BAC Information

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BAC

Clone NameB6Ng01-210M20
Chromosome13 (Build37)
Map Location 79,309,859 - 79,435,944
singlet/doubletdoublet
Overlap genenone
Upstream geneNr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210M20.bB6Ng01-210M20.g
ACCGA029044GA029045
length1,0121,202
definitionB6Ng01-210M20.b B6Ng01-210M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,309,859 - 79,310,821)(79,434,827 - 79,435,944)
sequence
gaattcccttgatgtgataggtatttatattcaggagccggagacatggc
ccatgcggaagagaactgactattttgattcccaatacgcacatggtaat
gcactatgttctgtaactccatttccaaggaatccaatgtcctattctgg
tctcagcagttgtcaagcatatacgacagagacagacatatatgcaggca
aaacgactaatcctattaaattaaatgaaaacacacagcaggcattcatc
tcccagaatttaatcatataattttcttttcatttatgtgtaacctaata
tatattgattttaactgttttagttttttacacaaatgagtaaaaccacc
ttaataccttgctacagaaataaaaatatattctcatttaatgtattcat
tattttaatttgggatccttataatcagacaaacttgtcgaaagatagaa
tagtttttatactatgtaatataacttttattcactagtttaaattgttg
tcttcaactaaataagctcaccttttctagttctttcagaaatatgcctg
gatggtgcaagtcctctgttctggctcagtcctccactccaagcagattg
aatctatctggcttctcttctcacttaattgctctctttggaaaaactgc
ctctaaattttgggaaccaaactgcattaaacagaattcaactgcatggc
ctgaactcaattgaacttcactgattaaattgtcctccattcctgactca
ctctgtgctgctctcttaagtaacctctctctccagtctttccttatgct
agttgggattgtccaatctctggctctttctgtcaaatctgactttgact
catcactttgtctatccctcagttagtcatcactttcaaacatggctgct
cagttttataaactaactttaccttcattgtttgggattaaaggtgtgta
ctaagggtatgtctgtattccagccagatcatactataaatccaatgtgt
atctgcattctg

gaattctcatttgacattttacaaacagaaatatctctttattaattcct
gttgtttctgctgccacctttgctcaaacagggatttttttttaactgac
cgactgattttcgataatgagaattagagtggtaaagttgaatacaatac
tttactatcccctttttttgcaatttcaaaaagagctttagtttgtatat
ctgatgggatggccagtaaattaaaagaaaatttttttgtaaaaatatat
aacagaaatcaatattaaaactgcctattctaaattcatactcagctaag
gatcttgtctgattgcagagtttctgtatcctgatatctttctgtaattg
ctgcctttgatgctttgaaggatttatattttgaggttaatatcattaaa
gacatgtgtgttatcatgcaagcaattcaatatagatcattattgaatta
agctgtaattgtatcttcctttgagcaagtgaattcatattcaaaaatga
aaactgtttatgtttgtgagtgctccaagaatatatatatatccacatat
atctctgaaaaataaacaaaagtaattaccattctacaatgcctataaaa
caaataatactgatatagacaaaggcatttattgtaaactgttgatacta
ttaaagtgatagctgtttatttaaaattaatctaaagcagaatttattag
tcatgttgaaatgattctagttactgatgttagatatcctgattaattta
agtttaaaataagaatgcaagtcaacgatatccttgacaaagtaggatag
cttcttaaattaatgaaataaaatatctatgtaacttatgaattctaacc
cataattcagatctgctggctgagcctttctttccatcaaatttgaaatt
tccctgatgaccgggaagagtaagaacttggagaacgaaagttccaggag
acattttccatgcagcataagcacacagcatattcattttaattttctgc
tcaactttttaaagttgtaaaagaagaaaaactatccttgtaatagtgtt
ttcccttaagacaagcgtgtgaactaatattcagctgttttcgttactat
gcataccttctgtgagaatgattttcccagtccaagtacatcttggaatt
tctaaatcagtccatgtgtcctttggaaaggttctcacactctctgtgag
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79309859_79310821
seq2: B6Ng01-210M20.b_43_1005

seq1  GAATTCCCTTGATGTGATAGGTATTTATATTCAGGAGCCGGAGACATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTGATGTGATAGGTATTTATATTCAGGAGCCGGAGACATGGC  50

seq1  CCATGCGGAAGAGAACTGACTATTTTGATTCCCAATACGCACATGGTAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCGGAAGAGAACTGACTATTTTGATTCCCAATACGCACATGGTAAT  100

seq1  GCACTATGTTCTGTAACTCCATTTCCAAGGAATCCAATGTCCTATTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGTTCTGTAACTCCATTTCCAAGGAATCCAATGTCCTATTCTGG  150

