BAC Information

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BAC

Clone NameB6Ng01-208I06
Chromosome13 (Build37)
Map Location 70,716,225 - 70,871,926
singlet/doubletdoublet
Overlap geneBC018507, EG620473, Adamts16
Upstream geneSrd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
Downstream gene8030423J24Rik, LOC627230, LOC100042360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208I06.bB6Ng01-208I06.g
ACCGA027377GA027378
length1,1621,149
definitionB6Ng01-208I06.b B6Ng01-208I06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,716,225 - 70,717,386)(70,870,803 - 70,871,926)
sequence
gaattccaggttggtgctggtgtgtgttcacactcatgtgcctttttagt
actttcaagatgggttttcagagtttctggtgacgtctctgctgaaaaca
gtgctcacagcttccttgccaccccatgcactttcctgtggctcacagct
tccttgccgcccgtgctcattcctgtgacttccctggtcattctctcttt
gcagctcagttctggtttccagcagtcacttcaggcattcccaatggctt
tctctgtcctcattggcattttctgggtgctttgaatctgtggattgatg
tctttcaccagttttgctctcagtgatccctcattgaacgttatccagtt
ttctcttctccttccatgttaaatgccattgtgctgtatcccagggcctt
ctgcttaagtcagtgctatctttcactaatgtctgtgtttgcttttcttg
tcctttgtttgccttcgcctttcaggactctttagcctagattggcctta
ccgtcctggcaatcctcttgcctcagcctccctagtgctgagattacaag
tgtgagacatcatgactgagtgggctgataaatgcctagggcatgaacaa
ggcttgactccactgtgtctgtgcggggttcagtaggtgcacagcatccc
atggcttttggtgcttgtactgaataaaagggggtgggccggacagctga
gaaccagagccatctctctgctttctaattcacacagatgtgaattatta
tgtgaacaagcagcctccctcatgcttcctccatgacagccaagggccac
tccaacctccctgctttccctggcatgatggactctgtcccgagatccaa
aataaacccttcctcccttaatttgttccttgtcaggatttgctcacaga
accgaaaagcaagaacacactcattagccagccctagagttcctaggcta
atctgctgagtcagttccttctgcagcccgcagactcttcacttctaacg
acacatgtccatttcatggcgcattgctgaggtctcacaatggtctggac
acgctagacattatcagtagatcatgttcatctaggtctggatatatgta
ggaacgtttaacaaacaattcactcatggccacagagactggcttcgggc
ctaggccactgt

gaattctctaaaccagagtttctgaatcactggtgacagtgccaagcctg
aaacagagagggggtggggcgactgggaggtgaaggtgcgaacttggcat
tgctgagggcctgggttctcactgctgctgcactgccaggctgaggacca
cacgctaatcagatcagtggcttcaccaggaaccctgaggccagaggctg
agtctctgtgtccatcaatgagtgctgaattctgagagcccagcctgata
caggagtgagggtgattaatagttgttaattagaggaatcaattgatggg
aaaacacatcaaaccaaacataactgttttaaatccgctaagtgtatcca
atctgtggccctcaacctgcagaggagagttgagaatgcctcccaactta
gaatcataacataatgtaaaacaataggagatattttattcactttgcat
cctgatcaatgccccccttcctggttctcccttcccacagttcctccccc
attccctctccttctcctcagagagtggcgcccccacagtatgcccccaa
ccctggcataggctttattttggtagctcagtgattactcggttttcaag
agttggtcttagagaagatgctatgaagctgtgttacgaggttggtcaca
tttcactgtcacactgagtagaatcttcagctgaacaggaataggttcag
tttgaagaactcggggcaggtagatagaaataactgcagatgtccctggt
gagaccaggcccattgctgtttcagtcctgtttgcccatgtcccaagagc
tctcaatgtcccatgagctgagctgggggcctgacatgcacagagtaaag
aacaaagggcctgaaggagctttttacagcatgtttggaattgtgacaca
gagtgggggaaccctgctgaccccacctgacccctggaggtactcagaaa
caaaacttgcagcctgccctaaagcaatgtttgttctggtttgccattag
ttacaagttggaaacttgaaccattgggtttacttgttacttgattcttt
gaagttaagagtcttagcctcttaggtaattatttccatcataggcttca
gggcctgaccagtgcaattagtccaaagaagaatgaatgacacaaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_70716225_70717386
seq2: B6Ng01-208I06.b_44_1205

