BAC Information

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BAC

Clone NameB6Ng01-208I24
Chromosome13 (Build37)
Map Location 110,005,674 - 110,198,481
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream geneLOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208I24.bB6Ng01-208I24.g
ACCGA027410GA027411
length1,106683
definitionB6Ng01-208I24.b B6Ng01-208I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,005,674 - 110,006,789)(110,197,790 - 110,198,481)
sequence
gaattcagaaaggaagccatgcgttcagcatttttaacatgtcctcatcg
gcgacgggatgtcattcacacctctgtaaaatctaacctctttttttcca
ctttcaccaccaactggtgactattccacactattcagttgatacgcgaa
atcagtattaaaattttggcaaggagctggagagggtggctcaaagttta
agatcactttaatgctttcccagagaatccaggtttggtgggtatccctg
taaggtagcacacagctgcctgtaactccaggaaggtcggtcccctatgc
cttctgcctccacacacacgagttgtctagatacaccggcaaggacacac
aaattaaaaataaaacacgtcctgagaagttggccgaggaatttacgagt
ataaggcaggtgctgcttaatgaatcaatgccatgaatcatctgagactc
tcgtgacgttttcgatttaccaacccaacccaagagcctttggcttagga
ttagggtagaccttggatctggggctgttgggaaatttgtgagggtctga
agcatgatcatactggagggctaaatatcatattctgtatatcgtaaagt
tcccagttacactcacaagtttgcctaattaaggaagtgtgtaccttggg
cctccttctatgacagaagcgtgcgcagttactcgaaaggtcatcatcac
agctagttgagagttctttccctgtgtttactagttctccgaaagcgtca
tacagcgcgttatgatcaccccttctccagtccttccccagctcacagac
tgcttccctaccctcgcaacttggtgcggttttctaaaagtctttcaaaa
gcaattttgctgcccaaatactcctggatgtgtggttctacgctggcatg
ggatgacttaccaggaacacactcttacagaaactaacactctctctctc
tctctctctctctctctctctctctctctcgttcccaggactaaaaactg
ccagcagttgtatgacttttgtgactgtgtgacaatctctgttcctgcag
ggattgctcaagctcgactacaagagaatttgttcatggttgcggcctac
atatgc

gaattcaaaagaattaccatatttcttgttcatggaagtgtgaagaagtg
tgacatcattcattaagagggaaaaaaagggaggtagaatactgttgaaa
gcaatagcaaggtgctggagactgggaaacagccctagatgactgagtat
ggaaattctctctctctctccctctctctctctctctctctctctctctc
tttctctctctctctctcaatctctctctctcaatttctctctcaacctc
tctctctctctcaacctctctctctcaatctctctctctctcaatctctc
tctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtataaggcaagcctggagttcacgtgat
ggagattaaacattggtggccattgcactggcaaaggcatagacgatgat
taagaaccagttaagaggtaaagtgcttgcctagcacatgctaagctcac
actttcatccacagcactgcagctatgagacatggattctcaggtctgtc
cttcacagctcctggcaggccttctgatgagcataaggcctgacctcact
cctagttattcagactcagaagatctagcacgggagagacagctacattt
ttccaggcttgtggagactttcatgtatgccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110005674_110006789
seq2: B6Ng01-208I24.b_46_1151

seq1  GAATTCAGAAAGGAAGCCATGCGTTCAGCATTTTTAACATGTCCTCATCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGAAGCCATGCGTTCAGCATTTTTAACATGTCCTCATCG  50

seq1  GCGACGGGATGTCATTCACACCTCTGTAAAATCTAACCTCTTTTTTTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACGGGATGTCATTCACACCTCTGTAAAATCTAACCTCTTTTTTTCCA  100

seq1  CTTTCACCACCAACTGGTGACTATTCCACACTATTCAGTTGATACGCGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCACCAACTGGTGACTATTCCACACTATTCAGTTGATACGCGAA  150

