BAC Information

Click to search

BAC

Clone NameB6Ng01-208M17
Chromosome13 (Build37)
Map Location 84,612,981 - 84,735,890
singlet/doubletdoublet
Overlap genenone
Upstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081, LOC667101, Tmem161b, LOC666795, LOC667111
Downstream geneLOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M17.bB6Ng01-208M17.g
ACCGA027579GA027580
length1,1391,129
definitionB6Ng01-208M17.b B6Ng01-208M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,612,981 - 84,613,821)(84,734,750 - 84,735,890)
sequence
gaattctccactaaacccatcttgtcttgggctttttttggttgggagac
tattaatgactatttctatttcttcatgggatatgagactgtttagatgg
tttatatcatcctgttttaactttggcaccttgtatgtgtctagaaaatt
gtccatttcctcctgtttttccaatttagttgagtataaacttttgtagt
aggacctgatgatgtttttgaatttccatgatttccattgttatgtctct
cttttcatttctgattttatttgtttggatgctgtctctgtgccctctga
tttgtctgactaagggtttatctacctttgtgagtttctcaaagaaccag
ctccttgttttgttgattatttatatagttctttttatttctatttggtt
gatttcagcactgagtttgattccgtctacttgtcttgggtgtatttgct
tcttttggtctgcaggtttcagatgtgttgtcaagctgctagtgtaagct
ctctacagtttctttttggaggcactcagcactgtgagttttcctcttag
cactgctttctttgtgtcccataagtttgggtataatgcaaggtctctcc
agtttctttttggaggcacttagaagtaaaagttttcctcttaccactga
tttcattgtatctgataagttttggtatcatgtaccctcattttcattag
tttttaaaaggactttaatttctttatttcttccttgaccaagttatcat
tgagaaggtcactgttcagcttccttgtatatgtgtgctttccatggtgg
tggtggtagcaatagcaggaccagaagcagcagtggtagcagaggctgtg
gtgcactcctttaattccagcacccaggaggtggatctctgtgagctgaa
ggatagtctagtttacagattcccagggcacccagtgctacacatagaaa
ttgtgtctataattaattaattaattaatttatttggtggtgtggatacc
aatttagctgcagagtgttttcctgacattgaatccacagattctaatcc
cagatcaaatagatgaacattggctcctttatgatggagggccttcatga
agaatagttcagaatttccacttgtaagcctctttgcca

gaattcttaatggtggcataaaaattttacatgtgtgaatgatattttaa
tatttcatttttatgctcctctcattgaccacttttatactataagccat
ggttataattaacatttatattaaaatgtaatgagaagtactaaatattg
tatttgaatagattattaaaacaaggttagaaattttttccatagctatg
gacacaattaaattttgatttagtgtaagcattaggaaaataataaatat
gaacttcaaattttcattatacatactatgtttatttacaaatattttct
aaattcttcagttcatatgtatattagtaaatgtatgtctagaccttttc
tagcaacaatgaaaatcatctccaattactttcacttctcagatgaccag
ttgtgtggtctccatacttgaagattcttggttggttttcctctctgtgc
tttgtaattccatatgacttctattctttcttcactgggttactcctttt
tttggtatacatacaatatgtattttctaccttaaatttaatgagcatgc
tggagtcatgcagttgcttaaagtagatttcacatcaacattagtgtata
aaggctcttttatattgacattagatacaatgtctatttgaaatttatgt
attctacctatagaaaaatattaataagcttaatatcaaagaaatggctt
taaatctatccctaattgtttatttgcttctttgtgaagaaatgtagggt
atatgtgaaatgatttttagcttttttcacaaatagattggaatttaaaa
aaatagatcagtccacacaaggaacctgctgaaaattctactgtccagaa
atgagtacgtctgtttctcttctttgcctgatatagctaaagtaatgttt
gcaagcatttactcctcctctaaagagtttctttcatattgtgtaggaac
attttttatagacatagatatttcattcatgactttggatttgcagacat
ctaggaaatgtagctcgaattcagagagcatcactagcatggtggtgcat
gccatagagcatgatcagagagagactctgatgtgaggcagcctagcctc
agaagaaactcttgccccaagggagagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_84612981_84613821
seq2: B6Ng01-208M17.b_346_1186

seq1  GATTTGTCTGACTAAGGGTTTATCTACCTTTGTGAGTTTCTCAAAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTCTGACTAAGGGTTTATCTACCTTTGTGAGTTTCTCAAAGAACC  50

seq1  AGCTCCTTGTTTTGTTGATTATTTATATAGTTCTTTTTATTTCTATTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTGTTTTGTTGATTATTTATATAGTTCTTTTTATTTCTATTTGG  100

