BAC Information

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BAC

Clone NameB6Ng01-208H16
Chromosome4 (Build37)13 (Build37)
Map Location 146,555,241 - 146,556,42666,009,578 - 66,009,779
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H16.bB6Ng01-208H16.g
ACCGA027350GA027351
length1,1841,007
definitionB6Ng01-208H16.b B6Ng01-208H16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,555,241 - 146,556,426)(66,009,578 - 66,009,779)
sequence
gaattcctcggcctttatcatcataccaatccttagttaaattaactggt
aaataaacataatcaggttgcttaacaatcaaaaaattacttaaggtata
attaacacagttagttatttgacaattagtacagttaacagtattattat
ctatcaataaattcccactcaaagaagcctatggctctggaacacacgaa
catacaaaaacttcagtcttattgtgtttgtcctgaaatgccatgatatt
ccacataggaatccaggtaattgtggacgcccactcgccagcaagtaaga
tgccacaacaggatccttctgcaacatgtttattgggagagcatggactg
cgtaggcgaaagaccccgagccccagaaatggtgctacttatataggcct
agggagtgacatgtccataactgattggttatgctaccagtacctcatta
atatgcctcgagccaggcagtgactcggcaaaaaactctggcacatgcgc
acattggttgtttacccatattcatgggcattggcttactgaaaccagtg
ccatcttgtaatggcgtttgcggcttcccacatctccccctttttattgt
aataaaatgatgctggattaggcctatgcaattatgtccatccgctacgg
ctcctgttttaggtcgttcctctgtgtcacagccttacccgtcatagggt
aaccctatcgccaccaggccccgtgtcttaggttgctctgtgcatgagga
aagttgcccatctttggataatgcaatgctgtgtgacagtaattgctaaa
tgacttattttgttcgtcctgaaatgtcatgatattcccgataggaagcc
aggtgatgttaaattcttttaactgttatcatccaagggctgcaatggct
tttcttaatgaagaaaattaagttttcattattttttgtcccaattccat
gaaccaaattattaggaggatgattagtataatccaaaatatctcaatca
cacaaggtggtattagagcaaaggcattgaaattgtaatatatgttcaat
cagaatactctcctaaatatttgccttgaatgacattaacagcaatattc
ttacagtctcatccaagtgacaggatgaatataaggtgattgaacatatg
ccaataactatgcagagctgcttcgatgtaacat
gaattctcagactgcttttttcagtaaagcatttgccacattcattgcat
ttgtaaggtttctctcctgtatgaattctctgatgagttctcagactgct
tttttcagtaaagcatttgccacattcactgcatttgtaaggtttctctc
ctgtatgaattctctgatgaattctcagactgcttttttcagtaaagcat
ttgccacattcagggcatttgtaaggtttctctcctgtatgaattctctg
atgaatagtaagattggattgttgggtaaagcatttgtcacattcactgc
atttgtaaggtttctctcctgtatgaattctctgatgaataccaagatgg
aattttcgggtaaagcatttgtcacattcactgcatttgtaagttttctc
tcctgtatgaattctctgatgaattctcagactgcttttttcagtaaagc
atttgccacattcactgcatttgtaaggtttctctcctgtatgaattctc
tgatgaatactaagacaggattgttgggtaaagcatttgtcacattcacg
gcatttgtaaggtttctctcctgtatgaattctctgatgaatactaagat
tggattgtttggtaaagcatttgtcacattcactgcatttgtaaggtttc
tctcctgtatgaattctctgatgaattctcagactgcttttttcagtaaa
gcatttgccacattcactgcatttgtaaggtttctctcctgtatgaattc
tctgatgaatactaagacaggattgttgggtaaagcatttgtcacattca
ctgcatttgtaaggtttctctcctgtatgaattctctgatgaatactaaa
gattggattgttggtaaagcatttgccacattcactgcattgtaaggttt
ctctcctgtatgaattctctgatgaattctcagactgcttttttcagtaa
agcatttgccacattcactgcatttgtaaaggtttctctccctgtatgaa
ttctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146555241_146556426
seq2: B6Ng01-208H16.b_47_1230

seq1  GAATTCCTAGGCCTTTATCATCATACCAATCCTTAGTTAAATTAACTGGT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGGCCTTTATCATCATACCAATCCTTAGTTAAATTAACTGGT  50

seq1  AAATAAACATAATCAGGTTGCTTAACAATCAAAAAATTACTTAAGGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACATAATCAGGTTGCTTAACAATCAAAAAATTACTTAAGGTATA  100

seq1  ATTAACACAGTTAGTTATTTGACAATTAGTACAGTTAACAGTATTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACACAGTTAGTTATTTGACAATTAGTACAGTTAACAGTATTATTAT  150

seq1  CTATCAATAAATTCCCACTCAAAGAAGCCTATGGCTCTGGAACACACGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATAAATTCCCACTCAAAGAAGCCTATGGCTCTGGAACACACGAA  200

seq1  CATACAAAAACTTCAGTCTTATTGTGTTTGTCCTGAAATGCCATGATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAAAACTTCAGTCTTATTGTGTTTGTCCTGAAATGCCATGATATT  250

seq1  CCACATAGGAATCCAGGTAATTGTGGACGCCCACTCGCCAGCAAGTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAGGAATCCAGGTAATTGTGGACGCCCACTCGCCAGCAAGTAAGA  300

seq1  TGCCACAACAGGATCCTTCTGCAACATGTTTATTGGGAGAGCATGGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAACAGGATCCTTCTGCAACATGTTTATTGGGAGAGCATGGACTG  350

