BAC Information

Click to search

BAC

Clone NameB6Ng01-207D18
Chromosome13 (Build37)
Map Location 100,087,945 - 100,196,431
singlet/doubletdoublet
Overlap genePtcd2, Mrps27, Mtap1b
Upstream geneFoxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207D18.bB6Ng01-207D18.g
ACCGA026445GA026446
length1,1751,037
definitionB6Ng01-207D18.b B6Ng01-207D18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,087,945 - 100,089,127)(100,195,394 - 100,196,431)
sequence
gaattcctagcacccacatggcagctcacaattgtctataactcctgttt
cagaggatctgactccctcacacatgcaggcaaaacaccaatatacataa
aatttaaaagaaatagtaactaatacattttaagtgctcacctctaacag
tgtgcattagttatcttgctactgaggctttaaaacaggtatgacggctg
gtctccatcagcagaggccagcagtctccctctcggggaagcagggggca
ggaaggttggtatttattattcatgaagttgtttgtgctttttccatttt
tgtttttgttaatgagtggttgtggcctaacaaagagcaccacaattatc
taacgcattacagccatttacacaaggtaagttggggaagcatggtctat
tctctaaggctttgcaggtacaggaatcaacttttgctgttgtttacaaa
acaccaggcacacacagaagccattattttctaagaagaattttttgttg
ttgctttgtttttttttttttttaatgaggctgtctaacgctttacagaa
cacaggcaaactctttctgataactgtgagatgggctcctgtgcatgatg
agagcaggaagaaggcctcatgtatccctgtgattcctcagctagctggg
agtactttaagtgccagcagctaggtagccacaaagttaaggtttcacag
cacgggcacagcaccaggcatactgcctgcctcacattcactgtgaactc
acactcactgttagcctgtgcactgactatcagacccacttaccaatgag
caaactgagaacctgcagccacctggaaaacctcaggagtccttaggatt
ctggaatatcttaggaactgttttagccgcagaagaggtatctctctatc
tacctttatattatataataagtaataatttataaatattatatatactg
ttatatgcactatatacaaatattatttatattataactactttataaaa
atataagtattatattgtatatatttcacagtagtaagataccagaactg
catctagtgtcctatccctaagtaggttctggctagctaggtcattcctc
tcttgaaggatgaatgagtaagaaccagaagtttctctgatctaagttct
gattctaatgaacacgttttggtct
gaattccacagtgttcacatgagaagtaccaaagtcggtactcccctcct
acagcacagactctgttttcaggccaatgtgtgggcttctgggggtttga
gctacaatattaaacttcgtgcactaagtgtggaatatataggctgtaca
acatctgccccatgttaatggaaacacgagaaacaaacagttctcaacac
cacttcgttaaaaagccatctgaaatttacatgcaagttcctaggtaatt
tagattctaggcttgaactcttcccttcaatgacatcccaaaaaattttt
tttaaattaaaaaaaaaaaccttctaatttttacagcttggttgtggttc
ttggaaaacatcagttgaaaacttcattggtatttttctggtaaaacggc
attttttttccttttatccctttctgctagtgatccaacagacaccttgt
tctgtttttactctggcatctatccctgctgtcctttaaatatctccttt
tctccccctccgtaggtgactctgattccgacacatgactccgaggtgat
gagggagtggtaccaggagacccacgagaagcagcaggacctcaacatca
tggtcttagcaagcagcagtacagtggtcatgcaagacgagtccttcccc
gcatgcaagatagaactgtagagaccgcagccggccacaccacaggattt
gaactgtgtttccagaaattcttgaatttgaaactaccttttctaaaacg
tccattcatccaattaagtcactgaacagttattacctgccagatgctat
actatgtcatggtgatgcaagtcactgatagttctcaatttttgctgact
gctaagggaagtaaccatattcccacaatagatttcgagttactgcaaaa
ttgcctacccccgttcatctctgctgaacattcggaagccatgcactcac
gcacccaactgacttctgctaggtattggcatttatcataagagagagaa
agagaagggaagagagtcagcggaggggaggagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100087945_100089127
seq2: B6Ng01-207D18.b_42_1216

seq1  GAATTCCTAGCACCCACATGGCAGCTCACAATTGTCTATAACTCCTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCACCCACATGGCAGCTCACAATTGTCTATAACTCCTGTTT  50

seq1  CAGAGGATCTGACTCCCTCACACATGCAGGCAAAACACCAATATACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGATCTGACTCCCTCACACATGCAGGCAAAACACCAATATACATAA  100

seq1  AATTTAAAAGAAATAGTAACTAATACATTTTAAGTGCTCACCTCTAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAGAAATAGTAACTAATACATTTTAAGTGCTCACCTCTAACAG  150

seq1  TGTGCATTAGTTATCTTGCTACTGAGGCTTTAAAACAGGTATGACGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTAGTTATCTTGCTACTGAGGCTTTAAAACAGGTATGACGGCTG  200

