BAC Information

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BAC

Clone NameB6Ng01-213H15
Chromosome13 (Build37)
Map Location 118,530,963 - 118,695,796
singlet/doubletdoublet
Overlap geneHcn1
Upstream geneParp8, LOC668288, LOC623312, Emb, EG623365, LOC382807
Downstream geneLOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213H15.bB6Ng01-213H15.g
ACCGA030994GA030995
length1,1311,055
definitionB6Ng01-213H15.b B6Ng01-213H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,530,963 - 118,532,231)(118,694,739 - 118,695,796)
sequence
gaattcattgcatatgaaataaagctagactttaatcacactatcatcca
cagagaagcttcaaatggcatatacacgaggcagctccctgggtgatttg
aaatgtaggggctgtaagaaagtgctgattttttttcagaacctctgtga
gctcgttgtgcttttgtttatttgtttaactaatattgcttgactttggt
ttagagtgagcaaatagagatttttttttaaaaaatcagatatcatttat
ttgatgtatattatttacaaaaccaaaagcaatgtagacagttacactga
cttcctagagcctactctgatccagacatatatagaattctgtcctcaga
aaagtgactctttgcttaatgctcagattctcagccagtgaaatgtcccc
taaactcattaggactcatttgtctttgtcagtaacaagctttcaagagc
tgggtcaacttggatggtttgtctctctgccactttgaatgaggccagtt
tacaggaaaaagaggaatttataatttgggatatatctaggggaattaca
taaatttaaatttttttacaaagttccaattacaaagaaaagtacatatt
aataaacattgtttaaaacaattggataaatccccatacatttacccttt
ccataaagaacttgactttgggtattgcatgtgagttcgaatgaatttaa
aaagattctgaccactttggctcaaggacagcaatttctgctggataatc
ttctaatactcagtttagaagtgtcttagaaccatatgttgtgataaaaa
tataacgtatatgccacgctgattatttaattcaagggtagagtttgtct
cattccaagaatagatgacggctagagtgcatatacttaaagccatactc
cataaatatcatttccttccatcaagggtttttttttttcctttcagaaa
actgaatgtaaatgattgctaagttagaactatgtggcttatgctttgca
gcagaaagcatcaatagaaggattttaatggctgaaagacacagtgtagt
gtctacggagtaaatataaaatgttcatcttaaagctgatcaagtgttta
gactcactggagtctctctctctctctttct

gaattctttgacaaaaaaagttagtttcgagacttgaacaatatgcatga
gccaattacttgttaaaggtttccaacaagtagtctctaacataaaggga
agataaatcttctaactcttgctatgactgaatatttgttcaaaacatgt
ttgaaatttttaggctcgtattttatttcaataatgacttttgttattgt
tctcatttgatgtctattgctatgataaaatactctgacccaaagtgact
tggggtataaatgggtttatttggcttataatttcaagtaaaagcccaat
gttccggaagtcaggtaagaacttgatgaagaaaccatgaagcaatgctg
cttgttggcttacgcccaggctcattctgaggagtacttgcatagagatg
taactgtccacagtgggctgggtcaggttatattatttaataactaagct
atgcctatgggcttatcttatctagacaactcctcagcagaagtttttct
ctcatatgactctctattcagtgttaaattgacacatcaggctaaggagg
acagttattgttcttccatattccttttactgacccttcaaatactcatg
aaaacatccagtctttattttttgtgttattctttttgtgttgtcagaga
aatatttttccccattttatagggatagcaaatggttccatttctaggaa
atgtaattttataaagcagccatgatttggagtcaggattttattcatga
ttattataaagaagatcatctattcagtaaacattttatgagttcttgat
acatcctgatcattagagatacaaatgcaattatgactcacgttgtctag
ttaaaggcttgcagtcatgaaagagacaataaattcacaaatgataatta
ttgcagggacacaagtagtcatgaaaacaattattcatgggaagacggaa
tgcctggtaagaacaagtaatggaaggaaaactaagatgtataaaatatt
ggggatgaacagcataaagaaaggataagtaatcagaacttaaaaaagta
gatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118530963_118532231
seq2: B6Ng01-213H15.b_42_1172

seq1  GAATTCATTGCATATGAAATAAAGCTAGACTTTAATCACACTATCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCATATGAAATAAAGCTAGACTTTAATCACACTATCATCCA  50

seq1  CAGAGAAGCTTCAAATGGCATATACACGAGGCAGCTCCCTGGGTGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCTTCAAATGGCATATACACGAGGCAGCTCCCTGGGTGATTTG  100

seq1  AAATGTAGGGGCTGTAAGAAAGTGCTGATTTTTTTTCAGAACCTCTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGGGGCTGTAAGAAAGTGCTGATTTTTTTTCAGAACCTCTGTGA  150

