BAC Information

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BAC

Clone NameB6Ng01-213A05
Chromosome13 (Build37)13 (Build37)
Map Location 65,962,566 - 65,963,76266,434,301 - 66,435,228
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
Downstream geneLOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213A05.bB6Ng01-213A05.g
ACCGA030660GA030661
length1,1871,191
definitionB6Ng01-213A05.b B6Ng01-213A05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,962,566 - 65,963,762)(66,434,301 - 66,435,228)
sequence
gaattctatggacatataaatcactctagataaagggtctcaccataaat
tttatcaaaatatgagtaaagattatttcagttcaatatcacacacacaa
acatgcacagaaaacacatacacattgttctttacatcaggcgttgaagg
tcagtgtcatttttctctcaaaatactgtttgctgcgttatttttaaaat
attatttggtagtttatttttgacattgtcattcaattgctccttttttt
atatttgctgtctccaaaacaccctttgtcccactccctgcactcctaaa
atgcacatggcctcttatttcattaattcttactgaatgtgcacatattt
gcatatacatttatatttttaaacaaaaattgtaaagactgtgtaaaatt
gcatatatttatgttttaaaaggccacatagcagtaaaatcactcttaat
gacattctgctattgataaaaatcagggtcttgatcagccaccatctgag
atctttccttctgtaatagatagaaacaaatacaaacacccttagccagt
cagttttgagaatgtcaaagactttggaacacacattcataaataggctg
tctacataaaatcccttgtatcaggactcaggaaatatggtgacagtata
ggtagaagtatatcagtgccagaggggattgagaacacccaccatggaaa
acaggacttctaaaacatgaaagatagatgcacatatgaagttacagaga
atgtggcagcatgcacagggcctgcatggttctgttgaaaatgggttctc
aatagtcagaggggaatgaagtacatcaccattccaatccagttgatagt
catttacaaaaaagcaatattaattgttttttatgatataaaatgctcta
tgaaatggaggatgacactatacctgggcatctatcccatgaagttgctg
aagatagcatcctatatgtagaattcattttatagaaacatagtggtcac
agatgatgagcaggagacattaaagttcctgtttaaattaaaagtgatct
aaacgacttgctttcagtatgattacaagaatcctcttttttcaaggaga
tgtactcatagtaggacattcacggggtatgaaacctaccctttaggcaa
ccttatgccagccagcagatggaaacccaacaactca
gaattccacataaaaccagagatactgaaacttatagaggagaaaatagg
gaaaagcctcaacgatatgggcacagggaaaaaattgctgaacagaacag
aaatggattgggctgtacgattgagaattgacaaatgggacctcataaaa
ttgcaaagtttctgtaaggcaaacactgtcaataagataaaaaggccacc
aacaaattgggaaaggatctttaccaatcctaaatcagataggggactaa
tatccaatatatacaaagaactcaagaagctggactccagaaaatcaaat
aaacctacttaaaaatggtgtacagagctcaacaaagaattcacaactga
ggaataccgaatggctgagaagcacctaaagaaatgttcaacatccttaa
tcattaggggaatgcaaatcaaaacaaccctgagattccacctcacacca
gtcagaatggctaagatcaaaaactcatgtgatagcagatgctggcgagg
atgtggagaaagaggaacactcctacattgttggtgggattgcaagcttg
tacaaccactctggaagtcagtttggcagttcctcagaaaattaaacata
gtattaccgaatgatccagcaataattctcctgggcatatacccagaaga
tgttccaacttgtaataaggacacctgctccactatgctcatagcagcct
tacttataatagccagaagtggaaagaacccagatgtccctcaatagagg
aatggatacagaaaatgtataccaaaaagtgcaaaaccttaacctattga
ctgtgtttatgggttttctctgcattatgactttttctcatggtttctca
gcttactgctatgtccaaaggcttgaacacattgcttatccataggcttt
ctctccacgatgtgttcttttatgttcatagataactgtgctgtgaacag
cttttaatcaacattgattacatttaaaatttttctccaatatgtattct
gttatgtatttggaagagaactatgatatctgtcaggaacagcaaaagaa
acttattctaagactggctttttcttatcactcttccattacctgagatg
aactaagtttcaagtccaaggtctagtgacctgtgttaccttaacaattc
ggccagttcatattcacggttttggttccacacctaaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65962566_65963762
seq2: B6Ng01-213A05.b_45_1231

seq1  GAATTCTATGGACATATAAATCACTCTAGATGAAGGGTCTCACCATAAAT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCTATGGACATATAAATCACTCTAGATAAAGGGTCTCACCATAAAT  50

seq1  TTTATCAAAATATGAGTAAAGATTATTTCAGTTCAATATCACACACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAAATATGAGTAAAGATTATTTCAGTTCAATATCACACACACAA  100

