BAC Information

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BAC

Clone NameB6Ng01-211L05
Chromosome13 (Build37)
Map Location 113,949,403 - 113,950,620
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik
Downstream geneGzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211L05.bB6Ng01-211L05.g
ACCGA029692GA029693
length1,2021,185
definitionB6Ng01-211L05.b B6Ng01-211L05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtagacaatagccatgagacttccagtggccagagcatccct
ccccatcctcttgctttctgcctcctctccccttcagtgtttttctaagt
gaagaaaaccaaactttagtaaaataaacagttacccatggaaagggaag
caacaggactgtggtcagtcaccttcttttagatcttccatgaatggtag
acttggtataaagcttaagtgaccaagtcacaataattttacccatgagt
gttttacctgcatctatgtatgtgcactatacacatgtatgttgttcaag
gaggccagaagagggcattggatctcctggagctggagctaaccatggat
gttacctgtggattctgtgaactgaacttgggttctctgagagagcaaca
agcactaacaatctactaacccatctctccaggccctacctataaattca
taatggaatatattttaaagaagaaaaactttctgcaaaacagaaataaa
cagacctccccagacaagaaataaataccctgaagtgtttgataaacata
attttgagataacattgctgtggtcattaaaagatcatttgaagcatata
gtatgagagagcaaatgagcaattgtgtatcttgttagatatttgaatgc
aaagataaaattgaatacccagtagccctggtttcaaatggaaagtactt
gcataaacttgctgtgtgtttcctttcaaaagcaagcgccctgcctgctg
tatgaaaatgaatgcagcgcagactcgcattgattatccacagtaaaagc
ataaaaaaaatgcaacccaacaagaagaagcagcataaaaaaatcaaggt
cagaggctgctgtcgcgtctccaagaatcaggaggtggttgttagcgcct
aacagagggagactccacacagaccaaagtgtccactccagacactaaac
tcactgccattccatggaaggtagaacacagagaggagtcttgttatgac
accgtatagtaaaatcactctggcactatgtgagaatgcttgtttcctca
acggccaatgtgagaagaaatgacacgagtgtccacactctatagtcaaa
gcttagcacgtgtggctaccgaaacatctgaattctgactgaattgatct
tgttaagatgccaagatgagcatcagttattgttaaagagaccacagagt
tg
gaattctcacctgaggaataccgaatggctgagaagcacttgaaaaatgt
tcagcatccttaatcatcagggaaatgctaatcaaaacaaccctgagatt
ccatctcacaccattcagaatggctaagatcaaaaattcaggtgacagca
gatgctggcaaggatgtggagaaagagaaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagtactaccggaggatcccgcaatacctctcctgggca
tatacccagaagatgtcccaacctgtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccgtcaacagaggaatggatacagaaaatgtggtacatttacacaatgg
aatactactcagctatttaaaaaaatgaatttatgaaattcctagccaaa
tggatggatctggagggcatcatcctgagtgaggttacacattcacaaag
gaattcacacaatatgtactcactgataagtggatattagcccaaaactt
aggatacccaagatataagatacaatttgctaaacacatgaaactcaaga
agaatgaagactgaagtgtggacactatgcccctccttagaattgggaac
aaagcacccatggaaggagttacagagaaaaagttaggagctgtgacgaa
agaatggaccatctagagactgccgtatccagggatccaccccataatca
gcttctaaacgctgacaccattgcatacactagcaagattttgctggaag
gacccagatatagctgtctcttgtgagactatgcccggggcctagcaaac
acagaagtggatgctcacagtcaggtagtggatgggatcacagggctccc
aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccc
tattggtggaacaacattctgaactaacagtaccccggagctcttgactc
tagctgcattatgtatcaaagattgctagtcggcatcactggaaagaaag
cccaatgaccacacaacctttatacgtcccagtactggaacgtcgaaggc
aataaatggaattgcggtggctaaggcagttggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_113949403_113950620
seq2: B6Ng01-211L05.b_46_1247

seq1  GAATTCATGTAGACAATAGCCATGAGACTTCCAGTGGCCAGAGCATCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTAGACAATAGCCATGAGACTTCCAGTGGCCAGAGCATCCCT  50

seq1  CCCCATCCTCTTGCTTTCTGCCTCCTCTCCCCTTCAGTGTTTTTCTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCCTCTTGCTTTCTGCCTCCTCTCCCCTTCAGTGTTTTTCTAAGT  100

seq1  GAAGAAAACCAAACTTTAGTAAAATAAACAGTTACCCATGGAAAGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAACCAAACTTTAGTAAAATAAACAGTTACCCATGGAAAGGGAAG  150

seq1  CAACAGGACTGTGGTCAGTCACCTTCTTTTAGATCTTCCATGAATGGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGACTGTGGTCAGTCACCTTCTTTTAGATCTTCCATGAATGGTAG  200

