BAC Information

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BAC

Clone NameB6Ng01-215H22
Chromosome13 (Build37)
Map Location 116,072,383 - 116,206,317
singlet/doubletdoublet
Overlap genenone
Upstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
Downstream geneLOC100041023, LOC547402, LOC100041045, EG623174, Isl1, EG668276, Gm280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215H22.bB6Ng01-215H22.g
ACCGA032447GA032448
length1,1051,074
definitionB6Ng01-215H22.b B6Ng01-215H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,205,216 - 116,206,317)(116,072,383 - 116,073,462)
sequence
gaattcacctattaagactgatcttctacttgccccacttcaaatatata
ccccctacttaccaatctatctagttctatcaaccaagaataaaaagggg
gcaggcattctccatttctctaccttttggtccatattgatcaaaatctc
ttgaaactgtaatgtttcaaagtcacacacatttcccttccacaggggca
gggccatttccctttgaacagtctttatcaaagtctcttaattggttaat
agcaccgagtggttgcagatttactcccttatactgtaaccaaacataat
gctcaaaagacaaacttggttattttctttctttttttaaattttttgta
acattttttattagatattttcctcgtttacattcccaatgctatcccaa
aaggtcattttcttatttaacccctctcctcctctccaagcaaaaccctt
ctttaataaaaagtcacaccattgcaaaagtatctttctggattcttcca
tgaacttttaatatgggccacgtgttcacacaatgtaccattgcctcatg
aagtgtacaagtgcacttttaatcttttatataggatagtaggatattgt
tttgcatttagagtaatatctatgtgaaggcaggtgttatctctgacaat
gcatatgattaaattcatagcacagtacctggaacacttcatgcctaata
aatctttggacagccttgactaaaggtcacaatgatgataggccactgat
caccttaaatttcaaaaagtgtacaacagcatatatgcatatttgtcttc
catctgagtatgctgcaaacctcagagcatttgttaggtatcctcaaaaa
taacaacgtctaagtgataatatctcacagatgctctctccacaaaacac
acgtggaaagtcattgagctattcgaaattggttttgtctaaaaccgagc
atgaattcagatacacctttgattccagcattctgaacgctagagacaga
tggatcattaacaatggatggcttgttttgttctacatagcaagatactg
gccagctagggctacagtagtgagacttcttttagcgagctgaaaacagt
gtata
gaattctctcattgaaaacacgtttggcttcctttcatttacaacgatat
ggataacatgttaggcctggcggaggtccggcaggagataatgaatagag
ttgctgatgtcatcaacaaagtcttggagttcagaagttctctggagacc
tactcttacctctgggtggatgaccgggtagagattctaaggcagtttct
cctgtatggccatgctgtgccatctgaggaaatggatgcacctgcaagcg
aagacatcctgcaaccaccaacactagaacaattcaaagaacaggcaagg
cgacacctcagaatttagttctattaactggctttccatgctgttgctat
atagctgtttatttcctaatcttacagattgacatttacgaggctttgta
tattcagatgagcaagtttgacgacttccgagtatttaacagttggttca
aggtagacatgataccttttaagttgagcttgctcaatgtgatcaagaag
tggtgagggcattcttaaaagctcactgatgtttcaaggatcccagtcct
gagttttcactttccttatctagtgcaattgtattgtccttgtgcacggt
caccatgggagcttcagcaccaagcctcaaatctctacacagtagcactc
tagaaaacaaaggaagacggaagatcagggaaaaattctgtgcttgtgtg
tgtttgcacatatgaacatgcgtgaagaccagatgttgaccttgagtgtt
ttcctctgtcaatcttcaccttacagttttcttttttgaggtaaagtttt
tcactgatcctggggttcacctttttttttatcaaactagatggccagtg
agccgacaagatccgtgtgtctctactcttctgttgagttatatacacat
acttcagtgcctggcttttggtccagctgttagggataaaaactctgtgt
gcgcgtttgtactgcagcacttaatcagtgttagctttaactctagtcta
gtttcctgtaagtcattcaaaggtagactacataaattcctggtcataga
gatgcttgctatgtgattattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_116205216_116206317
seq2: B6Ng01-215H22.b_45_1149 (reverse)

seq1  TATATACTGTTTTTCAGCTCCTTAAAAGAAGGTCTCACT-CTGTAGCCCT  49
      |||| |||| ||||||||||  |||||||| |||||||| ||||||||||
seq2  TATACACTG-TTTTCAGCTCGCTAAAAGAA-GTCTCACTACTGTAGCCCT  48

seq1  AGCTGGCCAGGAACTTTCTATGTAG-ACCAAACAAGCCTCCAATTTTTAA  98
      |||||||||| | ||| |||||||| || |||||||||  | ||| ||||
seq2  AGCTGGCCAGTATCTTGCTATGTAGAACAAAACAAGCCATCCATTGTTAA  98

seq1  AGATCCATCTGTCTCT-GCCTTCTGAATGTTGGAATCAAAGGTGTATCTG  147
       ||||||||||||||| || ||| ||||| ||||||||||||||||||||
seq2  TGATCCATCTGTCTCTAGCGTTCAGAATGCTGGAATCAAAGGTGTATCTG  148

seq1  AATT-GTGCTCGGTTTTAGACAAAACC-ATTTCAAATAGCTCACTGAC-T  194
      ||||  ||||||||||||||||||||| ||||| ||||||||| |||| |
seq2  AATTCATGCTCGGTTTTAGACAAAACCAATTTCGAATAGCTCAATGACTT  198