seq1  ATCAGTATTAAAATTTTGGCAAGGAGCTGGAGAGGGTGGCTCAAAGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATTAAAATTTTGGCAAGGAGCTGGAGAGGGTGGCTCAAAGTTTA  200

seq1  AGATCACTTTAATGCTTTCCCAGAGAATCCAGGTTTGGTGGGTATCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTTTAATGCTTTCCCAGAGAATCCAGGTTTGGTGGGTATCCCTG  250

seq1  TAAGGTAGCACACAGCTGCCTGTAACTCCAGGAAGGTCGGTCCCCTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGCACACAGCTGCCTGTAACTCCAGGAAGGTCGGTCCCCTATGC  300

seq1  CTTCTGCCTCCACACACACGAGTTGTCTAGATACACCGGCAAGGACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCTCCACACACACGAGTTGTCTAGATACACCGGCAAGGACACAC  350

seq1  AAATTAAAAATAAAACACGTCCTGAGAAGTTGGCCGAGGAATTTACGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAATAAAACACGTCCTGAGAAGTTGGCCGAGGAATTTACGAGT  400

seq1  ATAAGGCAGGTGCTGCTTAATGAATCAATGCCATGAATCATCTGAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAGGTGCTGCTTAATGAATCAATGCCATGAATCATCTGAGACTC  450

seq1  TCGTGACGTTTTCGATTTACCAACCCAACCCAAGAGCCTTTGGCTTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACGTTTTCGATTTACCAACCCAACCCAAGAGCCTTTGGCTTAGGA  500

seq1  TTAGGGTAGACCTTGGATCTGGGGCTGTTGGGAAATTTGTGAGGGTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTAGACCTTGGATCTGGGGCTGTTGGGAAATTTGTGAGGGTCTGA  550

seq1  AGCATGATCATACTGGAGGGCTAAATATCATATTCTGTATATCGTAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATCATACTGGAGGGCTAAATATCATATTCTGTATATCGTAAAGT  600

seq1  TCCCAGTTACACTCACAAGTTTGCCTAATTAAGGAAGTGTGTACCTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTTACACTCACAAGTTTGCCTAATTAAGGAAGTGTGTACCTTGGG  650

seq1  CCTCCTTCTATGACAGAAGCGTGCGCAGTTACTCGAAAGGTCATCATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTATGACAGAAGCGTGCGCAGTTACTCGAAAGGTCATCATCAC  700

seq1  AGCTAGTTGAGAGTTCTTTCCCTGTGTTTACTAGTTCTCCGAAAGCGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTTGAGAGTTCTTTCCCTGTGTTTACTAGTTCTCCGAAAGCGTCA  750

seq1  TACAGCGCGTTATGATCACCCCTTCTCCAGTCCTTCCCCAGCTCACAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCGCGTTATGATCACCCCTTCTCCAGTCCTTCCCCAGCTCACAGAC  800

seq1  TGCTTCCCTACCCTCGCAACTTGGTGCGGTTTTCTAAAAGTCTTTCAAAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCTTCCCTACCCTCGCAACTTGGTGCGGTTTTCTAAAAGTCTTTC-AAA  849

seq1  AGCAATTTTGCTGCCCAAATACTCCTGGATGTGTGGTTCTACGCTGGCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTGCTGCCCAAATACTCCTGGATGTGTGGTTCTACGCTGGCAT  899

seq1  GGGATGACTTACCAGGAACAACACTCTTACAGAAAACTAACACTCTCTCT  950
      ||||||||||||||||||| |||||||||||| |||||||||||||||||
seq2  GGGATGACTTACCAGGAAC-ACACTCTTACAG-AAACTAACACTCTCTCT  947

