BAC Information

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BAC

Clone NameB6Ng01-209G11
Chromosome13 (Build37)
Map Location 67,418,492 - 67,591,850
singlet/doubletdoublet
Overlap geneA230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817
Upstream geneLOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457
Downstream geneZfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209G11.bB6Ng01-209G11.g
ACCGA028030GA028031
length8991,134
definitionB6Ng01-209G11.b B6Ng01-209G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,590,955 - 67,591,850)(67,418,492 - 67,419,113)
sequence
gaattcactcttaatagaaaatttgacaagtgatatgtgataaaaaatct
tgcaaaatattcagaccttgcccaagacaaaggaaatcattgagtagaga
agccatatgcctgtgaggaatgctgagtggtttaacatgaagtcaacact
ttctaccatcaataacgttcattctgcagagaaacttgcccaactgtgga
ggaagtgacaggcttttagtgtttcttcaaaccttaaataacaatgatct
tcttcctgaacattgacgttatcatttgaaggatgtagtagaggcattag
ttatcattcaatcctgattcaacctcaataattcattcctgacagaaact
gtacttatgtgcagaaaaagaccaaggcttagctacttatgtctatataa
gcatgaaagcctaacatctgaatgcgtgctttcctggatcatagtgcctt
atgggcctatctgggggctttttctttttctttttcttctactttttctt
ttcttttctcttcttttctttctctctttttggggggatggggcattttt
ttgattgttaactggtgtagtagtgtccagacaggacaagcatcgccacc
ttggggaagtgttcctgggttacgtaaggatggggtgggcaggagactaa
tacgtcaggaagcatggcttctgcttcacttgctgccctaacttccctgg
aaaagagacagcgacatttatgttgaaataaactatttcctccccaaggt
tgtctttggtcatgccatccgtgacaccaacaaatcagtgtaggcaagca
ttagaggcatttccttcccccttgccccccacccccaccccccccattac
ctcgggtggcatccggctacacaactagaggcagtgtctcaaaaacttt
gaattctcttgtgtatagaacataaagttgtagtatggaaggccttgcca
catacttcacaactatagggtttttcacctgtatgtattctcttgtggtt
agaaaataatgatggacaacgaaactccttgccacacacttcacatttgt
aaggtttctttcctgtatgagttctcttgtgttcagaaagtgatgatgga
acatgaaaggccttcccacatacttcacacttgtacggtttctctcctgt
atgaattgtcttatggttagaaagtcttgacagataatggaaggccttac
cacatacttcacacttgtagggtttttcttctgtatgaattatcttgtgt
tttgaaagtaatgatggatagtggaaggccttgccacatacttcacactt
gtagggtttccctcctgtatgagttctcttgtgttcacaaagtgatgatg
gagagcggtaggcctttccacatactttacacttgtatggtttctctcct
gtatgaattttcttatgttttgaaagtcttgatggatattcgaaggcctt
gccacatacttcacacttgcaaggattctttcccatatgaattatcttgt
gtttagaaaggaataatgaagtgcagaaggccttgccacatacttcacag
ttgtagggtttttctcctgtgtgaattatcctgtgttgaaaaagttttga
tggaacatgaaaggccttgctatgtatttcacacttgtagggtttttctc
ctgtatgaatccttttgtgttcagaaagtagtgatgaaaaatggaaggac
ttgccacactcttcacactttgcaggacttcactcctaaatgaattatct
gatgattttgaaatccttttttccgcctcaaagacttttgccacatttct
ttacacgtatagctttttcccccctggtggagtaaagagtttgagaaatt
taatgaaagagagcaaaaaattctgtaatatctattacgaattggttttt
taaaaaccaacatttactccacttgcatttatttgtaccaatcataagcc
taacaccccatttttctgtaccttgtattctgtgaaacattattaaacac
atgaatagttgaaacttaattaagccttccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_67590955_67591850
seq2: B6Ng01-209G11.b_46_944 (reverse)

