BAC Information

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BAC

Clone NameB6Ng01-214N14
Chromosome13 (Build37)
Map Location 109,543,375 - 109,646,825
singlet/doubletdoublet
Overlap genePde4d
Upstream geneZswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214N14.bB6Ng01-214N14.g
ACCGA031987GA031988
length1,1281,098
definitionB6Ng01-214N14.b B6Ng01-214N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,543,375 - 109,544,507)(109,645,732 - 109,646,825)
sequence
gaattcatgaattattccgtttagctgctctgagtatagtttttggactc
tacatctctttggagatctgatgagagtaacttgcaactctgttcaggag
catgagcatctctccacagaaataaatcctgccctagaatttcaacagga
atctagatacacagcctcttcctggtctagcttctcatgtaggagactgc
aggatctgggatacactctacctaaggcaggactagattggaatgtgttt
gtctttgccatcaattgtctgttcaggagacatggcgtcactatgccact
ccagtcttgagttcactgtggtttgttctaagtactaagtctgtgtaagc
ttccctgtatacaggaagaacaccctgccctttcgttacatgtagtaacc
gcaccattagtgattgaccctgcggattcagccctgtctccacagccttt
catcctggcaaagttagtttcctttgattggaaaggtgaatggtagcacc
tatagatgagtcaatacttcattcagaatctagaattcaatagtttctcc
gattctccgatttcattgtgttcaaggtgattaggtttttgctttgacaa
tttgtttttcttcttccagttgtctggctatttcctttggcaccttggta
ctgatgaagacagcagggacagaggttgacctctgtctgtctattatgga
atcattaattgagctgattcccatggtagttcctagcttgcatggcatgt
aaagtttggggctacaaaagccacaggtttcttgacatcagaagcgtctg
taaacaagaacaacaaaacaccttcctcagaagtgaaaggagagacgatg
gacaggagcaatagacacaccagagtcagtctttcactgtgagtgagtga
gtgagaaaaatcctcgtcttgtcagaaagtcccacagagcatcataaact
gcttcagacagcacatcctgcagataggagaattctctggtacataaaac
ctcaatcatagatcgagaaacagctgtctgatatataccacattgtgctg
tagccatccacatgtcatctctgcagaggtctaaactaaaactagaactg
gattccacactgagttaaagggattatg

gaattcattgtccagactcaaacttgatcaccctgtggccatagtttgta
tttttttatatccccataccactctggtgttgctatcatggaccaatgcc
atttaattattaacagagagtaatcagcacaaatatcagatctatgcaca
caccaaagaatgtttgaaaaaaatatatatacatatatatatatatatat
atatatatatatatatatatataatttctttctttctcccagggatgcag
ttatctgagtctctacaaattcctcccttagcaaagacaagacaagacaa
tgtgtttctccctctaggcaagatacacaaatgaaaaccagaaggcctca
ctggcacatatgttgtcattatgacagaagctttcatataaaagtcaatg
ggaaagaaggaagagtccacccctgcagggaatagacttcagaaatacaa
gtcaacgagaagcagattagaaaagctaagatagacactgagagcaggag
cctaaaccacctggataaactgtgcagctttggagcaaggatcaagatga
gtcttttcaggagattaaaggctaagtgtcgaacactctaaagtgctcat
tagaaaaataattttaatatctaccattacattgacacatgaagctgtaa
gatattgggaaaggtgccatctcttttaccctttgcttgatgtgtgcttc
gttgtaaagtagagaaaatagttttgtcccaacctaccccaaagggttgt
tgtagggattaattagctaatatccaaacatttctgaagagtttcctcca
aacataattctgcacattttaaacagaaaacgtaggtttcagctgccctc
aatatcaggaaagctactgggtttgtgtcaggcacttaagatgatttcct
tttcttctccttttgtgggaacaggatcttttttatttttttttcttttc
tttttctagagtaatataagtgactgggttgaatcataaaatcacttcac
agacatttaaataaacacactggagttccaacttggcacttcactgaaat
aaatccgtcatataacaccaaagtcttctcttcatttagggcaagtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_109543375_109544507
seq2: B6Ng01-214N14.b_48_1175

seq1  GAATTCATGAATTATTCCGTTTAGCTGCTCTGAGTATAGTTTTTGGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATTATTCCGTTTAGCTGCTCTGAGTATAGTTTTTGGACTC  50

seq1  TACATCTCTTTGGAGATCTGATGAGAGTAACTTGCAACTCTGTTCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTCTTTGGAGATCTGATGAGAGTAACTTGCAACTCTGTTCAGGAG  100

seq1  CATGAGCATCTCTCCACAGAAATAAATCCTGCCCTAGAATTTCAACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCATCTCTCCACAGAAATAAATCCTGCCCTAGAATTTCAACAGGA  150

seq1  ATCTAGATACACAGCCTCTTCCTGGTCTAGCTTCTCATGTAGGAGACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATACACAGCCTCTTCCTGGTCTAGCTTCTCATGTAGGAGACTGC  200