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCAGGAACTAAAA  1000
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCCCAGG-ACTAAAA  996

seq1  ACTGCCAGCAGTTGTATGACTTTTGGTGACTGTGTGACCATCTCCTGTTT  1050
      |||||||||||||||||||||||| ||||||||||||| |||| ||||| 
seq2  ACTGCCAGCAGTTGTATGACTTTT-GTGACTGTGTGACAATCT-CTGTT-  1043

seq1  CCCTGCTGGGATTTGGTCTAGCTCGGTCTCACAGAGATTTTGTTCAT-GT  1099
       ||||| |||| ||| || ||||| | ||   ||||| ||||||||| ||
seq2  -CCTGCAGGGA-TTGCTCAAGCTC-GACTACAAGAGAATTTGTTCATGGT  1090

seq1  TGCGGCCTTACATATGC  1116
      ||||||| |||||||||
seq2  TGCGGCC-TACATATGC  1106


seq1: chr13_110197790_110198481
seq2: B6Ng01-208I24.g_70_752 (reverse)

seq1  GTGGCCATACATGAAAGTCACCCACAAAGCCTGGAAAAAATGTAGCTGTC  50
      |||| ||||||||||||||  |||| |||||||| |||||||||||||| 
seq2  GTGG-CATACATGAAAGTC-TCCAC-AAGCCTGG-AAAAATGTAGCTGT-  45

seq1  CTCTCCCTGTGCTAGATCCTCTGAGTCTGAATGACTAGGGAGTGAGGCCA  100
      ||||||| |||||||||| ||||||||||||| |||| ||||||||| ||
seq2  CTCTCCC-GTGCTAGATCTTCTGAGTCTGAATAACTA-GGAGTGAGGTCA  93

seq1  GGCCCTTCTGCTCTTCAGAAGGCCTGCCAGGAGCTGTGATGGACAGCCCT  150
      || |||| ||||| ||||||||||||||||||||||||| |||||| |||
seq2  GG-CCTTATGCTCATCAGAAGGCCTGCCAGGAGCTGTGAAGGACAGACCT  142

seq1  GAGAATCCATGTCTCATAGCTTGCAGTGCTGTGGATGAAAGTGTGAGCTT  200
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGAATCCATGTCTCATAGC-TGCAGTGCTGTGGATGAAAGTGTGAGCTT  191

seq1  AGCATGTGCTAGGCAAGCACTTTACCTCTTAACTGGTTCTTAATCATCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCTAGGCAAGCACTTTACCTCTTAACTGGTTCTTAATCATCGT  241

seq1  CTATGCCTTTGCCAGTGCAATGGCCACCAATGTTTAATCTCCATCACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTATGCCTTTGCCAGTGCAATGGCCACCAATGTTTAATCTCCATCACGTG  291

seq1  AACTCCAGGCTTGCATTATACACACACACACACACACACACACACACACA  350
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACTCCAGGCTTGCCTTATACACACACACACACACACACACACACACACA  341

seq1  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATT  391

seq1  GAGAGAGAGAGAGATTGAGAGAGAGAGGTTGAGAGAGAGAGAGAGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGATTGAGAGAGAGAGGTTGAGAGAGAGAGAGAGGTTGA  441

seq1  GAGAGAAATTGAGAGAGAGAGATTGAGAGAGAGAGAGAGAAAGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATTGAGAGAGAGAGATTGAGAGAGAGAGAGAGAAAGAGAGAGA  491

seq1  GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAATTTCCATACTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAATTTCCATACTCAG  541

seq1  TCATCTAGGGCTGTTTCCCAGTCTCCAGCACCTTGCTATTGCTTTCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAGGGCTGTTTCCCAGTCTCCAGCACCTTGCTATTGCTTTCAACA  591

seq1  GTATTCTACCTCCCTTTTTTTCCCTCTTAATGAATGATGTCACACTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTACCTCCCTTTTTTTCCCTCTTAATGAATGATGTCACACTTCTT  641

seq1  CACACTTCCATGAACAAGAAATATGGTAATTCTTTTGAATTC  692
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTCCATGAACAAGAAATATGGTAATTCTTTTGAATTC  683


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