seq1  AAAGGTTTTGTGACACTGCCTCTAG-TGTGTAGCCGGATGCCAACCGAGG  49
      |||| ||||| |||||||||||||| ||||||||||||||||| ||||||
seq2  AAAGTTTTTGAGACACTGCCTCTAGTTGTGTAGCCGGATGCCACCCGAGG  50

seq1  T-ATGGGGGGGGTGGGGGTGGGGGGC-AGGGGGAAGGAAATGCCTCTAAT  97
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAATGGGGGGGGTGGGGGTGGGGGGCAAGGGGGAAGGAAATGCCTCTAAT  100

seq1  GCTTGCCTACACTGATTTGTTGGTGTCACGGATGGCATGACCAAAGACAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTACACTGATTTGTTGGTGTCACGGATGGCATGACCAAAGACAA  150

seq1  CCTTGGGGAGGAAATAGTTTATTTCAACATAAATGTCGCTGTCTCTTTTC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGAGGAAATAGTTTATTTCAACATAAATGTCGCTGTCTCTTTTC  200

seq1  CAGGGAAGTTAGGGCAGCAAGTGAAGCAGAAGCCATGCTTCCTGACGTAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGTTAGGGCAGCAAGTGAAGCAGAAGCCATGCTTCCTGACGTAT  250

seq1  TAGTCTCCTGCCCACCCCATCCTTACGTAACCCAGGAACACTTCCCCAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCCTGCCCACCCCATCCTTACGTAACCCAGGAACACTTCCCCAAG  300

seq1  GTGGCGATGCTTGTCCTGTCTGGACACTACTACACCAGTTAACAATCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGATGCTTGTCCTGTCTGGACACTACTACACCAGTTAACAATCAAA  350

seq1  AAAATGCCCCATCCCCCCAAAAAGAGAGAAAGAAAAGAAGAGAAAAGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCCCATCCCCCCAAAAAGAGAGAAAGAAAAGAAGAGAAAAGAAA  400

seq1  AGAAAAAGTAGAAGAAAAAGAAAAAGAAAAAGCCCCCAGATAGGCCCATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGTAGAAGAAAAAGAAAAAGAAAAAGCCCCCAGATAGGCCCATA  450

seq1  AGGCACTATGATCCAGGAAAGCACGCATTCAGATGTTAGGCTTTCATGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTATGATCCAGGAAAGCACGCATTCAGATGTTAGGCTTTCATGCT  500

seq1  TATATAGACATAAGTAGCTAAGCCTTGGTCTTTTTCTGCACATAAGTACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGACATAAGTAGCTAAGCCTTGGTCTTTTTCTGCACATAAGTACA  550

seq1  GTTTCTGTCAGGAATGAATTATTGAGGTTGAATCAGGATTGAATGATAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGTCAGGAATGAATTATTGAGGTTGAATCAGGATTGAATGATAAC  600

seq1  TAATGCCTCTACTACATCCTTCAAATGATAACGTCAATGTTCAGGAAGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCTCTACTACATCCTTCAAATGATAACGTCAATGTTCAGGAAGAA  650

seq1  GATCATTGTTATTTAAGGTTTGAAGAAACACTAAAAGCCTGTCACTTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGTTATTTAAGGTTTGAAGAAACACTAAAAGCCTGTCACTTCCT  700

seq1  CCACAGTTGGGCAAGTTTCTCTGCAGAATGAACGTTATTGATGGTAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTTGGGCAAGTTTCTCTGCAGAATGAACGTTATTGATGGTAGAAA  750

seq1  GTGTTGACTTCATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGACTTCATGTTAAACCACTCAGCATTCCTCACAGGCATATGGCTT  800

seq1  CTCTACTCAATGATTTCCTTTGTCTTGGGCAAGGTCTGAATATTTTGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCAATGATTTCCTTTGTCTTGGGCAAGGTCTGAATATTTTGCAA  850