seq1  TCTCAGCAGTTGTCAAGCATATACGACAGAGACAGACATATATGCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAGTTGTCAAGCATATACGACAGAGACAGACATATATGCAGGCA  200

seq1  AAACGACTAATCCTATTAAATTAAATGAAAACACACAGCAGGCATTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGACTAATCCTATTAAATTAAATGAAAACACACAGCAGGCATTCATC  250

seq1  TCCCAGAATTTAATCATATAATTTTCTTTTCATTTATGTGTAACCTAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAATTTAATCATATAATTTTCTTTTCATTTATGTGTAACCTAATA  300

seq1  TATATTGATTTTAACTGTTTTAGTTTTTTACACAAATGAGTAAAACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGATTTTAACTGTTTTAGTTTTTTACACAAATGAGTAAAACCACC  350

seq1  TTAATACCTTGCTACAGAAATAAAAATATATTCTCATTTAATGTATTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACCTTGCTACAGAAATAAAAATATATTCTCATTTAATGTATTCAT  400

seq1  TATTTTAATTTGGGATCCTTATAATCAGACAAACTTGTCGAAAGATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATTTGGGATCCTTATAATCAGACAAACTTGTCGAAAGATAGAA  450

seq1  TAGTTTTTATACTATGTAATATAACTTTTATTCACTAGTTTAAATTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTATACTATGTAATATAACTTTTATTCACTAGTTTAAATTGTTG  500

seq1  TCTTCAACTAAATAAGCTCACCTTTTCTAGTTCTTTCAGAAATATGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACTAAATAAGCTCACCTTTTCTAGTTCTTTCAGAAATATGCCTG  550

seq1  GATGGTGCAAGTCCTCTGTTCTGGCTCAGTCCTCCACTCCAAGCAGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCAAGTCCTCTGTTCTGGCTCAGTCCTCCACTCCAAGCAGATTG  600

seq1  AATCTATCTGGCTTCTCTTCTCACTTAATTGCTCTCTTTGGAAAAACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCTGGCTTCTCTTCTCACTTAATTGCTCTCTTTGGAAAAACTGC  650

seq1  CTCTAAATTTTGGGAACCAAACTGCATTAAACAGAATTCAACTGCATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAATTTTGGGAACCAAACTGCATTAAACAGAATTCAACTGCATGGC  700

seq1  CTGAACTCAATTGAACTTCACTGATTAAATTGTCCTCCATTCCTGACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCAATTGAACTTCACTGATTAAATTGTCCTCCATTCCTGACTCA  750

seq1  CTCTGTGCTGCTCTCTTAAGTAACCTCTCTCTCCAGTCTTTCCTTATGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCTGCTCTCTTAAGTAACCTCTCTCTCCAGTCTTTCCTTATGCT  800

seq1  AGTTGGGATTGTCCAATCTCTGGCTCTTTCTGTCAAATCTGACTTTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGATTGTCCAATCTCTGGCTCTTTCTGTCAAATCTGACTTTGACT  850

seq1  CATCACTTTGTCTATCCCTCAGTTAGTCATCACTTTCAAACATGGCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTTTGTCTATCCCTCAGTTAGTCATCACTTTCAAACATGGCTGCT  900

seq1  CAGTTTTATAAACTAACTTTACCTTCATTGTTTGGGATTAAAGGTGTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTATAAACTAACTTTACCTTCATTGTTTGGGATTAAAGGTGTGTA  950

seq1  CTAAGGGTATGTC  963
      |||||||||||||
seq2  CTAAGGGTATGTC  963


seq1: chr13_79434827_79435944
seq2: B6Ng01-210M20.g_67_1268 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATCTCACAGAGAGTGTGAGAACCTTTCCAAAGGACACATGGACTGATTTA  50

seq1  ----------------------------------ATCTCACAGAA-GTAT  15
                                         |||||||||| ||||
seq2  GAAATTCCAAGATGTACTTGGACTGGGAAAATCATTCTCACAGAAGGTAT  100

seq1  GCATAGTAACG-AAACAGCTG-ATATTAGTTCACACGCTTTGTCTTAAGG  63
      ||||||||||| ||||||||| |||||||||||||||| |||||||||||
seq2  GCATAGTAACGAAAACAGCTGAATATTAGTTCACACGC-TTGTCTTAAGG  149

seq1  GAAAACACTATTACCAAGGATAGTTTTTCTTCTTTTACAACTTTTAAAAA  113
      ||||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  GAAAACACTATTA-CAAGGATAGTTTTTCTTCTTTTACAAC-TTTAAAAA  197

