BAC Information

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BAC

Clone NameB6Ng01-214F10
Chromosome13 (Build37)
Map Location 72,379,771 - 72,380,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627230, LOC100042360, Irx1
Downstream geneLOC100042828, LOC100042832, LOC100042836, Irx2, LOC621486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214F10.bB6Ng01-214F10.g
ACCGA031614GA031615
length1,1721,104
definitionB6Ng01-214F10.b B6Ng01-214F10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatatcgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaatttcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactccttcattgttggtg
ggattgcaagtttgtacaaccactctggaaatctgtctggcggttcctca
gaaaattggacatagtactaccggaggatcccgaaatacctttcctgggc
atatatccagaaggtgtcccaactggtaagaaggacacctgcatgctatg
ttcatagcagccttatttataatagccagaagctggaaagaacccagatg
cccctcaacagaggaatggatacaaaaattgtggtacatttacacaatgg
agtactactcagctataaaaaagaatgaatttatgaaattcctaggcaaa
tggttggacctggagggcatcatcctgagtgaggtaacacaatcacaaaa
gaactcaaatgatatgtactcactgataagtgaatattagcccagaaact
cggtatacctgagatataagagacaatttgtaaaacacatgaaactgaag
aggaacgaaggccaaagtgtggacaccttgcccttcttagaattggaaac
aatcaccaagttgttacagagacaaagtttcgagctgagacaaaaggatg
gaccatctagagactgccatatccaggaatccatcccataattagcctcc
aaacgatgacaccattgcatacactagcaagagtttgctgaaaggaccca
gatatagcttctctcttgtgagacttggccggcgcctagcaaacacataa
gtggatgctcacagtcagctattggatggattacagtgcccccaatggag
agctagagaaaagtatccaaggagtaaagagttctgcaaccgtgtagttc
cacattatgaacaatcagtacccggagctcttgtctctagctgcaaatgt
atcaaaagatgggcctagtagccatcacttgaaagagaagccctactgga
acaggccaccttttattgcctcaattcagggaagcctagggatcaaaata
agtgtgaatgcgttggtacgag

gaattctatgtcaagagaacatccttgttagtctaactttgaagccatac
actctggcatctacttcgtagcgtctactctttccaaacacagcatgtac
tctccccaaagcccatctttggaagcccagaggaaaaatttcccccaagg
aacagccttgagtctaaagattatggaagggatttcatttcttcctgtgg
ttaagtgtgcacacggacagacttagagcagaagggagagacagaacata
aagcctggtgacacagcagtggaacaactgccctacattcagtgacagaa
gacatatgggcttcggaaaatccatttaaatctcaagccgcaccagcaga
aggtggtaattagacctggcaaagaagtcgttcaatggaggttggaggat
gaggaggatgaagcatcttcagacagatttcatggtcaccacgatgtaaa
ggtgacaccaatggctggtctggctgtagtgactgtcctcagtgtgacct
agtactaacttctgtgtctttctacatctcacagtgccccttcgagatgg
tacgtctatgtttccaggggctggcactcatgatgcaaatagagatcaga
agtgctggcaaaggactttgtgaccccctccccacaatgtgaccctggga
tgctgacactattgccttccagccagtgtcacccagttggactgtgaaat
gtttgactgagatgagcagagtcaaagccttcacatttgactgcagtatc
tatgcactgagtaaaggaaaatgcaagtttctccacaagaatgaggagaa
aagacttaggggaaatgaggatttctagtcttcatcttgggttccactac
tacctgcctctcatgagcttcagaacttcactgtttgcttacccagcttt
ttacttttgtgtatagaactgagaacaggggggactaattttatccccta
ctattccacaagttgcagagaaaacatctcactaagacctagggctgtaa
gtttcagcttgatatttgtgctctgaaggcctttgaaaagagggtttctc
tttcccgaaagacagctctacctctggaaatgggttttcaaagaatttaa
ttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_72379771_72380849
seq2: B6Ng01-214F10.g_66_1169 (reverse)

seq1  CCAA-TAAATTCTCTGGAAAACCATTT-CAGA-GTAGAGCTGTC-TTCGT  46
      |||| |||||||| || ||| |||||| |||| ||||||||||| |||| 
seq2  CCAATTAAATTCTTTGAAAACCCATTTCCAGAGGTAGAGCTGTCTTTCGG  50

seq1  GAAAG-GAAACCCTC-TTTCAAAGG-CTTCAG---ACACATATCTAGCTG  90
      ||||| ||||||||| ||||||||| ||||||   ||| ||||| |||||
seq2  GAAAGAGAAACCCTCTTTTCAAAGGCCTTCAGAGCACAAATATCAAGCTG  100

seq1  AAAACTACAGCCCTA-GTCTT-GTGAGAT-TTTTCTCTGCAACTTGTGGA  137
      |||  |||||||||| ||||| ||||||| ||||||||||||||||||||
seq2  AAACTTACAGCCCTAGGTCTTAGTGAGATGTTTTCTCTGCAACTTGTGGA  150

