BAC Information

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BAC

Clone NameB6Ng01-204D07
Chromosome13 (Build37)
Map Location 59,721,055 - 59,889,076
singlet/doubletdoublet
Overlap geneMak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6
Upstream geneLOC100041510, LOC435361, Ntrk2, LOC100041533, Agtpbp1
Downstream geneLOC100041267, Gas1, EG328264, Dapk1, LOC218274, BC051665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204D07.bB6Ng01-204D07.g
ACCGA024216GA024217
length912731
definitionB6Ng01-204D07.b B6Ng01-204D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,721,055 - 59,721,856)(59,888,348 - 59,889,076)
sequence
gaattcagttggtgtgcatctattcagttggtgtgcatctattcagtcgg
tgtgcatctattcagtcggtgtgcatctattcagtcggtgtgcatctatt
cagtcggtgtgcatctattcagtcggtgtgcatctattcagtcggtgtgc
atctattcagtcggtgtgcatctattcagtcggtgtgcatctattcagtt
ggtgtttttattaaatcctatgatgtaccagtcatgcctgctctatccgt
gtccaccctgctgagcaggattaaactagggcagcgacctaatgctcagt
tcaccaccatttcattctcaggcttaccagccctgctttcttgctttaca
tttgtcttgttttttcattgttcacacctctgtatgtaacatgttaaacc
tgaacaatcgtcaaaacaagctttattttagaaaggtgcacccagtacca
gccatccggctgtcttaccctatgtcaggatttaaagagcagctccaaac
gttgaggaagagatggtttggtttgatttggtttggttttgttgctttgc
tgtgctttactttgctttttcaaggtaggctttctctgtatagatctagc
tgtcctggaactcactttgtagaccagactacctctgctagtgagtgatg
ggattaaaggtgtgtgacatggtttcactgtcaggggtagagggtttcca
aatgcaaggtttggtggagttacaggaggggaacataagcgtaagagttt
agccataatgacctcctgaaaacaaggtcctgattgccatttctgagctg
gaaaagtgcttgtagttaaggaggtgggtgggagccgctcctctgaaaac
agagatgtaatcagcaacaggagtgagcatggttgcttcttcactgtagg
tgacttttaagc
gaattcaacagtccactgtaaaccattgacgtgtatagttagttgttcct
aagtggtagggattcagtttttaagaagacaaaataagccgggcagtggt
ggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttc
tgagttcgaggccagcctggtctacagagtgagttccaggacagccaggg
ctacacagagaaaccctatttcgaaaaaccaaaaaattaaaaaataaata
aataaataaaaaagaagacagaatgaaggtcaagtgctataaagtgagct
gggaagggactgagaaaatgtcttcttggtctcacaggacccttttctta
tcacactgtcacatagatggagtgtgaattttgtgattatttcattactg
cgagcagtactgacgcagtgccataagcactacctgggctatgcatggta
gggacttgtgttctagaggctcctatcaaagcacagattagtgaaggcag
attgccatgtcatttgttgttgctcagcttactaagtgaactttaaaaag
aaaaaggcagaactgagagtgtgatggccacatctaatcccagtactggg
gagctaacctaaaagccaaagcagtctttgctcagcttctcaaccaggcc
tgattaatagcaatgctttccaactgtatggtaactaatgtacaatctgc
cttttataaccagcaaacacccaaactgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_59721055_59721856
seq2: B6Ng01-204D07.b_44_847

seq1  GAATTCAGTTGGTGTGCATCTATTCAGTTGGTGTGCATCTATTCAGTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGGTGTGCATCTATTCAGTTGGTGTGCATCTATTCAGTCGG  50

seq1  TGTGCATCTATTCAGTCGGTGTGCATCTATTCAGTCGGTGTGCATCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCTATTCAGTCGGTGTGCATCTATTCAGTCGGTGTGCATCTATT  100

seq1  CAGTCGGTGTGCATCTATTCAGTCGGTGTGCATCTATTCAGTCGGTGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGGTGTGCATCTATTCAGTCGGTGTGCATCTATTCAGTCGGTGTGC  150

seq1  ATCTATTCAGTCGGTGTGCATCTATTCAGTCGGTGTGCATCTATTCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTCAGTCGGTGTGCATCTATTCAGTCGGTGTGCATCTATTCAGTT  200

seq1  GGTGTTTTTATTAAATCCTATGATGTACCAGTCATGCCTGCTCTATCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTATTAAATCCTATGATGTACCAGTCATGCCTGCTCTATCCGT  250

seq1  GTCCACCCTGCTGAGCAGGATTAAACTAGGGCAGCGACCTAATGCTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACCCTGCTGAGCAGGATTAAACTAGGGCAGCGACCTAATGCTCAGT  300

seq1  TCACCACCATTTCATTCTCAGGCTTACCAGCCCTGCTTTCTTGCTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACCATTTCATTCTCAGGCTTACCAGCCCTGCTTTCTTGCTTTACA  350

