BAC Information

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BAC

Clone NameB6Ng01-206M04
Chromosome13 (Build37)
Map Location 45,550,600 - 45,654,248
singlet/doubletdoublet
Overlap geneGmpr, Atxn1
Upstream geneJarid2, Dtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip
Downstream gene5033430I15Rik, ENSMUSG00000062282, Gm1574, Rbm24, Cap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206M04.bB6Ng01-206M04.g
ACCGA026094GA026095
length1,144680
definitionB6Ng01-206M04.b B6Ng01-206M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,550,600 - 45,551,746)(45,653,575 - 45,654,248)
sequence
gaattccaaagaggctttgtgtacagatcattaacctttaacccataatt
tcacaggcagctttgttttgcttcaggattacggctcgcacacattcatt
tgctggaggaaaacacgtaagagatagcagtcaaagggcagagagccgtg
gacccgcgttctaaggtctttggggtacaatcttatcacgttgctatgta
tcatccataacagctgcagataacatctgtccttttaatgcagaggaaag
tcacccttgttcgtctgcaggcaggctcctccgtgaggttcgcttaggga
gtgtctgtaaagcactggccctctccctaggcctcctttcataaacactg
caaggaaagaccctgggaatctgcattttagagtttcaaaattgattttc
agatagacacccggttttagaacggttttagttgcttttcttgttgctat
gaccaaaatagctgacaaaacgcaatttggggcaggaagggcctattttt
gcttactgtctgaggatccttccgttgtggccaggaacgtatcagcagtc
agggaaggcactgcagagtgctgacaggaagtggttgccaggctgtccaa
cttgatagaccctccatgacccacctccttttccagcaaatctctatcca
cctcttaaagggcctacaaccttctaaagccctgcttcttattggggacc
acaggaccttccacacccaaaccacaactggaacctctgacctaagtctg
tctccaacacagtggaaacctccccctcagcacatccttataggcaaaca
tgcactctgccctgggacccaagcacgtgggagctcttacctgggagtga
ccgactttaacaaagcttgaatttcatgggtttcttgtcttttgtctcat
tttgggtttgagttttttgtttgtttgttgtttgtttgtttgttttttga
gctaatgcaatgagctgcaagtcctatcttaatttcacttaaacctggcc
tcccaggatgggagcactttcccatacatgcctaatgacctgattttatc
ccccgaagccaggtgacggtggagggagatcacctctacagagcttgttc
cgctgtggcaccacccccagcacacattcattacagttttacac

gaattcagtggcaaacaggcacatactgttcttcacagagtttacctaac
atctcagtctgaccaatatttagcatgactatagctggcctttggagtca
cccacagtgcctcacaagtgggcactttgtggttgctgggcaaccagtag
atggttttaccagaccccctacaaacctggtatttggtagaatgctttga
acgatgtaaggaatttatatttgtctcagtagcttctgcccagggtctgt
gtatggccagtgcagctgtggctgcagttagcacacagagtatctctgta
aggcgagaggctggtaaacaaactctcaggtttttttcttcttatctagc
ctatgagtgtctgtgttgaataaaacactcaagggggcctaaggagatag
ctcagttggtaaagttctttccacgaaaacagaaggacttgagtttgatc
cccagacccatgtttaaggagtataagccaagcagtggtggcgcatgtct
ttaatcccagcacttgggaggtagaggcaggcagatttctgagttccagg
ccagcctggtctacaaagtgagttccaggacagcaagggctatacagaga
aaccttctctctctctctctctctctctctctctctctctctctctctct
ctctcactcacacactctcacacacacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_45550600_45551746
seq2: B6Ng01-206M04.b_45_1188

seq1  GAATTCCAAAGAGGCTTTGTGTACAGATCATTAACCTTTAACCCATAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGAGGCTTTGTGTACAGATCATTAACCTTTAACCCATAATT  50

seq1  TCACAGGCAGCTTTGTTTTGCTTCAGGATTACGGCTCGCACACATTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGCAGCTTTGTTTTGCTTCAGGATTACGGCTCGCACACATTCATT  100