seq1  TTGATTTCAGCACTGAGTTTGATTCCGTCTACTTGTCTTGGGTGTATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCAGCACTGAGTTTGATTCCGTCTACTTGTCTTGGGTGTATTTG  150

seq1  CTTCTTTTGGTCTGCAGGTTTCAGATGTGTTGTCAAGCTGCTAGTGTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGGTCTGCAGGTTTCAGATGTGTTGTCAAGCTGCTAGTGTAAG  200

seq1  CTCTCTACAGTTTCTTTTTGGAGGCACTCAGCACTGTGAGTTTTCCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACAGTTTCTTTTTGGAGGCACTCAGCACTGTGAGTTTTCCTCTT  250

seq1  AGCACTGCTTTCTTTGTGTCCCATAAGTTTGGGTATAATGCAAGGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGCTTTCTTTGTGTCCCATAAGTTTGGGTATAATGCAAGGTCTCT  300

seq1  CCAGTTTCTTTTTGGAGGCACTTAGAAGTAAAAGTTTTCCTCTTACCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTTTTTGGAGGCACTTAGAAGTAAAAGTTTTCCTCTTACCACT  350

seq1  GATTTCATTGTATCTGATAAGTTTTGGTATCATGTACCCTCATTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTGTATCTGATAAGTTTTGGTATCATGTACCCTCATTTTCATT  400

seq1  AGTTTTTAAAAGGACTTTAATTTCTTTATTTCTTCCTTGACCAAGTTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTAAAAGGACTTTAATTTCTTTATTTCTTCCTTGACCAAGTTATC  450

seq1  ATTGAGAAGGTCACTGTTCAGCTTCCTTGTATATGTGTGCTTTCCATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAGGTCACTGTTCAGCTTCCTTGTATATGTGTGCTTTCCATGGT  500

seq1  GGTGGTGGTAGCAATAGCAGGACCAGAAGCAGCAGTGGTAGCAGAGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTAGCAATAGCAGGACCAGAAGCAGCAGTGGTAGCAGAGGCTG  550

seq1  TGGTGCACTCCTTTAATTCCAGCACCCAGGAGGTGGATCTCTGTGAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCACTCCTTTAATTCCAGCACCCAGGAGGTGGATCTCTGTGAGCTG  600

seq1  AAGGATAGTCTAGTTTACAGATTCCCAGGGCACCCAGTGCTACACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAGTCTAGTTTACAGATTCCCAGGGCACCCAGTGCTACACATAGA  650

seq1  AATTGTGTCTATAATTAATTAATTAATTAA-TTAATTGGT-GTGTGGATA  698
      |||||||||||||||||||||||||||||| ||| ||||| |||||||||
seq2  AATTGTGTCTATAATTAATTAATTAATTAATTTATTTGGTGGTGTGGATA  700

seq1  CC-ATTTAGCTGCAGAGTGTTTTCCTGACATTTGAATCCACAGATTCT-A  746
      || ||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  CCAATTTAGCTGCAGAGTGTTTTCCTGACA-TTGAATCCACAGATTCTAA  749

seq1  TCCCAGAACCAAAATAAAATGAAACATTGGCTC--TTATGAATGAGGG-C  793
      ||||||| |  |||| | ||| |||||||||||  ||||||  ||||| |
seq2  TCCCAGATC--AAAT-AGATG-AACATTGGCTCCTTTATGATGGAGGGCC  795

seq1  TTCATGAAGATTAAGTCAAGAATTTCCACTTGTTAGCCTCCTTTGCCA  841
      |||||||||| | |||  ||||||||||||||| ||||| ||||||||
seq2  TTCATGAAGAAT-AGTTCAGAATTTCCACTTGTAAGCCT-CTTTGCCA  841


seq1: chr13_84734750_84735890
seq2: B6Ng01-208M17.g_65_1193 (reverse)

seq1  ATCTCTCCCTTTTGGGGGCAGAGTTTC-TCTGAAGCCTAGGCTGGCCTCA  49
      |||||||||  ||||||  |||||||| |||| || ||||||| ||||||
seq2  ATCTCTCCC--TTGGGGCAAGAGTTTCTTCTG-AGGCTAGGCT-GCCTCA  46

seq1  CATCAGAGTTCTTCCTC-CTCTGATCATGCTCTTATTGGCATGCACCACC  98
      |||||||||     ||| |||||||||||||||   ||||||||||||||
seq2  CATCAGAGT-----CTCTCTCTGATCATGCTCT--ATGGCATGCACCACC  89