seq1  CGTAGGCGAAAGACCCCGAGCCCCAGAAATGGTGCTACTTATATAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGCGAAAGACCCCGAGCCCCAGAAATGGTGCTACTTATATAGGCCT  400

seq1  AGGGAGTGACATGTCCATAACTGATTGGTTATGCTACCAGTACCTCATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGACATGTCCATAACTGATTGGTTATGCTACCAGTACCTCATTA  450

seq1  ATATGCCTCGAGCCAGGCAGTGACTCTGCAAAAAACTCTGGCACATGCGC  500
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATATGCCTCGAGCCAGGCAGTGACTCGGCAAAAAACTCTGGCACATGCGC  500

seq1  ACATTGGTTGTTTACCCATATTCATGGGCATTGGCTTACTGAAACCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGTTGTTTACCCATATTCATGGGCATTGGCTTACTGAAACCAGTG  550

seq1  CCATCTTGTAATGGCGTTTGCGGCTTCCCACATCTCCCCCTTTTTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGTAATGGCGTTTGCGGCTTCCCACATCTCCCCCTTTTTATTGT  600

seq1  AATAAAATGATGCTGGATTAGGCCTATGCAATTATGTCCATCCGCTACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGATGCTGGATTAGGCCTATGCAATTATGTCCATCCGCTACGG  650

seq1  CTCCTGTTTTAGGTCGTTCCTCTGTGTCACAGCCTTACCCGTCATAGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTTAGGTCGTTCCTCTGTGTCACAGCCTTACCCGTCATAGGGT  700

seq1  AACCCTATCGCCACCAGGCCCCGTGTCTTAGGTTGCTCTGTGCATGAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTATCGCCACCAGGCCCCGTGTCTTAGGTTGCTCTGTGCATGAGGA  750

seq1  AAGTTGCCCATCTTTGGATAATGCAATGCTGTGTGACAGTAATTGCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCCCATCTTTGGATAATGCAATGCTGTGTGACAGTAATTGCTAAA  800

seq1  TGACTTATTTTGTTCGTCCTGAAATGTCATGATATTCCCTATAGGAAGCC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGACTTATTTTGTTCGTCCTGAAATGTCATGATATTCCCGATAGGAAGCC  850

seq1  AGGTGATGTT-AATTCTTTTAACTGTTATCATCCCAAGGGCTGCAATGGC  899
      |||||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  AGGTGATGTTAAATTCTTTTAACTGTTATCAT-CCAAGGGCTGCAATGGC  899

seq1  TTTTCTTAATGAAGAAAAATAAG-TTTCATTATTTTTTGTCCCAATTCCA  948
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TTTTCTTAATGAAGAAAATTAAGTTTTCATTATTTTTTGTCCCAATTCCA  949

seq1  TGAACCAAATTAATAGGAGGATGATTAGTATAATCCAAAATATTCCAATC  998
      |||||||||||| ||||||||||||||||||||||||||||||  |||||
seq2  TGAACCAAATTATTAGGAGGATGATTAGTATAATCCAAAATATCTCAATC  999

seq1  ACACAGGGTGGTATTAGAGCAAAGGCA-TGAAATTGTAATATATG-TCCA  1046
      ||||| ||||||||||||||||||||| ||||||||||||||||| || |
seq2  ACACAAGGTGGTATTAGAGCAAAGGCATTGAAATTGTAATATATGTTCAA  1049

seq1  TCAGAATACTCTCCTAAATATTTGGTTTGATTGACATAAACAGTAATAT-  1095
      ||||||||||||||||||||||||  |||| |||||| ||||| ||||| 
seq2  TCAGAATACTCTCCTAAATATTTGCCTTGAATGACATTAACAGCAATATT  1099

seq1  -CTACAGTCTCATCCCAAGTGACAGGATGAATTATAGGTGGATTTGGAAC  1144
        ||||||||||| ||||||||||||||||| |||| |  ||||  ||||
seq2  CTTACAGTCTCAT-CCAAGTGACAGGATGAA-TATAAGGTGATT--GAAC  1145

seq1  ATATGCCCAATAAACTTATGCAGAGCTGCCTCGATGTAACAT  1186
      ||||| |||||||   ||||||||||||| ||||||||||||
seq2  ATATG-CCAATAA--CTATGCAGAGCTGCTTCGATGTAACAT  1184

seq1: chr13_66009578_66009779
seq2: B6Ng01-208H16.g_101_302 (reverse)

seq1  CAGGAGAGAAACCTTATGAATGTAATTGATATGAGAAAACATTTACATAT  50
      ||||||||||||||||  ||||   |  || ||  |||   |||||  | 
seq2  CAGGAGAGAAACCTTACAAATGCCCTGAATGTGGCAAATGCTTTACTGAA  50

seq1  CACAGTCATTTCCAAGTACATAAATGAGCACATAGTTGAGAGAAGCCCTG  100
       | ||   | |   | | ||| |  ||   ||||   ||||||| || | 
seq2  AAAAGCAGTCTGAGAATTCATCAGAGAATTCATACAGGAGAGAAACCTTA  100

seq1  TGATCGTAATAAAAGTGTTAAAGCCTTTGCGTGTCACTGTACTCTCCAAA  150
        |  | | | || |||  |||  |||| |     |  | | |||   ||
seq2  CAAATGCAGTGAATGTGGCAAATGCTTTACTGAAAAAAGCAGTCTGAGAA  150

seq1  TACTTAAAGGAACACACGTTTTAGAGAAACCTTACAAATGCAATGAATGT  200
        | | |  |||  ||      ||||||||||||||||||||||||||||
seq2  CTCATCAGAGAATTCATACAGGAGAGAAACCTTACAAATGCAATGAATGT  200

seq1  GG  202
      ||
seq2  GG  202