seq1  GTCTCCATCAGCAGAGGCCAGCAGTCTCCCTCTCGGGGAAGCAGGGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATCAGCAGAGGCCAGCAGTCTCCCTCTCGGGGAAGCAGGGGGCA  250

seq1  GGAAGGTTGGTATTTATTATTCATGAAGTTGTTTGTGCTTTTTCCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTTGGTATTTATTATTCATGAAGTTGTTTGTGCTTTTTCCATTTT  300

seq1  TGTTTTTGTTAATGAGTGGTTGTGGCCTAACAAAGAGCACCACAATTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTAATGAGTGGTTGTGGCCTAACAAAGAGCACCACAATTATC  350

seq1  TAACGCATTACAGCCATTTACACAAGGTAAGTTGGGGAAGCATGGTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGCATTACAGCCATTTACACAAGGTAAGTTGGGGAAGCATGGTCTAT  400

seq1  TCTCTAAGGCTTTGCAGGTACAGGAATCAACTTTTGCTGTTGTTTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGGCTTTGCAGGTACAGGAATCAACTTTTGCTGTTGTTTACAAA  450

seq1  ACACCAGGCACACACAGAAGCCATTATTTTCTAAGAAGAATTTTTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGGCACACACAGAAGCCATTATTTTCTAAGAAGAATTTTTTGTTG  500

seq1  TTGCTTTGTTTTTTTTTTTTTTTAATGAGGCTGTCTAACGCTTTACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGTTTTTTTTTTTTTTTAATGAGGCTGTCTAACGCTTTACAGAA  550

seq1  CACAGGCAAACTCTTTCTGATAACTGTGAGATGGGCTCCTGTGCATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAACTCTTTCTGATAACTGTGAGATGGGCTCCTGTGCATGATG  600

seq1  AGAGCAGGAAGAAGGCCTCATGTATCCCTGTGATTCCTCAGCTAGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGAAGAAGGCCTCATGTATCCCTGTGATTCCTCAGCTAGCTGGG  650

seq1  AGTACTTTAAGTGCCAGCAGCTAGGTAGCCACAAAGTTAAGGTTTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTAAGTGCCAGCAGCTAGGTAGCCACAAAGTTAAGGTTTCACAG  700

seq1  CACGGGCACAGCACCAGGCATACTGCCTGCCTCACATTCACTGTGAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGCACAGCACCAGGCATACTGCCTGCCTCACATTCACTGTGAACTC  750

seq1  ACACTCACTGTTAGCCTGTGCACTGACTATCAGACCCACTTACCAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACTGTTAGCCTGTGCACTGACTATCAGACCCACTTACCAATGAG  800

seq1  CAAACTGAGAACCTGCAGCCACCTGGAAAACCTCAGGAGTCCTTAGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAGAACCTGCAGCCACCTGGAAAACCTCAGGAGTCCTTAGGATT  850

seq1  CTGGAAATATCTTAGGAACTGTTTTAGCCGCAGAAGAGGTATCTCTCTAT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGG-AATATCTTAGGAACTGTTTTAGCCGCAGAAGAGGTATCTCTCTAT  899

seq1  CTACCTTTATATTATATAAATAAGTAATAATTTATAAATATTATATATAC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTACCTTTATATTATAT-AATAAGTAATAATTTATAAATATTATATATAC  948

seq1  TGTTTATATGCACTATATACAAATA-TATTTATATATTAAACTACTTTAT  999
      || |||||||||||||||||||||| ||||||||| |  |||||||||||
seq2  TG-TTATATGCACTATATACAAATATTATTTATAT-TATAACTACTTTAT  996

seq1  -AAAATATAAGTATATATGTAATA-ATATTTCACAGTAGTAAAGATACCA  1047
       ||||||||||||| ||| |  || ||||||||||||||| |||||||||
seq2  AAAAATATAAGTAT-TATATTGTATATATTTCACAGTAGT-AAGATACCA  1044

seq1  GAACTGGAATCTAGTGTCCTAT-CCTAAATTAGTTCT-GCTAGCTTAAGT  1095
      ||||| | |||||||||||||| ||||| |  ||||| |||||| || ||
seq2  GAACT-GCATCTAGTGTCCTATCCCTAAGTAGGTTCTGGCTAGC-TAGGT  1092

seq1  CATTTCCTCAACCTGAAAGATGAATGAGTTAAGACACAGAAGGTTTCTCT  1145
      || ||||||  | |||| |||||||||| |||||  ||||| ||||||||
seq2  CA-TTCCTC-TCTTGAAGGATGAATGAG-TAAGAACCAGAA-GTTTCTCT  1138

seq1  AATTCTAAAATTTCTGATTCT-ATGGACA-GTTTTGGTCT  1183
       | |||  || |||||||||| ||| ||| ||||||||||
seq2  GA-TCT--AAGTTCTGATTCTAATGAACACGTTTTGGTCT  1175

