BAC Information

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BAC

Clone NameB6Ng01-208H20
Chromosome13 (Build37)
Map Location 10,007,424 - 10,148,103
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneLOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208H20.bB6Ng01-208H20.g
ACCGA027358GA027359
length1,1261,066
definitionB6Ng01-208H20.b B6Ng01-208H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,146,932 - 10,148,103)(10,007,424 - 10,008,495)
sequence
gaattcttactgttcatattctccattagaatatttgagataacccaagg
ctgatgttttctttataagttcaatttactacaagtatgagaaccacttg
agtgattttatttttcatttagtctttttttcaaacctaaaagtgtcaca
cagatcaattaatttttgaggttattcaaggtcaccctagtatcagcatc
caagggtgctcctggaactttaggggcattcctggtcctttcaagatttc
aaataggaaaacaagcaaattattggaaaccaactacatttataatattt
ctgaaacacttcttcctagtcaccttctccctctcaacctgtacaataag
tagatttttctcagagccatattggaaggacagaccccatggtcaagtag
ggaaacccacctgtctcctatgaagccaacaccaaggaatttacaaagac
aggaatcatgtcacttctgcttgctcagaagatattgttggtcatttttt
aaaaggtcattatattcatgtttaattttgttaattatattgtgagttta
ttactttcagtttgggatattaatagtttctcaaacattagattttaaat
agaaatgggtttaatctaccaaaaataaaatgaaggggagcccgagtgtt
taggtcagtggtaaagtacttgtctggcatgcaagaagccctggatgcaa
tccccaacactgtaaagcaaacaagcaagaatgaatgaataaatgaacaa
atgtaaaatgaatgaatgaatggatgaataaataaataaatataaatgta
aaatgtaaaatataaaaaccaccacacaggtagccaagacctaaagccca
ggctgtagcacactgtgtccctcctcagtaagtccctgaattctcctcac
ccatgcaaattttgtttcttcttcactgctagcatttcagttgtgtgaaa
atgtgtcaatttctaaactcaaacaacagaagtgaatttccctatgagaa
gaataattaaaaacaacattcatctactatagtcaaatacagcaagctac
ctgtgttcttcctgggaacacattactgtccactgtgtgggtgctgcttt
cttccataataagatgatggtgatgg
gaattcttttgtgacttttcagaagtctcaggtttggtggaagctgatgg
aaggtacagatgatgatgatgatgatgaggaggaggacaatgatgatttt
gaagcatgccagcatcatttatacacatcattttatttaccagaatatct
attagtgttgataggtattatatttgatgaaaactctgctagccaaatac
cttaatctcaaaggtaaatgcattttcattttttcctaagttcaaatttt
gttctaaatcctgatggttcaaacctctcttttttaaacatggagagact
aatggctttctagacaaagcagtggagaaactgtagtgtaggtgttgtga
gctacctcctctcctccccataccttgccccaagagagcatagtgagtag
ggttattgttctagttagggtttcttttgctgtgatgaaacaccatgact
aaaagcaactcggggaggaaaggggttaattcagttttcacttcaatgtc
atagaccatcactgagggaactcaagacgggaacttaaacggcagaaata
taaaggcaggaattgattcggaggccgtagaagggcactgcttactggct
tgcttgctcagccttttcttattgcacccaggactaccagcccaggatgg
atctacacacaataggctgtcccctcccccatcagtcaccaattaagaaa
atgtcttacaggcatagctacaactcaagcttaaggaagaacttcctcaa
aggaggctccctctgctctgatatctatagcttgtgttacgttgacagaa
agctagacagcacagttgtcctactcttgtattaaaatatgccaagacaa
ctttatttatatctcactaataaatccacacaaagagcactgaccacatc
acatctccagaattcacttcttgggtcccgacctgagacacccagtgctg
aagaaacatgtttgttacattgggatgactttcacaatacttttgggagc
cattggggtactttatattgtactgatgggacaaatactagagagcgagt
tattatccagattcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10146932_10148103
seq2: B6Ng01-208H20.b_44_1169 (reverse)

seq1  CCATCACCATCATCATCACCACCATCACTACCAGCATCACCATCACTACC  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGCATCACCATCATCCTTATATGGAAGAAAGCAGCACC--CACAGTGAAC  98
        ||||||||||||| |  |||||||||||||||||||  ||||||| ||
seq2  -CCATCACCATCATCTTATTATGGAAGAAAGCAGCACCCACACAGTGGAC  49

seq1  AAGTAATGTGTCCCCAGGAAAGAACACAGGTAGCTTGCTGTATTTGACTA  148
       |||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  -AGTAATGTGTTCCCAGG-AAGAACACAGGTAGCTTGCTGTATTTGACTA  97

seq1  TAGTAGATGAATGT--GTTTTAATTATTCTTCTCATAGGGAAATTCAC-T  195
      ||||||||||||||   ||||||||||||||||||||||||||||||| |
seq2  TAGTAGATGAATGTTGTTTTTAATTATTCTTCTCATAGGGAAATTCACTT  147

