggagatcat
aggaagtgagtgtccatctaggagagcataggaagtgagtgtccatctag
gagatcataggaagtgagtgtccatctaggagatcataggaagtgagcgt
ccatctaagagatcataggaagtgagtgtccatctaggagagcataggaa
gtgagcgtccatctaggagagcataggaagtgagcgtccatctaggagat
cattaggaagtgagtgtccatctaggagatcatagggaagtgagcgtcca
ttcttgggagatcataggaagttgagtgttccatctaggagagcattagg
aagttgagcgtcccatctagagatcattaggaagtgaattgttcattcta
tgagatcataggaaggtgagtgttccgttctagggagatcataggaagtg
agtgttccattctaggagatctagggagtgagtgtcatcttagggagatc
taatggagttgagcgttcatcttggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_91167721_91168691
seq2: B6Ng01-204B12.b_230_1196

seq1  CTTTGCAATTTTATGAGGTCCCATTTATCAATTCTTGATCTTACATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCAATTTTATGAGGTCCCATTTATCAATTCTTGATCTTACATCACA  50

seq1  AGCCATTGCCGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGCCGTTCTATTCAGGAATTTTTCCCCTGTACCCATATCTTCAA  100

seq1  GGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATG  150

seq1  TGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAA  200

seq1  TGGATCAATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAATTCGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACC  250

seq1  ATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAACTCCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAACTCCCTTG  300

seq1  TCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATCAAGTGACCATAGGTGTGTGGATTCATCTCTGGGTCTTCAAT  350

seq1  TCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTT  400

seq1  TGATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGCATGGTGATTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAATTGCTCTGTAGTACAGTTTTAGGTCCGGCATGGTGATTCCA  450

seq1  CCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTGCTATCCTCGGTTTTTC  500

seq1  CCTATCTCTTACACAGTGAGGAGAAACCAGCAACCCCACAGTCATTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTCTTACACAGTGAGGAGAAACCAGCAACCCCACAGTCATTACAC  550

seq1  AGCTATCTCCTTCCCAGCCATCAGTCTCCCAATAAAAACCATGGTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTCCTTCCCAGCCATCAGTCTCCCAATAAAAACCATGGTCTGAC  600

seq1  CCAGCATTCTAAATTTCTCCACGGTATGTGCTTGTCCTGCCTTTGTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTCTAAATTTCTCCACGGTATGTGCTTGTCCTGCCTTTGTGCTA  650

seq1  CTCTGGGATTTAATTTCAAACTTCCAAAATGGCCTCTGTTAGTCTCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGATTTAATTTCAAACTTCCAAAATGGCCTCTGTTAGTCTCCTAG  700

seq1  CTCTAGTGCTGGGTGTCCATGCCTATAAACTTCAAACATAAATGTAATGT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTAGTGCTGGGTGTCCATGCCTATAAACTTC-AACATAAATGTAATGT  749

seq1  ATTCTGTGCGGAACTACACTCTACTACTCCTCT-CCTTACAGGGCAAAAT  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTCTGTGCGGAACTACACTCTACTACTCCTCTCCCTTACAGGGCAAAAT  799

seq1  -CCAAATG-TACCAG-TATATTAGTCAGCCCCTCCAATGGGCCTATCTGC  846
       ||||||| |||||| ||||||||||||||||  | ||||||||||||||
seq2  CCCAAATGTTACCAGTTATATTAGTCAGCCCCCTCTATGGGCCTATCTGC  849

seq1  ACCACTGTCTTTCTTCCCAAGGAACCAGGTCTTATGAAGGGAGCGAACCC  896
      |||||||||||||||||  ||  || ||||||||||||||||||| ||||
seq2  ACCACTGTCTTTCTTCC--AG--ACAAGGTCTTATGAAGGGAGCG-ACCC  894

seq1  ACTCATCACATCACAGCAACCAGCCAGCCCTTTGCCCTCCTGGGCTTTTT  946
      ||||||||||||||||||  ||||||| |||| |||||| |||   ||||
seq2  ACTCATCACATCACAGCA--CAGCCAGGCCTTGGCCCTCTTGG--CTTTT  940

seq1  CATAATAAACATCGC-TCTC-TGAAGT  971
      |||||| |||||||| |||| ||||||
seq2  CATAATTAACATCGCTTCTCTTGAAGT  967

seq1: chr13_91224746_91225856
seq2: B6Ng01-204B12.g_64_1192 (reverse)

seq1  ATCTCCAAGATGGACGCTC-ACTTCCTATGATCTCC--TAGATGGACACT  47
      |||||||||||| |||||| ||| | |  |||||||   |||| ||||||
seq2  ATCTCCAAGATGAACGCTCAACTCCATTAGATCTCCCTAAGAT-GACACT  49

seq1  CACTTCCTATGATCTCCTAG-ATGG-ACACTCACTTCCTATGATCT-CCT  94
      |||| |||| |||||||||| |||| |||||||||||||||||||| |||
seq2  CACTCCCTA-GATCTCCTAGAATGGAACACTCACTTCCTATGATCTCCCT  98