seq1  ATAGTTGGGGAT-AAATTTGT-CCCCCTG-TCTCAGTTCTATACAC-AAA  183
      ||||| |||||| ||||| || ||||||| |||||||||||||||| |||
seq2  ATAGTAGGGGATAAAATTAGTCCCCCCTGTTCTCAGTTCTATACACAAAA  200

seq1  GT-AAAAGCTGGGTAAGC-AACAGTG-AGTTCTG-AGCTCATG-GAGGCA  228
      || ||||||||||||||| ||||||| ||||||| |||||||| ||||||
seq2  GTAAAAAGCTGGGTAAGCAAACAGTGAAGTTCTGAAGCTCATGAGAGGCA  250

seq1  GGTAGTAGTGGAA-CCAAGATGAAGACTAG-AATCCTCATTTCCCCTAAG  276
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  GGTAGTAGTGGAACCCAAGATGAAGACTAGAAATCCTCATTTCCCCTAAG  300

seq1  TCTTTTCTCCTCATTCTTGTGGAG-AACTTGCATTTTCCTTTACTCAGTG  325
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTTTTCTCCTCATTCTTGTGGAGAAACTTGCATTTTCCTTTACTCAGTG  350

seq1  CATAGATACTGCAGTCAAATGTGAAGGCTTTGACTCTGCTCATCTCAGTC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATACTGCAGTCAAATGTGAAGGCTTTGACTCTGCTCATCTCAGTC  400

seq1  AAACATTTCACAGTCCAACTGGGTGACACTGGCTGGAAGGCAATAGTGTC  425
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCACAGTCCAACTGGGTGACACTGGCTGGAAGGCAATAGTGTC  450

seq1  AGCATCCCAGGGTCACATTGTGGGGAGGGGGTCACAAAGTCCTTTGCCAG  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCCAGGGTCACATTGTGGGGAGGGGGTCACAAAGTCCTTTGCCAG  500

seq1  CACTTCTGATCTCTATTTGCATCATGAGTGCCAGCCCCTGGAAACATAGA  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGATCTCTATTTGCATCATGAGTGCCAGCCCCTGGAAACATAGA  550

seq1  CGTACCATCTCGAAGGGGCACTGTGAGATGTAGAAAGACACAGAAGTTAG  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACCATCTCGAAGGGGCACTGTGAGATGTAGAAAGACACAGAAGTTAG  600

seq1  TACTAGGTCACACTGAGGACAGTCACTACAGCCAGACCAGCCATTGGTGT  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTCACACTGAGGACAGTCACTACAGCCAGACCAGCCATTGGTGT  650

seq1  CACCTTTACATCGTGGTGACCATGAAATCTGTCTGAAGATGCTTCATCCT  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTACATCGTGGTGACCATGAAATCTGTCTGAAGATGCTTCATCCT  700

seq1  CCTCATCCTCCAACCTCCATTGAACGACTTCTTTGCCAGGTCTAATTACC  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCTCCAACCTCCATTGAACGACTTCTTTGCCAGGTCTAATTACC  750

seq1  ACCTTCTGCTGGTGCGGCTTGAGATTTAAATGGATTTTCCGAAGCCCATA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGCTGGTGCGGCTTGAGATTTAAATGGATTTTCCGAAGCCCATA  800

seq1  TGTCTTCTGTCACTGAATGTAGGGCAGTTGTTCCACTGCTGTGTCACCAG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTGTCACTGAATGTAGGGCAGTTGTTCCACTGCTGTGTCACCAG  850

seq1  GCTTTATGTTCTGTCTCTCCCTTCTGCTCTAAGTCTGTCCGTGTGCACAC  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGTTCTGTCTCTCCCTTCTGCTCTAAGTCTGTCCGTGTGCACAC  900

seq1  TTAACCACAGGAAGAAATGAAATCCCTTCCATAATCTTTAGACTCAAGGC  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCACAGGAAGAAATGAAATCCCTTCCATAATCTTTAGACTCAAGGC  950

seq1  TGTTCCTTGGGGGAAATTTTTCCTCTGGGCTTCCAAAGATGGGCTTTGGG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTGGGGGAAATTTTTCCTCTGGGCTTCCAAAGATGGGCTTTGGG  1000

seq1  GAGAGTACATGCTGTGTTTGGAAAGAGTAGACGCTACGAAGTAGATGCCA  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTACATGCTGTGTTTGGAAAGAGTAGACGCTACGAAGTAGATGCCA  1050

seq1  GAGTGTATGGCTTCAAAGTTAGACTAACAAGGATGTTCTCTTGACATAGA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTATGGCTTCAAAGTTAGACTAACAAGGATGTTCTCTTGACATAGA  1100

seq1  ATTC  1079
      ||||
seq2  ATTC  1104


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