BAC Information

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BAC

Clone NameB6Ng01-204C04
Chromosome13 (Build37)
Map Location 61,841,457 - 61,842,050
singlet/doubletsinglet
Overlap geneLOC673332
Upstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415
Downstream geneBC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204C04.bB6Ng01-204C04.g
ACCGA024166GA024167
length1,1891,098
definitionB6Ng01-204C04.b B6Ng01-204C04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctttcctgttttaaaattcaagaaaacagttttttcttttgat
gcacttctgtagtttcaataaaaatgaaggaaggatttagtgaataaatt
atgcatgactataaggttcactgaagatagtaacttacattttgctaaat
tttaaggcatacattttctgttttaggctttaattgggaagcccaaaata
ttgaagaatattgtcaaagttctagaagacacagaaggtaattttcatgt
gcaagctcatacatatctgcctctaaagataccttaaagtgtgctgaaaa
ttgataagaaaaggagcagtgtagattagcacagctttaagtgtattgat
gattgttacattccaacaaaaccatcctctttaatgtcctgtatctgatt
aatttgcaaggccttcctttaagaaagaggacaagcgctggctgtggtgg
tgcacacctgtaatcccagcactcgggaggctaagtttagttagaagggc
agcatttgggagatgagtaggaggttttgcagtaaccttaatccatattt
catgtgtctatgtgaacactgagtcaaaccttgtgaatgcaaacttcaac
attttattcatttgacttactttcataagtatataatattttataatgga
tacacaccatgtgtacaaaacaaatatcccaaagaactgtgtctgtctgt
ctttctctctctctttccttctgtctcctgtaactattagaagatatata
gtgggttgcagttatagagtagacttttttgaacataatacaagtttaac
agttcattacattttcaagtttgatggcaatacatcagcaacctcattct
ggtgaaaatttctctttgagtcctagggatgtagaaaatgctcctatttc
tgctgggttcacttttgcaaatatactatgaccccacagtacagtaaaat
tttggaatacacttagtgtgttaaagctctgaattccctccactttttct
tcaagtacgggaacactattttataaaaaaaagatacctaaaacctgagc
catgttatcaatgttcattactttctcagtgtctcttaactatggagaaa
gatccttaattgtagggatcaggcatggatgtacgcaacggtataacggt
cctgatgtccctctttacatctttatgaccaaatcacat
gaattctttgtttagctctggactctatttttaataggggtatttggttc
tctggcgtctaacttcttaagttctttatatatattgaatataagccctc
tagcagatgtagggttggtaaaaatcttttcccaatctgttgtttgccat
tttgtcctattggctatgtcctttgccttacagaagctttgcaattttct
gaggtcgcatttgtcaattcttggtcttagagcatgtacaggctaatttt
ttgtcaacttgacacagctggagttatcacagaaaaaggagcttcagttg
aagaaatgcctccatgagatccaactgtaaggcattttctcaattagtga
tcaaggtggaagggccccttatgggtgggaccatccctgggttggtagtc
ttggattctataagagagcaggctgagcaatccaggggaaacaagacagt
aaggaacaaccctccatggcctctgcatcagctcctgcttcctgacctgc
ttgagttccagtcctgacttccttagtgatgaacagcagtttggaagtgc
aagccaaataaaccctttcctccccaactgcttcttggtcatgatgtttg
tgcaggaatagaaaccctgactaaggcaaagcataaaccattggtgttct
gttcaggaaatttttccctgtgcccatgtgtttgaggctctccccccact
ttctcttctattagtttcagtgtatccggttttatgtggcagtccttgat
ccaagtggacttgagctttgtacaaggagataagaatggatcaactttgc
ttccactctggactggtgccatgagtggacattagtgcaaattccacagc
ctgtcccacaacacccagaggaagcaccacgcccagtgctctaatgctcc
caggatcataggattagagtgaggagcacaaaacatgtgccccaacacct
gcagttactgggaccatcggtatcaggcacccaggaacttcggccatatt
tttcttatgtcagtggaactgctaaacatatatttccttttggtaaatat
cttatttaatgttataggtgttgacctgggtgtacctcaagtttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_61841457_61842050
seq2: B6Ng01-204C04.g_570_1165

seq1  GAGTTCCAGTCCTGACTTCCTTAGTGATGAACAGCAGTTTGGAAGTGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAGTTCCAGTCCTGACTTCCTTAGTGATGAACAGCAGTTTGGAAGTGCAA  50

seq1  GCCAAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATAAACCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTG  100

seq1  CAGGAATAGAAACCCTGACTAAGACAGAGCATAAACCATTGGTGTTCTGT  150
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  CAGGAATAGAAACCCTGACTAAGGCAAAGCATAAACCATTGGTGTTCTGT  150

seq1  TCAGGAAATTTTTCCCTGTGCCCATGTGTTTGAGGCTCTCCCCCCACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATTTTTCCCTGTGCCCATGTGTTTGAGGCTCTCCCCCCACTTT  200

seq1  CTCTTCTACTAGTTTCAGTGTATCCGGTTTTATGTGGCAGTCCTTGATCC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATTAGTTTCAGTGTATCCGGTTTTATGTGGCAGTCCTTGATCC  250

seq1  AAGTGGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAAC-TTGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGTGGACTTGAGCTTTGTACAAGGAGATAAGAATGGATCAACTTTGCTT  300

seq1  CCACTATGGACTGGTGCCATGAGTGGACATTGGGTGTAAATTCTGTAACC  349
      ||||| |||||||||||||||||||||||||  ||| ||||||   | ||
seq2  CCACTCTGGACTGGTGCCATGAGTGGACATT-AGTGCAAATTCCACAGCC  349

seq1  TGTCCCACAACACCCAGAGGAAGCACCACTCCCAAGTGCTCTAACACTTC  399
      ||||||||||||||||||||||||||||| ||| ||||||||||  || |
seq2  TGTCCCACAACACCCAGAGGAAGCACCACGCCC-AGTGCTCTAATGCTCC  398

seq1  CTGGATCATAGGATTAGAGGTGAGGATCACAAAACATGTTCCCCAATACC  449
      | |||||||||||||||| ||||||| |||||||||||| |||||| |||
seq2  CAGGATCATAGGATTAGA-GTGAGGAGCACAAAACATGTGCCCCAACACC  447

seq1  TGCAG-TACTGGGACCATAGGTAACCAGGCACCCAGGAAC-TCGGCCAAT  497
      ||||| |||||||||||| ||| | ||||||||||||||| |||||||  
seq2  TGCAGTTACTGGGACCATCGGT-ATCAGGCACCCAGGAACTTCGGCCATA  496

seq1  ATTTTCTTATGTCCAAGTGGAACTGCTAAACCATATATTCCCTTTTGGT-  546
       ||||||||||||  ||||||||||||||| |||||||| ||||||||| 
seq2  TTTTTCTTATGTC--AGTGGAACTGCTAAA-CATATATTTCCTTTTGGTA  543

seq1  AATATCTTA-TTAAAGTTATA--TTGTGAACT-GGTGTACCTC-AGGTTC  591
      ||||||||| |||| ||||||  |  ||| || |||||||||| || |||
seq2  AATATCTTATTTAATGTTATAGGTGTTGACCTGGGTGTACCTCAAGTTTC  593

seq1  TGG  594
      |||
seq2  TGG  596