seq1  AG-ACGG-ACACTCA-CTTCCTATGATCTCCTAG-ATGGAC-ACTCACTT  139
      || |||| ||||||| |||||||||||||| ||| ||| || | ||||||
seq2  AGAACGGAACACTCACCTTCCTATGATCTCATAGAATGAACAATTCACTT  148

seq1  CCT-ATGATCTCCTAGAT-GGACGCTC-ACTTCCT-ATGCTCTCCTAGAT  185
      ||| ||||||| |||||| |||||||| ||||||| ||||||||||||||
seq2  CCTAATGATCT-CTAGATGGGACGCTCAACTTCCTAATGCTCTCCTAGAT  197

seq1  GG-ACACTC-ACTTCCTATGATCT-CCAAG-ATGGACGCTCACTT-CCTA  230
      || |||||| |||||||||||||| ||||| |||||||||||||| ||||
seq2  GGAACACTCAACTTCCTATGATCTCCCAAGAATGGACGCTCACTTCCCTA  247

seq1  TGATCTCCTAGATGGACACTCACTTCCT-ATGATCTCCTAGATGGACGCT  279
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGATCTCCTAGATGGACACTCACTTCCTAATGATCTCCTAGATGGACGCT  297

seq1  CACTTCCTATGCTCTCCTAGATGGACGCTCACTTCCTATGCTCTCCTAGA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTATGCTCTCCTAGATGGACGCTCACTTCCTATGCTCTCCTAGA  347

seq1  TGGACACTCACTTCCTATGATCTCTTAGATGGACGCTCACTTCCTATGAT  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACTCACTTCCTATGATCTCTTAGATGGACGCTCACTTCCTATGAT  397

seq1  CTCCTAGATGGACACTCACTTCCTATGATCTCCTAGATGGACACTCACTT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGATGGACACTCACTTCCTATGATCTCCTAGATGGACACTCACTT  447

seq1  CCTATGCTCTCCTAGATGGACACTCACTTCCTATGATCTCCTAGACGGAC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCTCTCCTAGATGGACACTCACTTCCTATGATCTCCTAGACGGAC  497

seq1  ACTCACTTCCTATGATCTCCTAGATGGACACTCACTTCCTATGATCTCCT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTCCTATGATCTCCTAGATGGACACTCACTTCCTATGATCTCCT  547

seq1  AGATGGACACTCACTTCCTATGATCTCCTAGATGGACGCTCACTTCCTAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACACTCACTTCCTATGATCTCCTAGATGGACGCTCACTTCCTAT  597

seq1  GATCTCCTAGATGGACACTCACTTCCTATGATCTCCTAGAGACTTCAGAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTAGATGGACACTCACTTCCTATGATCTCCTAGAGACTTCAGAG  647

seq1  CCTGGGGCAGAACAGCTGATCTTTTGTCAAGATATTTAAAAATGGGTCTT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGCAGAACAGCTGATCTTTTGTCAAGATATTTAAAAATGGGTCTT  697

seq1  TATAAATGACAATTATGCAGTCTAACACAATAAATTTCTTATAACTTATT  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGACAATTATGCAGTCTAACACAATAAATTTCTTATAACTTATT  747

seq1  TAAGCTAGACACTGTAAAAACTTTACTTGATTAACCCCTCCTACATCACA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGACACTGTAAAAACTTTACTTGATTAACCCCTCCTACATCACA  797

seq1  GTATCCAAAGAAATATCAAATTATGTAATATAGGGCTTTCAGCTTTTAAC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAAAGAAATATCAAATTATGTAATATAGGGCTTTCAGCTTTTAAC  847

seq1  AAAAAGGAAAATCACAGGCTGATTATTAGATTTGACCAAAGCTATTTTTG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAAATCACAGGCTGATTATTAGATTTGACCAAAGCTATTTTTG  897

seq1  AAAATTATGTACGATAGCTTTTTAAACAAAAGAAAAAGAGAAATTGGGAA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATGTACGATAGCTTTTTAAACAAAAGAAAAAGAGAAATTGGGAA  947

seq1  GAATATTTGTAACCCACCAAGTACTTTATCTTTAATAATCTCATCAATCA  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGTAACCCACCAAGTACTTTATCTTTAATAATCTCATCAATCA  997

seq1  ATAAGAAATGCAAAAGTAGGCAAGGTATCAAAGATGAGATACAAATGGCT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAATGCAAAAGTAGGCAAGGTATCAAAGATGAGATACAAATGGCT  1047

seq1  AAATTTGCTTCACTGATAACCTAAGAAATACAAGTCAGAACAAAAAGATC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCTTCACTGATAACCTAAGAAATACAAGTCAGAACAAAAAGATC  1097

seq1  ATTCCTACCAGACAATCACAAAGAAAGAATTC  1111
      ||||||||||||||||||||||||||||||||
seq2  ATTCCTACCAGACAATCACAAAGAAAGAATTC  1129