seq1  GAATTCCAGGTTGGTGCTGGTGTGTGTTCACACTCATGTGCCTTTTTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTGGTGCTGGTGTGTGTTCACACTCATGTGCCTTTTTAGT  50

seq1  ACTTTCAAGATGGGTTTTCAGAGTTTCTGGTGACGTCTCTGCTGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAAGATGGGTTTTCAGAGTTTCTGGTGACGTCTCTGCTGAAAACA  100

seq1  GTGCTCACAGCTTCCTTGCCACCCCATGCACTTTCCTGTGGCTCACAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCACAGCTTCCTTGCCACCCCATGCACTTTCCTGTGGCTCACAGCT  150

seq1  TCCTTGCCGCCCGTGCTCATTCCTGTGACTTCCCTGGTCATTCTCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCCGCCCGTGCTCATTCCTGTGACTTCCCTGGTCATTCTCTCTTT  200

seq1  GCAGCTCAGTTCTGGTTTCCAGCAGTCACTTCAGGCATTCCCAATGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCAGTTCTGGTTTCCAGCAGTCACTTCAGGCATTCCCAATGGCTT  250

seq1  TCTCTGTCCTCATTGGCATTTTCTGGGTGCTTTGAATCTGTGGATTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCTCATTGGCATTTTCTGGGTGCTTTGAATCTGTGGATTGATG  300

seq1  TCTTTCACCAGTTTTGCTCTCAGTGATCCCTCATTGAACGTTATCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCAGTTTTGCTCTCAGTGATCCCTCATTGAACGTTATCCAGTT  350

seq1  TTCTCTTCTCCTTCCATGTTAAATGCCATTGTGCTGTATCCCAGGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTCCTTCCATGTTAAATGCCATTGTGCTGTATCCCAGGGCCTT  400

seq1  CTGCTTAAGTCAGTGCTATCTTTCACTAATGTCTGTGTTTGCTTTTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTAAGTCAGTGCTATCTTTCACTAATGTCTGTGTTTGCTTTTCTTG  450

seq1  TCCTTTGTTTGCCTTCGCCTTTCAGGACTCTTTAGCCTAGATTGGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTTGCCTTCGCCTTTCAGGACTCTTTAGCCTAGATTGGCCTTA  500

seq1  CCGTCCTGGCAATCCTCTTGCCTCAGCCTCCCTAGTGCTGAGATTACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCCTGGCAATCCTCTTGCCTCAGCCTCCCTAGTGCTGAGATTACAAG  550

seq1  TGTGAGACATCATGACTGAGTGGGCTGATAAATGCCTAGGGCATGAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACATCATGACTGAGTGGGCTGATAAATGCCTAGGGCATGAACAA  600

seq1  GGCTTGACTCCACTGTGTCTGTGCGGGGTTCAGTAGGTGCACAGCATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGACTCCACTGTGTCTGTGCGGGGTTCAGTAGGTGCACAGCATCCC  650

seq1  ATGGCTTTTGGTGCTTGTACTGAATAAAAGGGGGTGGGCCGGACAGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTTGGTGCTTGTACTGAATAAAAGGGGGTGGGCCGGACAGCTGA  700

seq1  GAACCAGAGCCATCTCTCTGCTTTCTAATTCACACAGATGTGAATTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGAGCCATCTCTCTGCTTTCTAATTCACACAGATGTGAATTATTA  750

seq1  TGTGAACAAGCAGCCTCCCTCATGCTTCCTCCATGACAGCCAAGGGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACAAGCAGCCTCCCTCATGCTTCCTCCATGACAGCCAAGGGCCAC  800

seq1  TCCAACCTCCCTGCTTTCCCTGGCATGATGGACTCTGTCCCGAGATCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTCCCTGCTTTCCCTGGCATGATGGACTCTGTCCCGAGATCCAA  850

