BAC Information

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BAC

Clone NameB6Ng01-211B15
Chromosome13 (Build37)
Map Location 106,819,721 - 106,926,133
singlet/doubletdoublet
Overlap genenone
Upstream geneRgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a, EG668025
Downstream geneOlfr717-ps1, LOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211B15.bB6Ng01-211B15.g
ACCGA029269GA029270
length1,113798
definitionB6Ng01-211B15.b B6Ng01-211B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,819,721 - 106,820,653)(106,925,336 - 106,926,133)
sequence
gaattcctggtcaaaagtccttggcttgtgaagtcatagcctttagagta
gaacgtgatcttgtttacttactgaattataatgctgtcaatatacctct
tagatttctacccttatatagacctgtgctgctgacaaccttgatcatag
gggtgacttgcaatgtgaagcagccgacagtgagataaataactggttga
agtgctgagcataagagcttgagcacaggccttgacggaatttccatata
gtatatattcttatatcactctccaccaccactaaggcttgagaaacata
gctgaagaggaggcagaaagagtgtaagagctggtgggtaggaaggagat
ctgtgcaatgggtgtcatctggagatgtctatcactctcataaagtcaga
gcagccatggttatgtaaacaagagatcaaaccattcattggccccactc
attattgaggaactattaataatgtggagttgtagtgaaggtagaaaatc
cctctagttttttttaatatgttgccactgctaggtctcccatgctttag
tggatggtaccacatccttaacctattgtattttgtgggttatttttaaa
aatggacatgagtttggaagggaatacgttgaggggtatatagaggagaa
ctggtaaatatgatcatattttgcatatatatatacatatttatattttt
caagaggatgaaaatgtttaaactcccactttgctttttcgcttttatta
aacatagataattaattctatcatacaatatattctaaatgcagcttcct
ctccctctactcctcctagttcttctcccaactcctttctcacccacatc
cactcattttctttctctcattagaaaaacgatgggtatctatgagataa
caacaaaatataacaaaataaaacataaggtaaaacaaaaactagcatat
acatatgggaagttggagagacagacacagaatataaaagagcccaaagg
cacaaaaccagactcccactcatttgcacatagagcagttcataaaagtg
cgaaactgaaagttgcagtataacatgcagacctgtaagaacctgtgtag
cctctgttgctgc

gaattctttctcagctttgaaaaatatcacccttgtgatgttctgatgta
aaagaaaacaacagggtatgaaaaagacaacttcagtattaagagaacac
aatggagaaagtcaaaggggatgtgtcctgtccaataggactcagttatt
cgtcggtgtgagggggactgcaaacctgggagaaaatgggagggagagaa
aggagaagcagagaccaagaagagaattcctgtcaaggtctccgtttatt
aggctgaaacgctgggttttaaagcatacatcaaggggaataggtagtgg
ttgagggggaattaacaaagaacaaagaagtgggcatcagaggacatgag
ggccgaagtcaggctccaggaggcaggcactctttgccttatctccggaa
ttcggatcttccttaacagccttgggtgtcaggccgggctcagcacataa
ctaatgtccttggttgtcatgggagtcaggaaaagataaggaagagggga
ctataattcagcttttacagcctcaggtgccaggaagggaacagggagaa
ggcagtgacaacctgctccttagcacaaggccatttggcttgccaggatg
ggagactgtgaaaggctcgctttctcaaggtatggtctccaacagggatg
aacttgaaagggctaacagaaatagaaattggtagttttggaactcagta
cctcataagtattccatacatccaacacaagaatcttagaaagcagagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106819721_106820653
seq2: B6Ng01-211B15.b_233_1158

seq1  AATAACTGGTTGAAGTGCTGAGCATAAGAGCTTGAGCACAGGCCTTGACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGTTGAAGTGCTGAGCATAAGAGCTTGAGCACAGGCCTTGACG  50

seq1  GAATTTCCATATAGTATATATTCTTATATCACTCTCCACCACCACTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCCATATAGTATATATTCTTATATCACTCTCCACCACCACTAAGG  100

seq1  CTTGAGAAACATAGCTGAAGAGGAGGCAGAAAGAGTGTAAGAGCTGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAACATAGCTGAAGAGGAGGCAGAAAGAGTGTAAGAGCTGGTGG  150

seq1  GTAGGAAGGAGATCTGTGCAATGGGTGTCATCTGGAGATGTCTATCACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAGGAGATCTGTGCAATGGGTGTCATCTGGAGATGTCTATCACTC  200

seq1  TCATAAAGTCAGAGCAGCCATGGTTATGTAAACAAGAGATCAAACCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAGTCAGAGCAGCCATGGTTATGTAAACAAGAGATCAAACCATTC  250

seq1  ATTGGCCCCACTCATTATTGAGGAACTATTAATAATGTGGAGTTGTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCCCACTCATTATTGAGGAACTATTAATAATGTGGAGTTGTAGTG  300

seq1  AAGGTAGAAAATCCCTCTAGTTTTTTTTAATATGTTGCCACTGCTAGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGAAAATCCCTCTAGTTTTTTTTAATATGTTGCCACTGCTAGGTC  350

seq1  TCCCATGCTTTAGTGGATGGTACCACATCCTTAACCTATTGTATTTTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTTTAGTGGATGGTACCACATCCTTAACCTATTGTATTTTGTG  400

seq1  GGTTATTTTTAAAAATGGACATGAGTTTGGAAGGGAATACGTTGAGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTTTTAAAAATGGACATGAGTTTGGAAGGGAATACGTTGAGGGGT  450