seq1  CTGTTGTTTGAGTTTAGAAATTGACACATTTTCACACAACTGAAATGCTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTTTGAGTTTAGAAATTGACACATTTTCACACAACTGAAATGCTA  197

seq1  GCAGTG-AGAAGAAACAAAA-TTGCATGGGTGAGGAGAATTCAGGGACTT  293
      |||||| ||||||||||||| |||||||||||||||||||||||||||||
seq2  GCAGTGAAGAAGAAACAAAATTTGCATGGGTGAGGAGAATTCAGGGACTT  247

seq1  ACTGAGGAGGGACACAGTGTGCTACAGCCTGGGCTTTAGGTCTTGGCTAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGAGGGACACAGTGTGCTACAGCCTGGGCTTTAGGTCTTGGCTAC  297

seq1  CTGTGTGGTGGTTTTTATATTTTACATTTTACATTTATATTTATTTATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTGGTTTTTATATTTTACATTTTACATTTATATTTATTTATTT  347

seq1  ATTCATCCATTCATTCATTCATTTTACATTTGTTCATTTATTCATTCATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCATTCATTCATTCATTTTACATTTGTTCATTTATTCATTCATT  397

seq1  CTTGCTTGTTTGCTTTACAGTGTTGGGGATTGCATCCAGGGCTTCTTGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGTTTGCTTTACAGTGTTGGGGATTGCATCCAGGGCTTCTTGCA  447

seq1  TGCCAGACAAGTACTTTACCACTGACCTAAACACTCGGGCTCCCCTTCAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACAAGTACTTTACCACTGACCTAAACACTCGGGCTCCCCTTCAT  497

seq1  TTTATTTTTGGTAGATTAAACCCATTTCTATTTAAAATCTAATGTTTGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTGGTAGATTAAACCCATTTCTATTTAAAATCTAATGTTTGAG  547

seq1  AAACTATTAATATCCCAAACTGAAAGTAATAAACTCACAATATAATTAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTAATATCCCAAACTGAAAGTAATAAACTCACAATATAATTAAC  597

seq1  AAAATTAAACATGAATATAATGACCTTTTAAAAAATGACCAACAATATCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAACATGAATATAATGACCTTTTAAAAAATGACCAACAATATCT  647

seq1  TCTGAGCAAGCAGAAGTGACATGATTCCTGTCTTTGTAAATTCCTTGGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCAAGCAGAAGTGACATGATTCCTGTCTTTGTAAATTCCTTGGTG  697

seq1  TTGGCTTCATAGGAGACAGGTGGGTTTCCCTACTTGACCATGGGGTCTGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCATAGGAGACAGGTGGGTTTCCCTACTTGACCATGGGGTCTGT  747

seq1  CCTTCCAATATGGCTCTGAGAAAAATCTACTTATTGTACAGGTTGAGAGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATATGGCTCTGAGAAAAATCTACTTATTGTACAGGTTGAGAGG  797

seq1  GAGAAGGTGACTAGGAAGAAGTGTTTCAGAAATATTATAAATGTAGTTGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTGACTAGGAAGAAGTGTTTCAGAAATATTATAAATGTAGTTGG  847

seq1  TTTCCAATAATTTGCTTGTTTTCCTATTTGAAATCTTGAAAGGACCAGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATAATTTGCTTGTTTTCCTATTTGAAATCTTGAAAGGACCAGGA  897

seq1  ATGCCCCTAAAGTTCCAGGAGCACCCTTGGATGCTGATACTAGGGTGACC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCTAAAGTTCCAGGAGCACCCTTGGATGCTGATACTAGGGTGACC  947

seq1  TTGAATAACCTCAAAAATTAATTGATCTGTGTGACACTTTTAGGTTTGAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAACCTCAAAAATTAATTGATCTGTGTGACACTTTTAGGTTTGAA  997

seq1  AAAAAGACTAAATGAAAAATAAAATCACTCAAGTGGTTCTCATACTTGTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACTAAATGAAAAATAAAATCACTCAAGTGGTTCTCATACTTGTA  1047

seq1  GTAAATTGAACTTATAAAGAAAACATCAGCCTTGGGTTATCTCAAATATT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTGAACTTATAAAGAAAACATCAGCCTTGGGTTATCTCAAATATT  1097

seq1  CTAATGGAGAATATGAACAGTAAGAATTC  1172
      |||||||||||||||||||||||||||||
seq2  CTAATGGAGAATATGAACAGTAAGAATTC  1126

seq1: chr13_10007424_10008495
seq2: B6Ng01-208H20.g_64_1129

seq1  GAATTCTTTTGTGACTTTTCAGAAGTCTCAGGTTTGGTGGAAGCTGATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGACTTTTCAGAAGTCTCAGGTTTGGTGGAAGCTGATGG  50