seq1: chr13_100195394_100196431
seq2: B6Ng01-207D18.g_66_1102 (reverse)

seq1  CTCTCTCCCTCCCCTCCCGCTGACTCTCTTTCCCTCTCTTTCTCTCTC-T  49
      |||||| |||||||| |||||||||||||| || |||||||||||||| |
seq2  CTCTCT-CCTCCCCT-CCGCTGACTCTCTTCCCTTCTCTTTCTCTCTCTT  48

seq1  ATGATAAATGCCAATACCTAGCAGAAGTCAGTTGGGTGCGTGAGTGCATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAATGCCAATACCTAGCAGAAGTCAGTTGGGTGCGTGAGTGCATG  98

seq1  GCTTCCGAATGTTCAGCAGAGATGAACGGGGGTAGGCAATTTTGCAGTAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCGAATGTTCAGCAGAGATGAACGGGGGTAGGCAATTTTGCAGTAA  148

seq1  CTCGAAATCTATTGTGGGAATATGGTTACTTCCCTTAGCAGTCAGCAAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAATCTATTGTGGGAATATGGTTACTTCCCTTAGCAGTCAGCAAAA  198

seq1  ATTGAGAACTATCAGTGACTTGCATCACCATGACATAGTATAGCATCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAACTATCAGTGACTTGCATCACCATGACATAGTATAGCATCTGG  248

seq1  CAGGTAATAACTGTTCAGTGACTTAATTGGATGAATGGACGTTTTAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAATAACTGTTCAGTGACTTAATTGGATGAATGGACGTTTTAGAAA  298

seq1  AGGTAGTTTCAAATTCAAGAATTTCTGGAAACACAGTTCAAATCCTGTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTTCAAATTCAAGAATTTCTGGAAACACAGTTCAAATCCTGTGG  348

seq1  TGTGGCCGGCTGCGGTCTCTACAGTTCTATCTTGCATGCGGGGAAGGACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCGGCTGCGGTCTCTACAGTTCTATCTTGCATGCGGGGAAGGACT  398

seq1  CGTCTTGCATGACCACTGTACTGCTGCTTGCTAAGACCATGATGTTGAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTGCATGACCACTGTACTGCTGCTTGCTAAGACCATGATGTTGAGG  448

seq1  TCCTGCTGCTTCTCGTGGGTCTCCTGGTACCACTCCCTCATCACCTCGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGCTTCTCGTGGGTCTCCTGGTACCACTCCCTCATCACCTCGGA  498

seq1  GTCATGTGTCGGAATCAGAGTCACCTACGGAGGGGGAGAAAAGGAGATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTCGGAATCAGAGTCACCTACGGAGGGGGAGAAAAGGAGATAT  548

seq1  TTAAAGGACAGCAGGGATAGATGCCAGAGTAAAAACAGAACAAGGTGTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGACAGCAGGGATAGATGCCAGAGTAAAAACAGAACAAGGTGTCT  598

seq1  GTTGGATCACTAGCAGAAAGGGATAAAAGGAAAAAAAATGCCGTTTTACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCACTAGCAGAAAGGGATAAAAGGAAAAAAAATGCCGTTTTACC  648

seq1  AGAAAAATACCAATGAAGTTTTCAACTGATGTTTTCCAAGAACCACAACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATACCAATGAAGTTTTCAACTGATGTTTTCCAAGAACCACAACC  698

seq1  AAGCTGTAAAAATTAGAAGGTTTTTTTTTTTAATTTAAAAAAAATTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAAAAATTAGAAGGTTTTTTTTTTTAATTTAAAAAAAATTTTTT  748

seq1  GGGATGTCATTGAAGGGAAGAGTTCAAGCCTAGAATCTAAATTACCTAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTCATTGAAGGGAAGAGTTCAAGCCTAGAATCTAAATTACCTAGG  798

seq1  AACTTGCATGTAAATTTCAGATGGCTTTTTAACGAAGTGGTGTTGAGAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCATGTAAATTTCAGATGGCTTTTTAACGAAGTGGTGTTGAGAAC  848

seq1  TGTTTGTTTCTCGTGTTTCCATTAACATGGGGCAGATGTTGTACAGCCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTCTCGTGTTTCCATTAACATGGGGCAGATGTTGTACAGCCTA  898

seq1  TATATTCCACACTTAGTGCACGAAGTTTAATATTGTAGCTCAAACCCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCACACTTAGTGCACGAAGTTTAATATTGTAGCTCAAACCCCCA  948

seq1  GAAGCCCACACATTGGCCTGAAAACAGAGTCTGTGCTGTAGGAGGGGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCACACATTGGCCTGAAAACAGAGTCTGTGCTGTAGGAGGGGAGT  998

seq1  ACCGACTTTGGTACTTCTCATGTGAACACTGTGGAATTC  1038
      |||||||||||||||||||||||||||||||||||||||
seq2  ACCGACTTTGGTACTTCTCATGTGAACACTGTGGAATTC  1037