seq1  ATATAGAGGAGAACTGGTAAATATGATCATATTTTGCATATATATATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAGGAGAACTGGTAAATATGATCATATTTTGCATATATATATACA  500

seq1  TATTTATATTTTTCAAGAGGATGAAAATGTTTAAACTCCCACTTTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATATTTTTCAAGAGGATGAAAATGTTTAAACTCCCACTTTGCTTT  550

seq1  TTCGCTTTTATTAAACATAGATAATTAATTCTATCATACAATATATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTTTATTAAACATAGATAATTAATTCTATCATACAATATATTCTA  600

seq1  AATGCAGCTTCCTCTCCCTCTACTCCTCCTAGTTCTTCTCCCAACTCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCTTCCTCTCCCTCTACTCCTCCTAGTTCTTCTCCCAACTCCTT  650

seq1  TCTCACCCACATCCACTCATTTTCTTTCTCTCATTAGAAAAACGATGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCCACATCCACTCATTTTCTTTCTCTCATTAGAAAAACGATGGGT  700

seq1  ATCTATGAGATAACAACAAAATATAACAAAATAAAACATAAGGTAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGAGATAACAACAAAATATAACAAAATAAAACATAAGGTAAAACA  750

seq1  AAAACTAGCATATACATAT-GGAAGTTGGAGAAGACAAGACAACAGAAAT  799
      ||||||||||||||||||| ||||||||||| |||| |||| |||| |||
seq2  AAAACTAGCATATACATATGGGAAGTTGGAG-AGAC-AGAC-ACAG-AAT  796

seq1  ATAAAAGAGCCCAAAGGCACAAAACCAGACTCCCACTCATTTGCACATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAGCCCAAAGGCACAAAACCAGACTCCCACTCATTTGCACATAG  846

seq1  AGCAGTTTCATAAAAGTGCGAAACTGAAAGTTGCAGTAT-ACATGCAGAC  898
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGCAG-TTCATAAAAGTGCGAAACTGAAAGTTGCAGTATAACATGCAGAC  895

seq1  CTGGTTAAG-ACCTGTGTAGGCTCTGTGCTTGCTGC  933
      |||  |||| |||||||||| |||||   |||||||
seq2  CTG--TAAGAACCTGTGTAGCCTCTG---TTGCTGC  926


seq1: chr13_106925336_106926133
seq2: B6Ng01-211B15.g_65_862 (reverse)

seq1  CCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  50

seq1  CTCTGCTTTCTAAGATTCTTGTGTTGGATGTATGGAATACTTATGAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTTCTAAGATTCTTGTGTTGGATGTATGGAATACTTATGAGGTA  100

seq1  CTGAGTTCCAAAACTACCAATTTCTATTTCTGTTAGCCCTTTCAAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCCAAAACTACCAATTTCTATTTCTGTTAGCCCTTTCAAGTTCA  150

seq1  TCCCTGTTGGAGACCATACCTTGAGAAAGCGAGCCTTTCACAGTCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTGGAGACCATACCTTGAGAAAGCGAGCCTTTCACAGTCTCCCA  200

seq1  TCCTGGCAAGCCAAATGGCCTTGTGCTAAGGAGCAGGTTGTCACTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCAAGCCAAATGGCCTTGTGCTAAGGAGCAGGTTGTCACTGCCTT  250

seq1  CTCCCTGTTCCCTTCCTGGCACCTGAGGCTGTAAAAGCTGAATTATAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTTCCCTTCCTGGCACCTGAGGCTGTAAAAGCTGAATTATAGTC  300

seq1  CCCTCTTCCTTATCTTTTCCTGACTCCCATGACAACCAAGGACATTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCTTATCTTTTCCTGACTCCCATGACAACCAAGGACATTAGTT  350

seq1  ATGTGCTGAGCCCGGCCTGACACCCAAGGCTGTTAAGGAAGATCCGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGAGCCCGGCCTGACACCCAAGGCTGTTAAGGAAGATCCGAATT  400

seq1  CCGGAGATAAGGCAAAGAGTGCCTGCCTCCTGGAGCCTGACTTCGGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGATAAGGCAAAGAGTGCCTGCCTCCTGGAGCCTGACTTCGGCCCT  450

seq1  CATGTCCTCTGATGCCCACTTCTTTGTTCTTTGTTAATTCCCCCTCAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCTGATGCCCACTTCTTTGTTCTTTGTTAATTCCCCCTCAACC  500

seq1  ACTACCTATTCCCCTTGATGTATGCTTTAAAACCCAGCGTTTCAGCCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTATTCCCCTTGATGTATGCTTTAAAACCCAGCGTTTCAGCCTAA  550

seq1  TAAACGGAGACCTTGACAGGAATTCTCTTCTTGGTCTCTGCTTCTCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGGAGACCTTGACAGGAATTCTCTTCTTGGTCTCTGCTTCTCCTTT  600

seq1  CTCTCCCTCCCATTTTCTCCCAGGTTTGCAGTCCCCCTCACACCGACGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCCCATTTTCTCCCAGGTTTGCAGTCCCCCTCACACCGACGAA  650

seq1  TAACTGAGTCCTATTGGACAGGACACATCCCCTTTGACTTTCTCCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGTCCTATTGGACAGGACACATCCCCTTTGACTTTCTCCATTGT  700

seq1  GTTCTCTTAATACTGAAGTTGTCTTTTTCATACCCTGTTGTTTTCTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTAATACTGAAGTTGTCTTTTTCATACCCTGTTGTTTTCTTTTA  750

seq1  CATCAGAACATCACAAGGGTGATATTTTTCAAAGCTGAGAAAGAATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAACATCACAAGGGTGATATTTTTCAAAGCTGAGAAAGAATTC  798


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