seq1  GATTTTTTATCACATATCACTTGTCAAATTTTCTATTAAGAGTGAATTC  896
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTATCACATATCACTTGTCAAATTTTCTATTAAGAGTGAATTC  899

seq1: chr13_67418492_67419113
seq2: B6Ng01-209G11.g_558_1195

seq1  TCCTGTATGAATTTTCTTATGTTTTGAAAGTCTTGATGGATATTCGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTATGAATTTTCTTATGTTTTGAAAGTCTTGATGGATATTCGAAGG  50

seq1  CCTTGCCACATACTTCACACTTGCAAGGATTCTTTCCCATATGAATTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCACATACTTCACACTTGCAAGGATTCTTTCCCATATGAATTATC  100

seq1  TTGTGTTTAGAAAGGAATAATGAAGTGCAGAAGGCCTTGCCACATACTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTAGAAAGGAATAATGAAGTGCAGAAGGCCTTGCCACATACTTC  150

seq1  ACAGTTGTAGGGTTTTTCTCCTGTGTGAATTATCCTGTGTTGAAAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGTAGGGTTTTTCTCCTGTGTGAATTATCCTGTGTTGAAAAAGTT  200

seq1  TTGATGGAACATGAAAGGCCTTGCTATGTATTTCACACTTGTAGGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAACATGAAAGGCCTTGCTATGTATTTCACACTTGTAGGGTTTT  250

seq1  TCTCCTGTATGAATCCTTTTGTGTTCAGAAAGTAGTGATGAAAAATGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGTATGAATCCTTTTGTGTTCAGAAAGTAGTGATGAAAAATGGAA  300

seq1  GGACTTGCCACACTCTTCACAC-TTGCAGGACTTCACTCCTAAATGAATT  349
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGACTTGCCACACTCTTCACACTTTGCAGGACTTCACTCCTAAATGAATT  350

seq1  ATCTGATGATTTTGAAATCC-TTTTTCCGCCTCAAAGAC-TTTGCCACA-  396
      |||||||||||||||||||| |||||||||||||||||| ||||||||| 
seq2  ATCTGATGATTTTGAAATCCTTTTTTCCGCCTCAAAGACTTTTGCCACAT  400

seq1  TTCTTTACACGTATAGC-TTTTCCCCCCTGGT-GAGT-AAGAG-TTGAGA  442
      ||||||||||||||||| |||||||||||||| |||| ||||| ||||||
seq2  TTCTTTACACGTATAGCTTTTTCCCCCCTGGTGGAGTAAAGAGTTTGAGA  450

seq1  AA-TTAATGAAAAGAGAGCAAAAAAATCTGT-ATATCTA-TACGAATT-G  488
      || |||||| ||||||||||||||| ||||| ||||||| |||||||| |
seq2  AATTTAATG-AAAGAGAGCAAAAAATTCTGTAATATCTATTACGAATTGG  499

seq1  TTTTTTAAAAACCAACATTTACT-CACTTGCATTTATTTGTACAAATCAT  537
      ||||||||||||||||||||||| ||||||||||||||||||| ||||||
seq2  TTTTTTAAAAACCAACATTTACTCCACTTGCATTTATTTGTACCAATCAT  549

seq1  AAGC--TACA-CCCAATTTTCTGTACC-TGTATTCTGTGAAACATAATTT  583
      ||||   ||| |||| ||||||||||| ||||||||||||||||| ||| 
seq2  AAGCCTAACACCCCATTTTTCTGTACCTTGTATTCTGTGAAACATTATT-  598

seq1  AAAACACA-GAATAAGTGAAAATT-ATATAGCCTTCCTTGA  622
       ||||||| |||||  ||||| || ||  ||||||||||||
seq2  -AAACACATGAATAGTTGAAACTTAATTAAGCCTTCCTTGA  638