seq1  TGCTGGAGGAAAACACGTAAGAGATAGCAGTCAAAGGGCAGAGAGCCGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGAAAACACGTAAGAGATAGCAGTCAAAGGGCAGAGAGCCGTG  150

seq1  GACCCGCGTTCTAAGGTCTTTGGGGTACAATCTTATCACGTTGCTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGCGTTCTAAGGTCTTTGGGGTACAATCTTATCACGTTGCTATGTA  200

seq1  TCATCCATAACAGCTGCAGATAACATCTGTCCTTTTAATGCAGAGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATAACAGCTGCAGATAACATCTGTCCTTTTAATGCAGAGGAAAG  250

seq1  TCACCCTTGTTCGTCTGCAGGCAGGCTCCTCCGTGAGGTTCGCTTAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTTGTTCGTCTGCAGGCAGGCTCCTCCGTGAGGTTCGCTTAGGGA  300

seq1  GTGTCTGTAAAGCACTGGCCCTCTCCCTAGGCCTCCTTTCATAAACACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTAAAGCACTGGCCCTCTCCCTAGGCCTCCTTTCATAAACACTG  350

seq1  CAAGGAAAGACCCTGGGAATCTGCATTTTAGAGTTTCAAAATTGATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGACCCTGGGAATCTGCATTTTAGAGTTTCAAAATTGATTTTC  400

seq1  AGATAGACACCCGGTTTTAGAACGGTTTTAGTTGCTTTTCTTGTTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACACCCGGTTTTAGAACGGTTTTAGTTGCTTTTCTTGTTGCTAT  450

seq1  GACCAAAATAGCTGACAAAACGCAATTTGGGGCAGGAAGGGCCTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAATAGCTGACAAAACGCAATTTGGGGCAGGAAGGGCCTATTTTT  500

seq1  GCTTACTGTCTGAGGATCCTTCCGTTGTGGCCAGGAACGTATCAGCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGTCTGAGGATCCTTCCGTTGTGGCCAGGAACGTATCAGCAGTC  550

seq1  AGGGAAGGCACTGCAGAGTGCTGACAGGAAGTGGTTGCCAGGCTGTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGCACTGCAGAGTGCTGACAGGAAGTGGTTGCCAGGCTGTCCAA  600

seq1  CTTGATAGACCCTCCATGACCCACCTCCTTTTCCAGCAAATCTCTATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAGACCCTCCATGACCCACCTCCTTTTCCAGCAAATCTCTATCCA  650

seq1  CCTCTTAAAGGGCCTACAACCTTCTAAAGCCCTGCTTCTTATTGGGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAAAGGGCCTACAACCTTCTAAAGCCCTGCTTCTTATTGGGGACC  700

seq1  ACAGGACCTTCCACACCCAAACCACAACTGGAACCTCTGACCTAAGTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACCTTCCACACCCAAACCACAACTGGAACCTCTGACCTAAGTCTG  750

seq1  TCTCCAACACAGTGGAAACCTCCCCCTCAGCACATCCTTATAGGCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAACACAGTGGAAACCTCCCCCTCAGCACATCCTTATAGGCAAACA  800

seq1  TGCACTCTGCCCTGGGACCCAAGCACGTGGGAGCTCTTACCTGGGAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTGCCCTGGGACCCAAGCACGTGGGAGCTCTTACCTGGGAGTGA  850

seq1  CCGACTTTAACAAAGCTTGAATTTCATGGGTTTCTTGTCTTTTGTCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTTTAACAAAGCTTGAATTTCATGGGTTTCTTGTCTTTTGTCTCAT  900

seq1  TTT-GGTTTGAGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTG  949
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGGTTTGAGTTTTTTGTTTGTTTG-TTGTTTGTTTGTTTGTTTTTTG  949

seq1  AGCTAATGCAATGAGCTGCAAAGTCCTATCTTAATTTCACTTAAA-CTGG  998
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  AGCTAATGCAATGAGCTGC-AAGTCCTATCTTAATTTCACTTAAACCTGG  998