seq1  GCTCGTTGTGCTTTTGTTTATTTGTTTAACTAATATTGCTTGACTTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTTGTGCTTTTGTTTATTTGTTTAACTAATATTGCTTGACTTTGGT  200

seq1  TTAGAGTGAGCAAATAGAGATTTTTTTTTAAAAAATCAGATATCATTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTGAGCAAATAGAGATTTTTTTTTAAAAAATCAGATATCATTTAT  250

seq1  TTGATGTATATTATTTACAAAACCAAAAGCAATGTAGACAGTTACACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATATTATTTACAAAACCAAAAGCAATGTAGACAGTTACACTGA  300

seq1  CTTCCTAGAGCCTACTCTGATCCAGACATATATAGAATTCTGTCCTCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGAGCCTACTCTGATCCAGACATATATAGAATTCTGTCCTCAGA  350

seq1  AAAGTGACTCTTTGCTTAATGCTCAGATTCTCAGCCAGTGAAATGTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACTCTTTGCTTAATGCTCAGATTCTCAGCCAGTGAAATGTCCCC  400

seq1  TAAACTCATTAGGACTCATTTGTCTTTGTCAGTAACAAGCTTTCAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCATTAGGACTCATTTGTCTTTGTCAGTAACAAGCTTTCAAGAGC  450

seq1  TGGGTCAACTTGGATGGTTTGTCTCTCTGCCACTTTGAATGAGGCCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCAACTTGGATGGTTTGTCTCTCTGCCACTTTGAATGAGGCCAGTT  500

seq1  TACAGGAAAAAGAGGAATTTATAATTTGGGATATATCTAGGGGAATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAAAAGAGGAATTTATAATTTGGGATATATCTAGGGGAATTACA  550

seq1  TAAATTTAAATTTTTTTACAAAGTTCCAATTACAAAGAAAAGTACATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAATTTTTTTACAAAGTTCCAATTACAAAGAAAAGTACATATT  600

seq1  AATAAACATTGTTTAAAACAATTGGATAAATCCCCATACATTTACCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATTGTTTAAAACAATTGGATAAATCCCCATACATTTACCCTTT  650

seq1  CCATAAAGAACTTGACTTTGGGTATTGCATGTGAGTTCGAATGAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGAACTTGACTTTGGGTATTGCATGTGAGTTCGAATGAATTTAA  700

seq1  AAAGATTCTGACCACTTTGGCTCAAGGACAGCAATTTCTGCTGGATAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTGACCACTTTGGCTCAAGGACAGCAATTTCTGCTGGATAATC  750

seq1  TTCTAATACTCAGTTTAGAAGTGTCTTAGAACCATATGTTGTGATAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATACTCAGTTTAGAAGTGTCTTAGAACCATATGTTGTGATAAAAA  800

seq1  TATAACGTATATGCCACGCTGATTATTTAATTCAAGGGTAGAGTTTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACGTATATGCCACGCTGATTATTTAATTCAAGGGTAGAGTTTGTCT  850

seq1  CATTCCAAGAATAGATGACGGCTAGAGTGCATATACTTAAAGCCATACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAAGAATAGATGACGGCTAGAGTGCATATACTTAAAGCCATACTC  900

seq1  CATAAATATCATTTCCTTCCATCAAGG--TTTTTTTTTTCCTTTCAGAAA  948
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  CATAAATATCATTTCCTTCCATCAAGGGTTTTTTTTTTTCCTTTCAGAAA  950

seq1  ACTGAATGTAAATGATTGCTAAGTTAGAACTATGTGGC-TATGCTTTGCA  997
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ACTGAATGTAAATGATTGCTAAGTTAGAACTATGTGGCTTATGCTTTGCA  1000

seq1  GCAGAAAGCATCAATAGAAGGATTTTAATGGTTGAAAGACACAGTGTAGT  1047
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAGAAAGCATCAATAGAAGGATTTTAATGGCTGAAAGACACAGTGTAGT  1050

seq1  GTCTACGGAGTAAAATAATTAAAATGTTCATCTAAAAGGCTGATCAAGTG  1097
      ||||||||||| |||||  |||||||||||||| ||| ||||||||||||
seq2  GTCTACGGAGT-AAATA--TAAAATGTTCATCTTAAA-GCTGATCAAGTG  1096

seq1  TTTAGAACTCACTTGAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  1147
      ||||| ||||||| |||||||||||||||||| |||              
seq2  TTTAG-ACTCACTGGAGTCTCTCTCTCTCTCTTTCT--------------  1131

seq1  CTCTCTCCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCTTGCTTTTG  1197
                                                        
seq2  --------------------------------------------------  1131

seq1  GATTGACTTCTTTTCTCCCTCTCTCCCTCCCTTCCTCTCTCTCTCTCTCT  1247
                                                        
seq2  --------------------------------------------------  1131

seq1  CTCTCTCTCTCTCTCTCTTTCT  1269
                            
seq2  ----------------------  1131


seq1: chr13_118694739_118695796
seq2: B6Ng01-213H15.g_69_1123 (reverse)