seq1  AGGATCTGGGATACACTCTACCTAAGGCAGGACTAGATTGGAATGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGGGATACACTCTACCTAAGGCAGGACTAGATTGGAATGTGTTT  250

seq1  GTCTTTGCCATCAATTGTCTGTTCAGGAGACATGGCGTCACTATGCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGCCATCAATTGTCTGTTCAGGAGACATGGCGTCACTATGCCACT  300

seq1  CCAGTCTTGAGTTCACTGTGGTTTGTTCTAAGTACTAAGTCTGTGTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTGAGTTCACTGTGGTTTGTTCTAAGTACTAAGTCTGTGTAAGC  350

seq1  TTCCCTGTATACAGGAAGAACACCCTGCCCTTTCGTTACATGTAGTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTATACAGGAAGAACACCCTGCCCTTTCGTTACATGTAGTAACC  400

seq1  GCACCATTAGTGATTGACCCTGCGGATTCAGCCCTGTCTCCACAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATTAGTGATTGACCCTGCGGATTCAGCCCTGTCTCCACAGCCTTT  450

seq1  CATCCTGGCAAAGTTAGTTTCCTTTGATTGGAAAGGTGAATGGTAGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGCAAAGTTAGTTTCCTTTGATTGGAAAGGTGAATGGTAGCACC  500

seq1  TATAGATGAGTCAATACTTCATTCAGAATCTAGAATTCAATAGTTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATGAGTCAATACTTCATTCAGAATCTAGAATTCAATAGTTTCTCC  550

seq1  GATTCTCCGATTTCATTGTGTTCAAGGTGATTAGGTTTTTGCTTTGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCGATTTCATTGTGTTCAAGGTGATTAGGTTTTTGCTTTGACAA  600

seq1  TTTGTTTTTCTTCTTCCAGTTGTCTGGCTATTTCCTTTGGCACCTTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCTTCTTCCAGTTGTCTGGCTATTTCCTTTGGCACCTTGGTA  650

seq1  CTGATGAAGACAGCAGGGACAGAGGTTGACCTCTGTCTGTCTATTATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAAGACAGCAGGGACAGAGGTTGACCTCTGTCTGTCTATTATGGA  700

seq1  ATCATTAATTGAGCTGATTCCCATGGTAGTTCCTAGCTTGCATGGCATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAATTGAGCTGATTCCCATGGTAGTTCCTAGCTTGCATGGCATGT  750

seq1  AAAGTTTGGGGCTACAAAAGCCACAGGTTTCTTGACATCAGAAGCGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGGGGCTACAAAAGCCACAGGTTTCTTGACATCAGAAGCGTCTG  800

seq1  TAAACAAGAACAACAAAACACCTTCCTCAGAAGTGAAAGGAGAGACGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGAACAACAAAACACCTTCCTCAGAAGTGAAAGGAGAGACGATG  850

seq1  GACAGGAGCAATAGACACACCAGAGTCAGTCTTTCACTGTGAGTGAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGCAATAGACACACCAGAGTCAGTCTTTCACTGTGAGTGAGTGA  900

seq1  GTGAGAAAAATCCTCGTCTTGTCAGAAAGTCCCACAGAGCATCATAAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAAAAATCCTCGTCTTGTCAGAAAGTCCCACAGAGCATCATAAACT  950

seq1  GCTTCAGACAGCACATCCTGCAGATAGGAGAATTCTCTTGGTACAATAAA  1000
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  GCTTCAGACAGCACATCCTGCAGATAGGAGAATTCTC-TGGTAC-ATAAA  998

seq1  ACCTCAATCATAGATCGAGAAACAGCTGTCTGATATATA-CACATTGTGC  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACCTCAATCATAGATCGAGAAACAGCTGTCTGATATATACCACATTGTGC  1048

seq1  TGTTAAGCCATCCACAATGTCATCTCTGCAGAGGTTCTAAACTAAAACTA  1099
      |||  |||||||||| |||||||||||||||||| |||||||||||||||
seq2  TGT--AGCCATCCAC-ATGTCATCTCTGCAGAGG-TCTAAACTAAAACTA  1094

seq1  GAACTGGATCCCCACACTGAG-TAAAGGGATTATG  1133
      |||||||||  |||||||||| |||||||||||||
seq2  GAACTGGAT-TCCACACTGAGTTAAAGGGATTATG  1128


seq1: chr13_109645732_109646825
seq2: B6Ng01-214N14.g_66_1163 (reverse)

seq1  CTAC-TGCCCTAAATGA--AGAAGGCTTT-GTGTTATATGACGGATTTAT  46
      |||| ||||||||||||  ||||| |||| ||||||||||||||||||||
seq2  CTACTTGCCCTAAATGAAGAGAAGACTTTGGTGTTATATGACGGATTTAT  50