seq1  AATAAACCCTTCCTCCCTTAATTTGTTCCTTGTCAGGGATTTGCTCACAG  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATAAACCCTTCCTCCCTTAATTTGTTCCTTGTCA-GGATTTGCTCACAG  899

seq1  AACCGAAAAGCAGGAACACACTCATTAGCCAGCCCTAGAGTTCCTAGGCT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACCGAAAAGCAAGAACACACTCATTAGCCAGCCCTAGAGTTCCTAGGCT  949

seq1  AATCTGCTGAGTCAGTTCCTTCTGCAGCCCGCAGACTCTTCACTTCTAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTGAGTCAGTTCCTTCTGCAGCCCGCAGACTCTTCACTTCTAAC  999

seq1  GACACATGTCCCATTTCATGGCGCATTGCTGAGGTCTCAC-ATGTCCTTG  1049
      ||||||||| |||||||||||||||||||||||||||||| |||  | ||
seq2  GACACATGT-CCATTTCATGGCGCATTGCTGAGGTCTCACAATGGTC-TG  1047

seq1  GACACGCTAGACATTATTCAGTAGATCATG-TCATCTAGTCCTGGATAT-  1097
      |||||||||||||||| ||||||||||||| ||||||||  |||||||| 
seq2  GACACGCTAGACATTA-TCAGTAGATCATGTTCATCTAGGTCTGGATATA  1096

seq1  TGTAGGAACATTTACCAAACAATTCCAACTCATGGGCCACAGAGACT-GC  1146
      ||||||||| |||| ||||||||||  |||||| ||||||||||||| ||
seq2  TGTAGGAACGTTTAACAAACAATTC--ACTCAT-GGCCACAGAGACTGGC  1143

seq1  TTCGG--CTA-GCCACTGT  1162
      |||||  ||| ||||||||
seq2  TTCGGGCCTAGGCCACTGT  1162


seq1: chr13_70870803_70871926
seq2: B6Ng01-208I06.g_65_1213 (reverse)

seq1  GCATTT-TGTCATTTCATTC-TCTTT-GACTAA-TGCACT-GTCAGGCCC  45
      |||||| ||||| ||||||| ||||| |||||| |||||| |||||||||
seq2  GCATTTGTGTCA-TTCATTCTTCTTTGGACTAATTGCACTGGTCAGGCCC  49

seq1  TGAAGCCTATGATTGGAAT-ATTTCCT-AGA-GCT-AGACTCCTTTACTT  91
      ||||||||||||| | ||| ||| ||| ||| ||| ||||| ||| ||||
seq2  TGAAGCCTATGATGGAAATAATTACCTAAGAGGCTAAGACT-CTTAACTT  98

seq1  CAA--GATC-AGTGAC-AGTAA--CCCATGGTTC-AGTTTCC-ACTTGTA  133
      |||   ||| ||| || |||||  || ||||||| ||||||| |||||||
seq2  CAAAGAATCAAGTAACAAGTAAACCCAATGGTTCAAGTTTCCAACTTGTA  148

seq1  ACT-ATGGC-AACCAGAACAAACAATGCTTT-GGGCA-GCTGCAAGTTTT  179
      ||| ||||| |||||||||||||| |||||| ||||| ||||||||||||
seq2  ACTAATGGCAAACCAGAACAAACATTGCTTTAGGGCAGGCTGCAAGTTTT  198

seq1  GTTTCTGAGTACCTCCA-GGGTCAGGT-GGGTCAGCAGG--TTCCCCACT  225
      ||||||||||||||||| ||||||||| |||||||||||  | |||||||
seq2  GTTTCTGAGTACCTCCAGGGGTCAGGTGGGGTCAGCAGGGTTCCCCCACT  248

seq1  CTGTGTCACATTTCC-AACATGCTGT-AAAAGCTCCTTTCAGCCCTTTGT  273
      |||||||||| |||| |||||||||| |||||||||||   |||||||||
seq2  CTGTGTCACAATTCCAAACATGCTGTAAAAAGCTCCTTCAGGCCCTTTGT  298