seq1  ACATGCACAGAAAACACATACACATTGTTCTTTACATCAGGCGTTGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAGAAAACACATACACATTGTTCTTTACATCAGGCGTTGAAGG  150

seq1  TCAGTGTCATTTTTCTCTCAAAATACTGTTTGCTGCGTTATTTTTAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTCATTTTTCTCTCAAAATACTGTTTGCTGCGTTATTTTTAAAAT  200

seq1  ATTATTTGGTAGTTTATTTTTGACATTGTCATTCAATTGCTCCTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGGTAGTTTATTTTTGACATTGTCATTCAATTGCTCCTTTTTTT  250

seq1  ATATTTGCTGTCTCCAAAACACCCTTTGTCCCACTCCCTGCACTCCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTGTCTCCAAAACACCCTTTGTCCCACTCCCTGCACTCCTAAA  300

seq1  ATGCACATGGCCTCTTATTTCATTAATTCTTACTGAATGTGCACATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACATGGCCTCTTATTTCATTAATTCTTACTGAATGTGCACATATTT  350

seq1  GCATATACATTTATATTTTTAAACAAAAATTGTAAAGACTGTGTAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACATTTATATTTTTAAACAAAAATTGTAAAGACTGTGTAAAATT  400

seq1  GCATATATTTATGTTTTAAAAGGCCACATAGCAGTAAAATCACTCTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTTATGTTTTAAAAGGCCACATAGCAGTAAAATCACTCTTAAT  450

seq1  GACATTCTGCTATTGATAAAAATCAGGGTCTTGATCAGCCACCATCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTGCTATTGATAAAAATCAGGGTCTTGATCAGCCACCATCTGAG  500

seq1  ATCTTTCCTTCTGTAATAGATAGAAACAAATACAAACACCCTTAGCCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCCTTCTGTAATAGATAGAAACAAATACAAACACCCTTAGCCAGT  550

seq1  CAGTTTTGAGAATGTCAAAGACTTTGGAACACACATTCATAAATAGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTGAGAATGTCAAAGACTTTGGAACACACATTCATAAATAGGCTG  600

seq1  TCTACATAAAATCCCTTGTATCAGGACTCAGGAAATATGGTGAAAGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTACATAAAATCCCTTGTATCAGGACTCAGGAAATATGGTGACAGTATA  650

seq1  GGTAGAAGTATATCAGTGCCAGAGGGGATTGAGAACACCCACCATGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGTATATCAGTGCCAGAGGGGATTGAGAACACCCACCATGGAAA  700

seq1  ACAGGACTTCTAAAACATGAAAGATAGATGCACATATGAAGTTACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTTCTAAAACATGAAAGATAGATGCACATATGAAGTTACAGAGA  750

seq1  ATGTGGCAGCATGCACAGGGACTGCATGGTTCTGTTGAAAATGGGTTCTC  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGTGGCAGCATGCACAGGGCCTGCATGGTTCTGTTGAAAATGGGTTCTC  800

seq1  AATAGTCAGAGGGGAATGAAGTACATCACCATTCCAATCCAGTTGATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCAGAGGGGAATGAAGTACATCACCATTCCAATCCAGTTGATAGT  850

seq1  CATTTACAAAAAAGCAATATTAATTGTTTTTTATGATATAAAATGCTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAAAAAGCAATATTAATTGTTTTTTATGATATAAAATGCTCTA  900

seq1  TGAAATGGAGGATGACACTATACCTGGGCATCTATCCCATGAAGTTGCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGAGGATGACACTATACCTGGGCATCTATCCCATGAAGTTGCTG  950

seq1  AAGATAGCATCCTATATGTAGAATTCATTTTATAGAAACATAGTGGTCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCATCCTATATGTAGAATTCATTTTATAGAAACATAGTGGTCAC  1000

seq1  AAGATGAATGAAGCAGGAGACATTAAAGTTCCTGTTTATATTAAAAGTGA  1050
       ||||| ||| ||||||||||||||||||||||||||| |||||||||||
seq2  -AGATG-ATG-AGCAGGAGACATTAAAGTTCCTGTTTAAATTAAAAGTGA  1047

seq1  TCTAAACGACTTGCTTTCAGGTATGATTTACAAGAAT-CTCTTTTTTCAA  1099
      ||||||||||||||||||| |||||| |||||||||| ||||||||||||
seq2  TCTAAACGACTTGCTTTCA-GTATGA-TTACAAGAATCCTCTTTTTTCAA  1095