seq1  ATGGCTAGTGATGCTCTTCTGAATTCGGAGCTAACATTTCCTAGATGTCT  148
      || ||||||||||||| ||||||||| ||||| |||||||||||||||||
seq2  AT-GCTAGTGATGCTC-TCTGAATTC-GAGCT-ACATTTCCTAGATGTCT  135

seq1  GCAAATCCCAAGTCATGAATGAAATATCTATGTCTAT-AAAAATGTTCCT  197
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  GCAAATCCAAAGTCATGAATGAAATATCTATGTCTATAAAAAATGTTCCT  185

seq1  ACACAATATGAAAGAAACTCTTTAGAGGAGGAGTAAATGCTTGCAAACAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATATGAAAGAAACTCTTTAGAGGAGGAGTAAATGCTTGCAAACAT  235

seq1  TACTTTAGCTATATCAGGCAAAGAAGAGAAACAGACGTACTCATTTCTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAGCTATATCAGGCAAAGAAGAGAAACAGACGTACTCATTTCTGG  285

seq1  ACAGTAGAATTTTCAGCAGGTTCCTTGTGTGGACTGATCTATTTTTTTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGAATTTTCAGCAGGTTCCTTGTGTGGACTGATCTATTTTTTTAA  335

seq1  ATTCCAATCTATTTGTGAAAAAAGCTAAAAATCATTTCACATATACCCTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATCTATTTGTGAAAAAAGCTAAAAATCATTTCACATATACCCTA  385

seq1  CATTTCTTCACAAAGAAGCAAATAAACAATTAGGGATAGATTTAAAGCCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTCACAAAGAAGCAAATAAACAATTAGGGATAGATTTAAAGCCA  435

seq1  TTTCTTTGATATTAAGCTTATTAATATTTTTCTATAGGTAGAATACATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATATTAAGCTTATTAATATTTTTCTATAGGTAGAATACATAA  485

seq1  ATTTCAAATAGACATTGTATCTAATGTCAATATAAAAGAGCCTTTATACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATAGACATTGTATCTAATGTCAATATAAAAGAGCCTTTATACA  535

seq1  CTAATGTTGATGTGAAATCTACTTTAAGCAACTGCATGACTCCAGCATGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTGATGTGAAATCTACTTTAAGCAACTGCATGACTCCAGCATGC  585

seq1  TCATTAAATTTAAGGTAGAAAATACATATTGTATGTATACCAAAAAAAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATTTAAGGTAGAAAATACATATTGTATGTATACCAAAAAAAGG  635

seq1  AGTAACCCAGTGAAGAAAGAATAGAAGTCATATGGAATTACAAAGCACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACCCAGTGAAGAAAGAATAGAAGTCATATGGAATTACAAAGCACAG  685

seq1  AGAGGAAAACCAACCAAGAATCTTCAAGTATGGAGACCACACAACTGGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAACCAACCAAGAATCTTCAAGTATGGAGACCACACAACTGGTC  735

seq1  ATCTGAGAAGTGAAAGTAATTGGAGATGATTTTCATTGTTGCTAGAAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAAGTGAAAGTAATTGGAGATGATTTTCATTGTTGCTAGAAAAG  785

seq1  GTCTAGACATACATTTACTAATATACATATGAACTGAAGAATTTAGAAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGACATACATTTACTAATATACATATGAACTGAAGAATTTAGAAAA  835

seq1  TATTTGTAAATAAACATAGTATGTATAATGAAAATTTGAAGTTCATATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAAATAAACATAGTATGTATAATGAAAATTTGAAGTTCATATTT  885

seq1  ATTATTTTCCTAATGCTTACACTAAATCAAAATTTAATTGTGTCCATAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTCCTAATGCTTACACTAAATCAAAATTTAATTGTGTCCATAGC  935

seq1  TATGGAAAAAATTTCTAACCTTGTTTTAATAATCTATTCAAATACAATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAAAAATTTCTAACCTTGTTTTAATAATCTATTCAAATACAATAT  985

seq1  TTAGTACTTCTCATTACATTTTAATATAAATGTTAATTATAACCATGGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACTTCTCATTACATTTTAATATAAATGTTAATTATAACCATGGCT  1035

seq1  TATAGTATAAAAGTGGTCAATGAGAGGAGCATAAAAATGAAATATTAAAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATAAAAGTGGTCAATGAGAGGAGCATAAAAATGAAATATTAAAA  1085

seq1  TATCATTCACACATGTAAAATTTTTATGCCACCATTAAGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCACACATGTAAAATTTTTATGCCACCATTAAGAATTC  1129


| Home | SequenceCutter | Blast | Download |