seq1  TTCAGTG-AGTGGCAAGTTGGAACT-CAGTGGTGTTTTATTTTAATGTCT  94
      ||||||| |||| |||||||||||| |||| ||| ||||||| |||||||
seq2  TTCAGTGAAGTGCCAAGTTGGAACTCCAGT-GTG-TTTATTTAAATGTCT  98

seq1  GTGAAGTGGTTTTATGATTCAA-CCAGTCAC-TATATTACTCTAGAAAAG  142
      |||||||| ||||||||||||| |||||||| ||||||||||||||||| 
seq2  GTGAAGTGATTTTATGATTCAACCCAGTCACTTATATTACTCTAGAAAAA  148

seq1  GAAAAGAAAAAAAAATAAAAAAGGTCCTGTT-CCACAAAAGGAGAAGAAA  191
      ||||||||||||||||||||||| ||||||| ||||||||||||||||||
seq2  GAAAAGAAAAAAAAATAAAAAAGATCCTGTTCCCACAAAAGGAGAAGAAA  198

seq1  AGGAAATTCATCTTAAGTGCCTGACACAAACCCAGTAGCTTTCCTGATAT  241
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGAAA-TCATCTTAAGTGCCTGACACAAACCCAGTAGCTTTCCTGATA-  246

seq1  TTGAGGGCAGCTGGAACCTACGTTTTCTGTTT-AAATGTGCAGAATTATG  290
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TTGAGGGCAGCTGAAACCTACGTTTTCTGTTTAAAATGTGCAGAATTATG  296

seq1  TTTGGAGGAAACTCTTCAGAAATGTTTGGATATTAGCTAATTAATCCCTA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAAACTCTTCAGAAATGTTTGGATATTAGCTAATTAATCCCTA  346

seq1  CAACAACCCTTTGGGGTAGGTTGGGACAAAACTATTTTCTCTACTTTACA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAACCCTTTGGGGTAGGTTGGGACAAAACTATTTTCTCTACTTTACA  396

seq1  ACGAAGCACACATCAAGCAAAGGGTAAAAGAGATGGCACCTTTCCCAATA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCACACATCAAGCAAAGGGTAAAAGAGATGGCACCTTTCCCAATA  446

seq1  TCTTACAGCTTCATGTGTCAATGTAATGGTAGATATTAAAATTATTTTTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGCTTCATGTGTCAATGTAATGGTAGATATTAAAATTATTTTTC  496

seq1  TAATGAGCACTTTAGAGTGTTCGACACTTAGCCTTTAATCTCCTGAAAAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGCACTTTAGAGTGTTCGACACTTAGCCTTTAATCTCCTGAAAAG  546

seq1  ACTCATCTTGATCCTTGCTCCAAAGCTGCACAGTTTATCCAGGTGGTTTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCTTGATCCTTGCTCCAAAGCTGCACAGTTTATCCAGGTGGTTTA  596

seq1  GGCTCCTGCTCTCAGTGTCTATCTTAGCTTTTCTAATCTGCTTCTCGTTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTGCTCTCAGTGTCTATCTTAGCTTTTCTAATCTGCTTCTCGTTG  646

seq1  ACTTGTATTTCTGAAGTCTATTCCCTGCAGGGGTGGACTCTTCCTTCTTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTATTTCTGAAGTCTATTCCCTGCAGGGGTGGACTCTTCCTTCTTT  696

seq1  CCCATTGACTTTTATATGAAAGCTTCTGTCATAATGACAACATATGTGCC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGACTTTTATATGAAAGCTTCTGTCATAATGACAACATATGTGCC  746

seq1  AGTGAGGCCTTCTGGTTTTCATTTGTGTATCTTGCCTAGAGGGAGAAACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGCCTTCTGGTTTTCATTTGTGTATCTTGCCTAGAGGGAGAAACA  796

seq1  CATTGTCTTGTCTTGTCTTTGCTAAGGGAGGAATTTGTAGAGACTCAGAT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCTTGTCTTGTCTTTGCTAAGGGAGGAATTTGTAGAGACTCAGAT  846

seq1  AACTGCATCCCTGGGAGAAAGAAAGAAATTATATATATATATATATATAT  890
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  AACTGCATCCCTGGGAGAAAGAAAGAAAT--TATATATATATATATATAT  894

seq1  ATATATATATATATATATATATGTATATATATTTTTTTCAAACATTCTTT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATGTATATATATTTTTTTCAAACATTCTTT  944

seq1  GGTGTGTGCATAGATCTGATATTTGTGCTGATTACTCTCTGTTAATAATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGCATAGATCTGATATTTGTGCTGATTACTCTCTGTTAATAATT  994

seq1  AAATGGCATTGGTCCATGATAGCAACACCAGAGTGGTATGGGGATATAAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCATTGGTCCATGATAGCAACACCAGAGTGGTATGGGGATATAAA  1044

seq1  AAAATACAAACTATGGCCACAGGGTGATCAAGTTTGAGTCTGGACAATGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAAACTATGGCCACAGGGTGATCAAGTTTGAGTCTGGACAATGA  1094

seq1  ATTC  1094
      ||||
seq2  ATTC  1098


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