seq1  AAGGTACAGATGATGATGATGATGATGAGGAGGAGGACAATGATGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTACAGATGATGATGATGATGATGAGGAGGAGGACAATGATGATTTT  100

seq1  GAAGCATGCCAGCATCATTTATACACATCATTTTATTTACCAGAATATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATGCCAGCATCATTTATACACATCATTTTATTTACCAGAATATCT  150

seq1  ATTAGTGTTGATAGGTATTATATTTGATGAAAACTCTGCTAGCCAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTGATAGGTATTATATTTGATGAAAACTCTGCTAGCCAAATAC  200

seq1  CTTAATCTCAAAGGTAAATGCATTTTCATTTTTTCCTAAGTTCAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTCAAAGGTAAATGCATTTTCATTTTTTCCTAAGTTCAAATTTT  250

seq1  GTTCTAAATCCTGATGGTTCAAACCTCTCTTTTTTAAACATGGAGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAAATCCTGATGGTTCAAACCTCTCTTTTTTAAACATGGAGAGACT  300

seq1  AATGGCTTTCTAGACAAAGCAGTGGAGAAACTGTAGTGTAGGTGTTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTCTAGACAAAGCAGTGGAGAAACTGTAGTGTAGGTGTTGTGA  350

seq1  GCTACCTCCTCTCCTCCCCATACCTTGCCCCAAGAGAGCATAGTGAGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTCCTCTCCTCCCCATACCTTGCCCCAAGAGAGCATAGTGAGTAG  400

seq1  GGTTATTGTTCTAGTTAGGGTTTCTTTTGCTGTGATGAAACACCATGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTGTTCTAGTTAGGGTTTCTTTTGCTGTGATGAAACACCATGACT  450

seq1  AAAAGCAACTCGGGGAGGAAAGGGGTTAATTCAGTTTTCACTTCAATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAACTCGGGGAGGAAAGGGGTTAATTCAGTTTTCACTTCAATGTC  500

seq1  ATAGACCATCACTGAGGGAACTCAAGACGGGAACTTAAACGGCAGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCATCACTGAGGGAACTCAAGACGGGAACTTAAACGGCAGAAATA  550

seq1  TAGAGGCAGGAATTGATTCGGAGGCCGTAGAAGGGCACTGCTTACTGGCT  600
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCAGGAATTGATTCGGAGGCCGTAGAAGGGCACTGCTTACTGGCT  600

seq1  TGCTTGCTCAGCCTTTTCTTATTGCACCCAGGACTACCAGCCCAGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCAGCCTTTTCTTATTGCACCCAGGACTACCAGCCCAGGATGG  650

seq1  ATCTACACACAATAGGCTGTCCCCTCCCCCATCAGTCACCAATTAAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACACAATAGGCTGTCCCCTCCCCCATCAGTCACCAATTAAGAAA  700

seq1  ATGTCTTACAGGCATAGCTACAACTCAAGCTTAAGGAAGAACTTCCTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTACAGGCATAGCTACAACTCAAGCTTAAGGAAGAACTTCCTCAA  750

seq1  AGGAGGCTCCCTCTGCTCTGATAACTATAGCTTGTGTTACGTTGACAGAA  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGAGGCTCCCTCTGCTCTGATATCTATAGCTTGTGTTACGTTGACAGAA  800

seq1  AGCTAGTCAGCACAGTTGTCCTACTCTTTGTATTAAAATATGCCAAGACA  850
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  AGCTAGACAGCACAGTTGTCCTACTC-TTGTATTAAAATATGCCAAGACA  849

seq1  ACTTTATTTATATCTCACTAATAAATCCACAACAAAGAGCAGTGACCACA  900
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACTTTATTTATATCTCACTAATAAATCCAC-ACAAAGAGCACTGACCACA  898

seq1  TCACATCACCAGAATTCACTTCTTGTGTCCAGACCTGAGACACACAAGTG  950
      ||||||| ||||||||||||||||| |||| |||||||||||| | ||||
seq2  TCACATCTCCAGAATTCACTTCTTGGGTCCCGACCTGAGACAC-CCAGTG  947

seq1  CT-AAGTAACATGTTTGTTACTTTGGGATAACTTTCACAATACTTTTGTG  999
      || ||| |||||||||||||| ||||||| |||||||||||||||||| |
seq2  CTGAAGAAACATGTTTGTTACATTGGGATGACTTTCACAATACTTTTGGG  997

seq1  AG-CAATGGGGTACTTTATAATTGTATTGATGGGACAAAATACTAGAGAA  1048
      || || ||||||||||||| |||||| ||||||||| |||||||||||| 
seq2  AGCCATTGGGGTACTTTAT-ATTGTACTGATGGGAC-AAATACTAGAGA-  1044

seq1  GCCAAGTAATTATCCAAGATTCTA  1072
        | ||| ||||||| ||||||||
seq2  -GCGAGTTATTATCC-AGATTCTA  1066