seq1  -CTCCCAGGATGGAAGCACTTTCCCATACATGCCTAATGACCTGATTTTA  1047
       |||||||||||| ||||||||||||||||||||||||||||||||||| 
seq2  CCTCCCAGGATGGGAGCACTTTCCCATACATGCCTAATGACCTGATTTT-  1047

seq1  ATCCCCCGAAGCCAGGTGACGGTGGAAGGGGAGAATCACCTCTACAGAGC  1097
      ||||||||||||||||||||||||||  ||||| ||||||||||||||||
seq2  ATCCCCCGAAGCCAGGTGACGGTGGA--GGGAG-ATCACCTCTACAGAGC  1094

seq1  T--GTCCGCTGTTGGCACACACCCCAGCACACAATCATTTACAGTTTTAC  1145
      |   ||||||| ||||||   |||||||||||| ||| ||||||||||||
seq2  TTGTTCCGCTG-TGGCACCACCCCCAGCACACATTCA-TTACAGTTTTAC  1142

seq1  AC  1147
      ||
seq2  AC  1144


seq1: chr13_45653575_45654248
seq2: B6Ng01-206M04.g_66_745 (reverse)

seq1  --TGTGTGTGT----GTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAG  44
        |||||||||    ||||||| ||| |||||||||||||||||||||||
seq2  TGTGTGTGTGTGAGAGTGTGTGAGTGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTCTCTGTATAGCCCTTGCTG  94
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAAGGTTTCTCTGTATAGCCCTTGCTG  100

seq1  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATCTGC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTAGACCAGGCTGGCCTGGAACTCAGAAATCTGC  150

seq1  CTGCCTCTACCTCCCAAGTGCTGGGATTAAAGACATGCGCCACCACTGCT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTACCTCCCAAGTGCTGGGATTAAAGACATGCGCCACCACTGCT  200

seq1  TGGCTTATACTCCTTAAACATGGGTCTGGGGATCAAACTCAAGTCCTTCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTATACTCCTTAAACATGGGTCTGGGGATCAAACTCAAGTCCTTCT  250

seq1  GTTTTCGTGGAAAGAACTTTACCAACTGAGCTATCTCCTTAGGCCCCCTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCGTGGAAAGAACTTTACCAACTGAGCTATCTCCTTAGGCCCCCTT  300

seq1  GAGTGTTTTATTCAACACAGACACTCATAGGCTAGATAAGAAGAAAAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTTATTCAACACAGACACTCATAGGCTAGATAAGAAGAAAAAAA  350

seq1  CCTGAGAGTTTGTTTACCAGCCTCTCGCCTTACAGAGATACTCTGTGTGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAGTTTGTTTACCAGCCTCTCGCCTTACAGAGATACTCTGTGTGC  400

seq1  TAACTGCAGCCACAGCTGCACTGGCCATACACAGACCCTGGGCAGAAGCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCAGCCACAGCTGCACTGGCCATACACAGACCCTGGGCAGAAGCT  450

seq1  ACTGAGACAAATATAAATTCCTTACATCGTTCAAAGCATTCTACCAAATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGACAAATATAAATTCCTTACATCGTTCAAAGCATTCTACCAAATA  500

seq1  CCAGGTTTGTAGGGGGTCTGGTAAAACCATCTACTGGTTGCCCAGCAACC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTGTAGGGGGTCTGGTAAAACCATCTACTGGTTGCCCAGCAACC  550

seq1  ACAAAGTGCCCACTTGTGAGGCACTGTGGGTGACTCCAAAGGCCAGCTAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGCCCACTTGTGAGGCACTGTGGGTGACTCCAAAGGCCAGCTAT  600

seq1  AGTCATGCTAAATATTGGTCAGACTGAGATGTTAGGTAAACTCTGTGAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCTAAATATTGGTCAGACTGAGATGTTAGGTAAACTCTGTGAAG  650

seq1  AACAGTATGTGCCTGTTTGCCACTGAATTC  674
      ||||||||||||||||||||||||||||||
seq2  AACAGTATGTGCCTGTTTGCCACTGAATTC  680


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