seq1  GTTGAGCAGAAAATTAAAATGAATTATGCTTGTTGTGCTTATGCTGCATG  163
      ||||||||||||||||||||||| ||||||   |||||||||||||||||
seq2  GTTGAGCAGAAAATTAAAATGAA-TATGCT--GTGTGCTTATGCTGCATG  244

seq1  GAAAATGTCTCCTGGAACTTTCGTTCTCCAAGTTCTTACTCTT-CCGGTC  212
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAAATGTCTCCTGGAACTTTCGTTCTCCAAGTTCTTACTCTTCCCGGTC  294

seq1  ATCAGG--AAATTCAAATTTGATGGAAAGAAAGGCTCAGCCAGCAGATCT  260
      ||||||  || |||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAAATTTCAAATTTGATGGAAAGAAAGGCTCAGCCAGCAGATCT  344

seq1  GAATTATGGGTTAGAATTCATAAGTTACATAGATATTTTATTTCATTAAT  310
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGGGTTAGAATTCATAAGTTACATAGATATTTTATTTCATTAAT  394

seq1  TTAAGAAGCTATCCTACTTTGTCAAGGATATCGTTGACTTGCATTCTTAT  360
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAGCTATCCTACTTTGTCAAGGATATCGTTGACTTGCATTCTTAT  444

seq1  TTTAAACTTAAATTAATCAGGATATCTAACATCAGTAACTAGAATCATTT  410
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTAAATTAATCAGGATATCTAACATCAGTAACTAGAATCATTT  494

seq1  CAACATGACTAATAAATTCTGCTTTAGATTAATTTTAAATAAACAGCTAT  460
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGACTAATAAATTCTGCTTTAGATTAATTTTAAATAAACAGCTAT  544

seq1  CACTTTAATAGTATCAACAGTTTACAATAAATGCCTTTGTCTATATCAGT  510
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTAATAGTATCAACAGTTTACAATAAATGCCTTTGTCTATATCAGT  594

seq1  ATTATTTGTTTTATAGGCATTGTAGAATGGTAATTACTTTTGTTTATTTT  560
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTTTTATAGGCATTGTAGAATGGTAATTACTTTTGTTTATTTT  644

seq1  TCAGAGATATATGTGGATATATATATATTCTTGGAGCACTCACAAACATA  610
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATATATGTGGATATATATATATTCTTGGAGCACTCACAAACATA  694

seq1  AACAGTTTTCATTTTTGAATATGAATTCACTTGCTCAAAGGAAGATACAA  660
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTTTCATTTTTGAATATGAATTCACTTGCTCAAAGGAAGATACAA  744

seq1  TTACAGCTTAATTCAATAATGATCTATATTGAATTGCTTGCATGATAACA  710
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCTTAATTCAATAATGATCTATATTGAATTGCTTGCATGATAACA  794

seq1  CACATGTCTTTAATGATATTAACCTCAAAATATAAATCCTTCAAAGCATC  760
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCTTTAATGATATTAACCTCAAAATATAAATCCTTCAAAGCATC  844

seq1  AAAGGCAGCAATTACAGAAAGATATCAGGATACAGAAACTCTGCAATCAG  810
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGCAATTACAGAAAGATATCAGGATACAGAAACTCTGCAATCAG  894

seq1  ACAAGATCCTTAGCTGAGTATGAATTTAGAATAGGCAGTTTTAATATTGA  860
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCCTTAGCTGAGTATGAATTTAGAATAGGCAGTTTTAATATTGA  944

seq1  TTTCTGTTATATATTTTTACAAAAAAATTTTCTTTTAATTTACTGGCCAT  910
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTATATATTTTTACAAAAAAATTTTCTTTTAATTTACTGGCCAT  994

seq1  CCCATCAGATATACAAACTAAAGCTCTTTTTGAAATTGCAAAAAAAGGGG  960
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAGATATACAAACTAAAGCTCTTTTTGAAATTGCAAAAAAAGGGG  1044

seq1  ATAGTAAAGTATTGTATTCAACTTTACCACTCTAATTCTCATTATCGAAA  1010
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAGTATTGTATTCAACTTTACCACTCTAATTCTCATTATCGAAA  1094

seq1  ATCAGTCGGTCAGTTAAAAAAAAATCCCTGTTTGAGCAAAGGTGGCAGCA  1060
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCGGTCAGTTAAAAAAAAATCCCTGTTTGAGCAAAGGTGGCAGCA  1144

seq1  GAAACAACAGGAATTAATAAAGAGATATTTCTGTTTGTAAAATGTCAAAT  1110
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAACAGGAATTAATAAAGAGATATTTCTGTTTGTAAAATGTCAAAT  1194

seq1  GAGAATTC  1118
      ||||||||
seq2  GAGAATTC  1202


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