BAC Information

Click to search

BAC

Clone NameB6Ng01-209J23
Chromosome13 (Build37)
Map Location 58,025,828 - 58,190,958
singlet/doubletdoublet
Overlap geneKlhl3
Upstream geneLOC100040995, Spock1
Downstream geneHnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J23.bB6Ng01-209J23.g
ACCGA028191GA028192
length348938
definitionB6Ng01-209J23.b B6Ng01-209J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,025,828 - 58,026,175)(58,190,005 - 58,190,958)
sequence
atgtgaactgtgtaccacacaggtaccccgtcatcccacagattctgggg
ttctccagcactcctgcagcactggtgacttcaagtcctgtggttcctgg
gattcaggccccttgtctatgaacttatcatgtacattgttactttgtaa
caatagaagacgctgacttacacagagcatttaaactgacttaggcggtt
taaaacaatctgtaggtggtggaggtatagaggttatccctataggcttt
gtgccactttatataagaaacacaagctaccaagagacactaaagctaag
gactccggggtgctcagggaagctgtttggttgggttgggttgggttg
gaattctcggacagttgtgagcattgtctcttgtgattattgttcgtttc
actgtcttatttaggaagctgtgttttgaaagatgtgttttgaaatcccc
tgtcttcatttcaaaattaggttatttttttctgttgattattcagttgc
aagttagagttttggttttacactctagatagatgcccaattctcatata
aatgttttgccaagaaagtcattctaaggacgggaaatcgatatttccca
acaatgtcctttaaactgaaaatgttttaaacatgggcatctcatatagc
agcttttttttcttttgtgatttatacttttgatgggatagctaggcagc
cactgctctatctgaagccatgatttcttctgctaggctgatatttctga
gtcttacactgaggggtttgctttgcttgggtggtttggttgtaaagagg
cttaaatgacgctgtgtctggggaagaaacgccaagataagattgctcag
caaatggtattacatcagtgacttggaaagggtgatggaaaagttcttgg
attggcagggtcttggggcacctttaggttctcacatatccatttttttt
tcttttatgagatgctggggactgaactcagaatcttaagtaggccaggc
aggcacccttctactgactctaccctgagccagtggttttcaaccttcct
gactctgcaacatttagacagttcctcatgctgtggtgaaccaggacatc
atttttgttgcctacttcatactgtaatttttctcactgttatgattgga
atataaaatttttggagatagaggttgccacgggttcacagaaccacagg
tgaaaacccacttcctaagccatttttactttttggtttgagactggtca
cataggctcacaagactaacttggcctgaactcaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_58025828_58026175
seq2: B6Ng01-209J23.b_52_399

seq1  ATGTGAACTGTGTACCACACAGGTACCCCGTCATCCCACAGATTCTGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTGTGTACCACACAGGTACCCCGTCATCCCACAGATTCTGGGG  50

seq1  TTCTCCAGCACTCCTGCAGCACTGGTGACTTCAAGTCCTGTGGTTCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAGCACTCCTGCAGCACTGGTGACTTCAAGTCCTGTGGTTCCTGG  100

seq1  GATTCAGGCCCCTTGTCTATGAACTTATCATGTACATTGTTACTTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAGGCCCCTTGTCTATGAACTTATCATGTACATTGTTACTTTGTAA  150

seq1  CAATAGAAGACGCTGACTTACACAGAGCATTTAAACTGACTTAGGCGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGAAGACGCTGACTTACACAGAGCATTTAAACTGACTTAGGCGGTT  200

seq1  TAAAACAATCTGTAGGTGGTGGAGGTATAGAGGTTATCCCTATAGGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAATCTGTAGGTGGTGGAGGTATAGAGGTTATCCCTATAGGCTTT  250

seq1  GTGCCACTTTATATAAGAAACACAAGCTACCAAGAGACACTAAAGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACTTTATATAAGAAACACAAGCTACCAAGAGACACTAAAGCTAAG  300

seq1  GACTCCGGGGTGCTCAGGGAAGCTGTTTGGTTGGGTTGGGTTGGGTTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCGGGGTGCTCAGGGAAGCTGTTTGGTTGGGTTGGGTTGGGTTG  348

seq1: chr13_58190005_58190958
seq2: B6Ng01-209J23.g_68_1005 (reverse)

seq1  ATCTTGAGTTCAAGGCCACAGGTTAATGGTCTTGTGAGACCTAGTGAGAC  50
      ||||||||||| ||||  || ||||   |||||||||| |||| || |||
seq2  ATCTTGAGTTC-AGGC--CAAGTTA---GTCTTGTGAG-CCTA-TGTGAC  42