seq1  ACTTGGTATAAAGCTTAAGTGACCAAGTCACAATAATTTTACCCATGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTATAAAGCTTAAGTGACCAAGTCACAATAATTTTACCCATGAGT  250

seq1  GTTTTACCTGCATCTATGTATGTGCACTATACACATGTATGTTGTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCTGCATCTATGTATGTGCACTATACACATGTATGTTGTTCAAG  300

seq1  GAGGCCAGAAGAGGGCATTGGATCTCCTGGAGCTGGAGCTAACCATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAAGAGGGCATTGGATCTCCTGGAGCTGGAGCTAACCATGGAT  350

seq1  GTTACCTGTGGATTCTGTGAACTGAACTTGGGTTCTCTGAGAGAGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGTGGATTCTGTGAACTGAACTTGGGTTCTCTGAGAGAGCAACA  400

seq1  AGCACTAACAATCTACTAACCCATCTCTCCAGGCCCTACCTATAAATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAACAATCTACTAACCCATCTCTCCAGGCCCTACCTATAAATTCA  450

seq1  TAATGGAATATATTTTAAAGAAGAAAAACTTTCTGCAAAACAGAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAATATATTTTAAAGAAGAAAAACTTTCTGCAAAACAGAAATAAA  500

seq1  CAGACCTCCCCAGACAAGAAATAAATACCCTGAAGTGTTTGATAAACATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTCCCCAGACAAGAAATAAATACCCTGAAGTGTTTGATAAACATA  550

seq1  ATTTTGAGATAACATTGCTGTGGTCATTAAAAGATCATTTGAAGCATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAGATAACATTGCTGTGGTCATTAAAAGATCATTTGAAGCATATA  600

seq1  GTATGAGAGAGCAAATGAGCAATTGTGTATCTTGTTAGATATTTGAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGAGAGCAAATGAGCAATTGTGTATCTTGTTAGATATTTGAATGC  650

seq1  AAAGATAAAATTGAATACCCAGTAGCCCTGGTTTCAAATGGAAAGTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAAATTGAATACCCAGTAGCCCTGGTTTCAAATGGAAAGTACTT  700

seq1  GCATAAACTTGCTGTGTGTTTCCTTTCAAAAGCAAGCGCCCTGCCTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAACTTGCTGTGTGTTTCCTTTCAAAAGCAAGCGCCCTGCCTGCTG  750

seq1  TATGAAAATGAATGCAGCGCAGACTCGCATTGATTATCCACAGTAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAATGAATGCAGCGCAGACTCGCATTGATTATCCACAGTAAAAGC  800

seq1  ATAAAAAAAATGCAACCCAACAAGAAGAAGCAGCATAAAAAAATCAAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAATGCAACCCAACAAGAAGAAGCAGCATAAAAAAATCAAGGT  850

seq1  CAGAGGCTGCTGTCGCGTCTCCAAGAATCAGGAGGTGGTTGTTAGCGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTGCTGTCGCGTCTCCAAGAATCAGGAGGTGGTTGTTAGCGCCT  900

seq1  AACAGAGGGAGACTCCACACAGACCAAAGTGTCCACTCCAGACACTAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGGAGACTCCACACAGACCAAAGTGTCCACTCCAGACACTAAAC  950

seq1  TCACTGCCATTCCATGGAAGGTAGAACACAGAGAGGAGTCTTGTTAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCACTGCCATTCCATGGAAGGTAGAACACAGAGAGGAGTCTTGTT-ATGA  999

seq1  CACCGTAATAGTAAAAATCACTCTGGCAACTATGTGAAGAATGCTTGTTT  1050
      |||||| ||||| |||||||||||||| |||||||| |||||||||||||
seq2  CACCGT-ATAGT-AAAATCACTCTGGC-ACTATGTG-AGAATGCTTGTTT  1045

seq1  CCTCAACGGCCAAATGGTGAGAGAAAATGACACGAGTGTCCACACTCTAT  1100
      |||||||||||||   ||||||  ||||||||||||||||||||||||||
seq2  CCTCAACGGCCAA--TGTGAGAAGAAATGACACGAGTGTCCACACTCTAT  1093

seq1  AGTCAAAAGCCTAAGGCACGTGTGGCTACGGAGAACATCTGGATTCTGAA  1150
      |||| ||||| ||  |||||||||||||| || |||||||| |||||| |
seq2  AGTC-AAAGCTTA--GCACGTGTGGCTACCGA-AACATCTGAATTCTG-A  1138

seq1  CTGAATATGATTCTTGTTTAAAAGATTGACAAGAATGAGCATAGAGTATT  1200
      |||||| ||| |||||||   |||| || |||| ||||||||    ||||
seq2  CTGAAT-TGA-TCTTGTT---AAGA-TGCCAAG-ATGAGCATCAGTTATT  1181

seq1  GTTAAAGAG---CCAGAGTTG  1218
      |||||||||    ||||||||
seq2  GTTAAAGAGACCACAGAGTTG  1202