seq1  TTTGTCTTGTTTTTTCATTGTTCACACCTCTGTATGTAACATGTTAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGTTTTTTCATTGTTCACACCTCTGTATGTAACATGTTAAACC  400

seq1  TGAACAATCGTCAAAACAAGCTTTATTTTAGAAAGGTGCACCCAGTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAATCGTCAAAACAAGCTTTATTTTAGAAAGGTGCACCCAGTACCA  450

seq1  GCCATCCGGCTGTCTTACCCTATGTCAGGATTTAAAGAGCAGCTCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCGGCTGTCTTACCCTATGTCAGGATTTAAAGAGCAGCTCCAAAC  500

seq1  GTTGAGGAAGAGATGGTTTGGTTTGATTTGGTTTGGTTTTGTTGCTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAAGAGATGGTTTGGTTTGATTTGGTTTGGTTTTGTTGCTTTGC  550

seq1  TGTGCTTTACTTTGCTTTTTCAAGGTAGGCTTTCTCTGTATAGATCTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTACTTTGCTTTTTCAAGGTAGGCTTTCTCTGTATAGATCTAGC  600

seq1  TGTCCTGGAACTCACTTTGTAGACCAGACTACCTCTGCTAGTGAGTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCACTTTGTAGACCAGACTACCTCTGCTAGTGAGTGATG  650

seq1  GGATTAAAGGTGTGTGACATGGTTTCACTGTCAGGGGTAGAGGGTTTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGTGTGTGACATGGTTTCACTGTCAGGGGTAGAGGGTTTCCA  700

seq1  AATGCAAGGTTTGGTGGAGTTACAGGAGGGGAACATAAGCGTAAGAG-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATGCAAGGTTTGGTGGAGTTACAGGAGGGGAACATAAGCGTAAGAGTTT  750

seq1  AGCCATAATGACCTCCTG-AAACAAGGTCCTGATTGCCATTTCTGAGCTG  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCCATAATGACCTCCTGAAAACAAGGTCCTGATTGCCATTTCTGAGCTG  800

seq1  GAAA  802
      ||||
seq2  GAAA  804

seq1: chr13_59888348_59889076
seq2: B6Ng01-204D07.g_71_801 (reverse)

seq1  TTACAGTTTGGGTGTTTGCTGGTTATAAAAGGCAGATTGTACATTAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTGGGTGTTTGCTGGTTATAAAAGGCAGATTGTACATTAGTTA  50

seq1  CCATACAGTTGG-AAGCATTGCTATTAATCAGGCCTGGTTGAGAAGCTGA  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCATACAGTTGGAAAGCATTGCTATTAATCAGGCCTGGTTGAGAAGCTGA  100

seq1  GCAAAGACTGCTTTGGCTTTTAGGTTAGCTCCCCAGTACTGGGATTAGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACTGCTTTGGCTTTTAGGTTAGCTCCCCAGTACTGGGATTAGAT  150

seq1  GTGGCCATCACACTCTCAGTTCTGCCTTTTTCTTTTTAAAGTTCACTTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATCACACTCTCAGTTCTGCCTTTTTCTTTTTAAAGTTCACTTAG  200

seq1  TAAGCTGAGCAACAACAAATGACATGGCAATCTGCCTTCACTAATCTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAGCAACAACAAATGACATGGCAATCTGCCTTCACTAATCTGTG  250

seq1  CTTTGATAGGAGCCTCTAGAACACAAGTCCCTACCATGCATAGCCCAGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATAGGAGCCTCTAGAACACAAGTCCCTACCATGCATAGCCCAGGT  300

seq1  AGTGCTTATGGCACTGCGTCAGTACTGCTCGCAGTAATGAAATAATCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTATGGCACTGCGTCAGTACTGCTCGCAGTAATGAAATAATCACA  350

seq1  AAATTCACACTCCATCTATGTGACAGTGTGATAAGAAAAGGGTCCTGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACACTCCATCTATGTGACAGTGTGATAAGAAAAGGGTCCTGTGA  400

seq1  GACCAAGAAGACATTTTCTCAGTCCCTTCCCAGCTCACTTTATAGCACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGAAGACATTTTCTCAGTCCCTTCCCAGCTCACTTTATAGCACTT  450

seq1  GACCTTCATTCTGTCTTCTTTTTTATTTATTTATTTATTTTTTAATTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCATTCTGTCTTCTTTTTTATTTATTTATTTATTTTTTAATTTTT  500

seq1  TGGTTTTTCGAAATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTCGAAATAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACT  550

seq1  CACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGC  600

seq1  CTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTTATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCTTATTT  650

seq1  TGTCTTCTTAAAAACTGAATCCCTACCACTTAGGAACAACTAACTATACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTAAAAACTGAATCCCTACCACTTAGGAACAACTAACTATACA  700

seq1  CGTCAATGGTTT-CAGTGGACTGTTGAATTC  729
      |||||||||||| ||||||||||||||||||
seq2  CGTCAATGGTTTACAGTGGACTGTTGAATTC  731