seq1  TGATCTACTTTTTTTAGTTCTGATTACCTTATCCTTTCTTTATGCTGTTC  50
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  TGATCTACTTTTTTAAGTTCTGATTA-CTTATCCTTTCTTTATGCTGTTC  49

seq1  ATTCCCCAATATTTTATACATCTTAGTTTTCCTTCCATTACTTGTTCTTA  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TCCCCAATATTTTATACATCTTAGTTTTCCTTCCATTACTTGTTCTTA  98

seq1  CCAGGCATTCCGTCTT-CCATGAATAATTGTTTTCATGACTACTTTGTGT  149
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  CCAGGCATTCCGTCTTCCCATGAATAATTGTTTTCATGACTAC-TTGTGT  147

seq1  CCCTGCAATAATTATCATTTGTGAATTTATTGTCTCTTTCATGACTGCAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAATAATTATCATTTGTGAATTTATTGTCTCTTTCATGACTGCAA  197

seq1  GCCTTTTAACTAGACAACCTGAGTCATAATTGCATTTGTATCTCTAATGA  249
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCC-TTTAACTAGACAACGTGAGTCATAATTGCATTTGTATCTCTAATGA  246

seq1  TCAGGATGTATCAAGAACTCATAAAATGTTTACTGAATAGATGATCTTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGTATCAAGAACTCATAAAATGTTTACTGAATAGATGATCTTCT  296

seq1  TTATAATAATCATGAATAAAATCCTGACTCCAAATCATGGCTGCTTTATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATAATCATGAATAAAATCCTGACTCCAAATCATGGCTGCTTTATA  346

seq1  AAATTACATTTCCTAGAAATGGAACCATTTGCTATCCCTATAAAATGGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATTTCCTAGAAATGGAACCATTTGCTATCCCTATAAAATGGGG  396

seq1  AAAAATATTTCTCTGACAACACAAAAAGAATAACACAAAAAATAAAGACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTCTCTGACAACACAAAAAGAATAACACAAAAAATAAAGACT  446

seq1  GGATGTTTTCATGAGTATTTGAAGGGTCAGTAAAAGGAATATGGAAGAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTTTCATGAGTATTTGAAGGGTCAGTAAAAGGAATATGGAAGAAC  496

seq1  AATAACTGTCCTCCTTAGCCTGATGTGTCAATTTAACACTGAATAGAGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGTCCTCCTTAGCCTGATGTGTCAATTTAACACTGAATAGAGAG  546

seq1  TCATATGAGAGAAAAACTTCTGCTGAGGAGTTGTCTAGATAAGATAAGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAGAGAAAAACTTCTGCTGAGGAGTTGTCTAGATAAGATAAGCC  596

seq1  CATAGGCATAGCTTAGTTATTAAATAATATAACCTGACCCAGCCCACTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGCATAGCTTAGTTATTAAATAATATAACCTGACCCAGCCCACTGT  646

seq1  GGACAGTTACATCTCTATGCAAGTACTCCTCAGAATGAGCCTGGGCGTAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTACATCTCTATGCAAGTACTCCTCAGAATGAGCCTGGGCGTAA  696

seq1  GCCAACAAGCAGCATTGCTTCATGGTTTCTTCATCAAGTTCTTACCTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAGCAGCATTGCTTCATGGTTTCTTCATCAAGTTCTTACCTGAC  746

seq1  TTCCGGAACATTGGGCTTTTACTTGAAATTATAAGCCAAATAAACCCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGAACATTGGGCTTTTACTTGAAATTATAAGCCAAATAAACCCATT  796

seq1  TATACCCCAAGTCACTTTGGGTCAGAGTATTTTATCATAGCAATAGACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCCAAGTCACTTTGGGTCAGAGTATTTTATCATAGCAATAGACAT  846

seq1  CAAATGAGAACAATAACAAAAGTCATTATTGAAATAAAATACGAGCCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGAACAATAACAAAAGTCATTATTGAAATAAAATACGAGCCTAA  896

seq1  AAATTTCAAACATGTTTTGAACAAATATTCAGTCATAGCAAGAGTTAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAAACATGTTTTGAACAAATATTCAGTCATAGCAAGAGTTAGAA  946

seq1  GATTTATCTTCCCTTTATGTTAGAGACTACTTGTTGGAAACCTTTAACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATCTTCCCTTTATGTTAGAGACTACTTGTTGGAAACCTTTAACAA  996

seq1  GTAATTGGCTCATGCATATTGTTCAAGTCTCGAAACTAACTTTTTTTGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGGCTCATGCATATTGTTCAAGTCTCGAAACTAACTTTTTTTGTC  1046

seq1  AAAGAATTC  1058
      |||||||||
seq2  AAAGAATTC  1055


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