seq1  TCTTTACTCTGTGCATGTCAGGCCCCCAGCTCAGCTCATGGGACATTGAG  323
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTCTGTGCATGTCAGGCCCCCAGCTCAGCTCATGGGACATTGAG  348

seq1  AGCTCTTGGGACATGGGCAAACAGGACTGAAACAGCAATGGGCCTGGTCT  373
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGGGACATGGGCAAACAGGACTGAAACAGCAATGGGCCTGGTCT  398

seq1  CACCAGGGACATCTGCAGTTATTTCTATCTACCTGCCCCGAGTTCTTCAA  423
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGACATCTGCAGTTATTTCTATCTACCTGCCCCGAGTTCTTCAA  448

seq1  ACTGAACCTATTCCTGTTCAGCTGAAGATTCTACTCAGTGTGACAGTGAA  473
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTATTCCTGTTCAGCTGAAGATTCTACTCAGTGTGACAGTGAA  498

seq1  ATGTGACCAACCTCGTAACACAGCTTCATAGCATCTTCTCTAAGACCAAC  523
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCAACCTCGTAACACAGCTTCATAGCATCTTCTCTAAGACCAAC  548

seq1  TCTTGAAAACCGAGTAATCACTGAGCTACCAAAATAAAGCCTATGCCAGG  573
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAACCGAGTAATCACTGAGCTACCAAAATAAAGCCTATGCCAGG  598

seq1  GTTGGGGGCATACTGTGGGGGCGCCACTCTCTGAGGAGAAGGAGAGGGAA  623
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGCATACTGTGGGGGCGCCACTCTCTGAGGAGAAGGAGAGGGAA  648

seq1  TGGGGGAGGAACTGTGGGAAGGGAGAACCAGGAAGGGGGGCATTGATCAG  673
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGAACTGTGGGAAGGGAGAACCAGGAAGGGGGGCATTGATCAG  698

seq1  GATGCAAAGTGAATAAAATATCTCCTATTGTTTTACATTATGTTATGATT  723
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGTGAATAAAATATCTCCTATTGTTTTACATTATGTTATGATT  748

seq1  CTAAGTTGGGAGGCATTCTCAACTCTCCTCTGCAGGTTGAGGGCCACAGA  773
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTTGGGAGGCATTCTCAACTCTCCTCTGCAGGTTGAGGGCCACAGA  798

seq1  TTGGATACACTTAGCGGATTTAAAACAGTTATGTTTGGTTTGATGTGTTT  823
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACACTTAGCGGATTTAAAACAGTTATGTTTGGTTTGATGTGTTT  848

seq1  TCCCATCAATTGATTCCTCTAATTAACAACTATTAATCACCCTCACTCCT  873
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCAATTGATTCCTCTAATTAACAACTATTAATCACCCTCACTCCT  898

seq1  GTATCAGGCTGGGCTCTCAGAATTCAGCACTCATTGATGGACACAGAGAC  923
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGGCTGGGCTCTCAGAATTCAGCACTCATTGATGGACACAGAGAC  948

seq1  TCAGCCTCTGGCCTCAGGGTTCCTGGTGAAGCCACTGATCTGATTAGCGT  973
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCTGGCCTCAGGGTTCCTGGTGAAGCCACTGATCTGATTAGCGT  998

seq1  GTGGTCCTCAGCCTGGCAGTGCAGCAGCAGTGAGAACCCAGGCCCTCAGC  1023
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTCAGCCTGGCAGTGCAGCAGCAGTGAGAACCCAGGCCCTCAGC  1048

seq1  AATGCCAAGTTCGCACCTTCACCTCCCAGTCGCCCCACCCCCTCTCTGTT  1073
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAAGTTCGCACCTTCACCTCCCAGTCGCCCCACCCCCTCTCTGTT  1098

seq1  TCAGGCTTGGCACTGTCACCAGTGATTCAGAAACTCTGGTTTAGAGAATT  1123
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTTGGCACTGTCACCAGTGATTCAGAAACTCTGGTTTAGAGAATT  1148

seq1  C  1124
      |
seq2  C  1149


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