seq1  -GAGATGTACTCAATAGTAGGACATTCACGGGGTATTGAAACTACTCTTA  1148
       ||||||||||| |||||||||||||||||||||||  || |||| ||| 
seq2  GGAGATGTACTC-ATAGTAGGACATTCACGGGGTATGAAACCTACCCTTT  1144

seq1  AGGGCAAACCTTATGCCCAGCAGCAGATGGGAAACACCAAACAAACTCA  1197
      |||   |||||||||||   ||||||||||   | ||| ||| ||||||
seq2  AGG--CAACCTTATGCCAGCCAGCAGATGG---AAACCCAAC-AACTCA  1187

seq1: chr13_66434301_66435228
seq2: B6Ng01-213A05.g_333_1253

seq1  CTCAAGAAGCTGGACTCCAGAAAATCAAATAAACCTACTTAAAAATGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAGCTGGACTCCAGAAAATCAAATAAACCTACTTAAAAATGGTG  50

seq1  TACAGAGCTCAACAAAGAATTCACAACTGAGGAATACCGAATGGCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCTCAACAAAGAATTCACAACTGAGGAATACCGAATGGCTGAGA  100

seq1  AGCACCTAAAGAAATGTTCAACATCCTTAATCATTAGGGGAATGCAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTAAAGAAATGTTCAACATCCTTAATCATTAGGGGAATGCAAATC  150

seq1  AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA  200

seq1  AAACTCATGTGATAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATGTGATAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC  250

seq1  TCCTACATTGTTGGTGGTATTGCAAACTTGTACAACCACTCTGGAAGTCA  300
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  TCCTACATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAGTCA  300

seq1  GTTTGGCAGTTCCTCAGAAAATTAAACATAGTATTACCGAATGATCCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAGTTCCTCAGAAAATTAAACATAGTATTACCGAATGATCCAGC  350

seq1  AATAACTCTCCTGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGG  400
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCTCCTGGGCATATACCCAGAAGATGTTCCAACTTGTAATAAGG  400

seq1  ACACCTGCTCCACTATGCTCATAGCAGCCTTACTTATAATAGCCAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCTCCACTATGCTCATAGCAGCCTTACTTATAATAGCCAGAAGT  450

seq1  GGAAAGAACCCAGATGTCCCTCAATAGAGGAATGGATACAGAAAATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACCCAGATGTCCCTCAATAGAGGAATGGATACAGAAAATGTAT  500

seq1  ACCAAAAAGTGCAAAACCTTAACCTATTGACTGTGTTTATGGGTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAGTGCAAAACCTTAACCTATTGACTGTGTTTATGGGTTTTCTC  550

seq1  TGCATTATGACTTTTTCTCATGGTTTCTCAGCTTACTGCTATGTCCAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATGACTTTTTCTCATGGTTTCTCAGCTTACTGCTATGTCCAAAG  600

seq1  GCTTGAACACATTGCTTATCCATAGGCTTTCTCTCCACGATGGGTTCTTT  650
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCTTGAACACATTGCTTATCCATAGGCTTTCTCTCCACGATGTGTTCTTT  650

seq1  TATGTTCATAGATAACTGTGCTGTGAACAGCTTTTAATC-ACATTGATTA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATGTTCATAGATAACTGTGCTGTGAACAGCTTTTAATCAACATTGATTA  700

seq1  CATTTAAGATTTTTCTCCAATATGTATTCTGTTATGTATTT-GAAGAGAA  748
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  CATTTAAAATTTTTCTCCAATATGTATTCTGTTATGTATTTGGAAGAGAA  750

seq1  CTATGATATCTAACTGTCAGGAACAAGCAAAAGAAACTTATCCTAAGGAC  798
      |||||||||    ||||||||||| |||||||||||||||| |||| |||
seq2  CTATGATAT----CTGTCAGGAAC-AGCAAAAGAAACTTATTCTAA-GAC  794

seq1  TGCTTTTTTCTTATCACTC-TCCATTTAACCTGAGGTTGAAACTAAG-TT  846
      ||  ||||||||||||||| ||||||  ||||||| |   ||||||| ||
seq2  TGGCTTTTTCTTATCACTCTTCCATT--ACCTGAGAT--GAACTAAGTTT  840

seq1  CAAGTCCCAAGTCCTAGTGACCTGTGT--ACTTAACAATATCCGGCCAGG  894
      ||||| |||||  ||||||||||||||   |||||||  || ||||||| 
seq2  CAAGT-CCAAGGTCTAGTGACCTGTGTTACCTTAACA--ATTCGGCCAG-  886

seq1  TTTCATTATTCACG--TTTTGTTCC-CACCTAAATGA  928
       |||| ||||||||  ||| ||||| |||||||||||
seq2  -TTCA-TATTCACGGTTTTGGTTCCACACCTAAATGA  921