seq1  CATGTCTCAAAACAAAAAGTAAAATAGGCCTTAGGGCAGTGGTTCTCAAC  100
      || |||||||| |||||||||||| | | |||| || ||||| | |  ||
seq2  CA-GTCTCAAACCAAAAAGTAAAA-ATGGCTTA-GGAAGTGGGTTTTCAC  89

seq1  CTGTGGGTC-GTGACCCCGTTGGCAAACCTCTATCTCCAAAAATATTTAT  149
      |||||| || |||| |||| |||| ||||||||||||||||||| |||||
seq2  CTGTGGTTCTGTGAACCCG-TGGC-AACCTCTATCTCCAAAAAT-TTTAT  136

seq1  ATTACAATTCATAACAGT-AGAAAAATTACAGTTATGAAGTA-GCAACAA  197
      ||| ||| |||||||||| ||||||||||||| ||||||||| |||||||
seq2  ATTCCAA-TCATAACAGTGAGAAAAATTACAG-TATGAAGTAGGCAACAA  184

seq1  AAATGATGTCCTGGTTCACCACAGCATGAGGAACTGTCTTAAATGTTTGC  247
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  AAATGATGTCCTGGTTCACCACAGCATGAGGAACTGTC-TAAATG-TTGC  232

seq1  AGAGTCAGGAAGGTTGAAAACCACTGGCTCAGGGTAGAGGTCAGTAGAGG  297
      |||||||||||||||||||||||||||||||||||||| ||||||||| |
seq2  AGAGTCAGGAAGGTTGAAAACCACTGGCTCAGGGTAGA-GTCAGTAGAAG  281

seq1  GGTGCCTGCCTGGCCTACTTAAGATTCTGAGTTCAGTCCCCAGCATCTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTGCCTGGCCTACTTAAGATTCTGAGTTCAGTCCCCAGCATCTCA  331

seq1  TAAAAGAAAAAAAAATGGATATGTGAGAACCTAAAGGTGCCCCCAAGACC  397
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAAGAAAAAAAAATGGATATGTGAGAACCTAAAGGTG-CCCCAAGACC  380

seq1  CTGCCAATCCAAGAACTTTTCCATCACCC-TTCCAAGTCACTGATGTAAT  446
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGCCAATCCAAGAACTTTTCCATCACCCTTTCCAAGTCACTGATGTAAT  430

seq1  ACCATTTGCTGAGCAATCTTATCTTGGCGTTTCTTCCCCAGACACAGCGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGCTGAGCAATCTTATCTTGGCGTTTCTTCCCCAGACACAGCGT  480

seq1  CATTTAAGCCTCTTTACAACCAAACCACCCAAGCAAAGCAAACCCCTCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGCCTCTTTACAACCAAACCACCCAAGCAAAGCAAACCCCTCAG  530

seq1  TGTAAGACTCAGAAATATCAGCCTAGCAGAAGAAATCATGGCTTCAGATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACTCAGAAATATCAGCCTAGCAGAAGAAATCATGGCTTCAGATA  580

seq1  GAGCAGTGGCTGCCTAGCTATCCCATCAAAAGTATAAATCACAAAAGAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGGCTGCCTAGCTATCCCATCAAAAGTATAAATCACAAAAGAAA  630

seq1  AAAAAGCTGCTATATGAGATGCCCATGTTTAAAACATTTTCAGTTTAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTGCTATATGAGATGCCCATGTTTAAAACATTTTCAGTTTAAAG  680

seq1  GACATTGTTGGGAAATATCGATTTCCCGTCCTTAGAATGACTTTCTTGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTGGGAAATATCGATTTCCCGTCCTTAGAATGACTTTCTTGGC  730

seq1  AAAACATTTATATGAGAATTGGGCATCTATCTAGAGTGTAAAACCAAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTATATGAGAATTGGGCATCTATCTAGAGTGTAAAACCAAAAC  780

seq1  TCTAACTTGCAACTGAATAATCAACAGAAAAAAATAACCTAATTTTGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTGCAACTGAATAATCAACAGAAAAAAATAACCTAATTTTGAAA  830

seq1  TGAAGACAGGGGATTTCAAAACACATCTTTCAAAACACAGCTTCCTAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGGGGATTTCAAAACACATCTTTCAAAACACAGCTTCCTAAAT  880

seq1  AAGACAGTGAAACGAACAATAATCACAAGAGACAATGCTCACAACTGTCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTGAAACGAACAATAATCACAAGAGACAATGCTCACAACTGTCC  930

seq1  GAGAATTC  954
      ||||||||
seq2  GAGAATTC  938