seq1  TCCACGTGTGTTTTGTGGAGAGAGCATCTGGGAGATATTATCACTTAGAC  244
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCACGTGTGTTTTGTGGAGAGAGCATCTGTGAGATATTATCACTTAGAC  248

seq1  GTTGTTATTTTTTGAGGATACCTAACAAATGCTCTGAGGTTTGCAGCATA  294
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTA-TTTTTGAGGATACCTAACAAATGCTCTGAGGTTTGCAGCATA  297

seq1  CTCAGATGGAAGACAAATATGCATATATGCTGTTCTACACTTTTTGAAAT  344
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCAGATGGAAGACAAATATGCATATATGCTGTTGTACACTTTTTGAAAT  347

seq1  TTAAGGTGATCAGTGGCCTATCATCATTGTGACCCTTAGTCAAGGCTGTC  394
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTAAGGTGATCAGTGGCCTATCATCATTGTGACCTTTAGTCAAGGCTGTC  397

seq1  CAAAGATTTATTAGGCATGAAGTGTACCAGGTACTGTGCTATGAATTTAA  444
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CAAAGATTTATTAGGCATGAAGTGTTCCAGGTACTGTGCTATGAATTTAA  447

seq1  TCATATGCATTGTCAGAGATAACACCTGCCTTCACATAGATATTACTCTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGCATTGTCAGAGATAACACCTGCCTTCACATAGATATTACTCTA  497

seq1  AATGCAAAACAATATCCTACTATCCTATATAAAAGATTAAAAGTGCACTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAAACAATATCCTACTATCCTATATAAAAGATTAAAAGTGCACTT  547

seq1  GTACACTTCATGAGGCAATGGTACATTGTGTGAACACGTGGCCCATATTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTCATGAGGCAATGGTACATTGTGTGAACACGTGGCCCATATTA  597

seq1  AAAGTTCATGGAAGAATCCAGAAAGATACTTTTGCAATGGTGTGACTTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCATGGAAGAATCCAGAAAGATACTTTTGCAATGGTGTGACTTTT  647

seq1  TATTAAAGAAGGGTTTTGCTTGGAGAGGAGGAGAGGGGTTAAATAAGAAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAGAAGGGTTTTGCTTGGAGAGGAGGAGAGGGGTTAAATAAGAAA  697

seq1  ATGACCTTTTGGGATAGCATTGGGAATGTAAACGAGGAAAATATCTAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTTTGGGATAGCATTGGGAATGTAAACGAGGAAAATATCTAATA  747

seq1  AAAAATGTTACAAAAAATTTAAAAAAAGAAAGAAAATAACCAAGTTTGTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTACAAAAAATTTAAAAAAAGAAAGAAAATAACCAAGTTTGTC  797

seq1  TTTTGAGCATTATGTTTGGTTACAGTATAAGGGAGTAAATCTGCAACCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGCATTATGTTTGGTTACAGTATAAGGGAGTAAATCTGCAACCAC  847

seq1  TCGGTGCTATTAACCAATTAAGAGACTTTGATAAAGACTGTTCAAAGGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGCTATTAACCAATTAAGAGACTTTGATAAAGACTGTTCAAAGGGA  897

seq1  AATGGCCCTGCCCCTGTGGAAGGGAAATGTGTGTGACTCTGAAACATTAC  944
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATGGCCCTGCCCCTGTGGAAGGGAAATGTGTGTGACTTTGAAACATTAC  947

seq1  AGTTTCAAGAGATTTTGATCAATATGGACCAAAAGGTAGAGAAATGGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGAGATTTTGATCAATATGGACCAAAAGGTAGAGAAATGGAGA  997

seq1  ATGCCTGCCCCCTTTTTATTTTTGGTTGATAGAACTAGATAGATTGGTAA  1044
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCCTGCCCCCTTTTTATTCTTGGTTGATAGAACTAGATAGATTGGTAA  1047

seq1  GTAGGGGGTATATATTTGAAGTGGGACAAGTAGAAGATCAGTCTTAATAG  1094
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTAGGGGGTATATATTTGAAGTGGGGCAAGTAGAAGATCAGTCTTAATAG  1097

seq1  GTGAATTC  1102
      ||||||||
seq2  GTGAATTC  1105

seq1: chr13_116072383_116073462
seq2: B6Ng01-215H22.g_67_1140

seq1  GAATTCTCTCATTGAAAACACGTTTGGCTTCCTTTCATTTAGAACGATAT  50
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATTCTCTCATTGAAAACACGTTTGGCTTCCTTTCATTTACAACGATAT  50

seq1  GGATAACATGTTAGGCCTGGCGGAGGTCCGGCAGGAGATAATGAATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACATGTTAGGCCTGGCGGAGGTCCGGCAGGAGATAATGAATAGAG  100

seq1  TTGCTGATGTCATCAACAAAGTCTTGGAGTTCAGAAGTTCTCTGGAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGATGTCATCAACAAAGTCTTGGAGTTCAGAAGTTCTCTGGAGACC  150

seq1  TACTCTTACCTCTGGGTGGATGACCGGGTAGAGATTCTAAGGCAGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTACCTCTGGGTGGATGACCGGGTAGAGATTCTAAGGCAGTTTCT  200

seq1  CCTGTATGGCCATGCTGTGCCATCTGAGGAAATGGATGCACCTGCAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGGCCATGCTGTGCCATCTGAGGAAATGGATGCACCTGCAAGCG  250

seq1  AAGACATCCTGCAACCACCAACACTAGAACAATTCAAAGAACAGGCAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCCTGCAACCACCAACACTAGAACAATTCAAAGAACAGGCAAGG  300

seq1  CGACACCTCAGAATTTAGTTCTATTAACTGGCTTTCCATGCTGTTGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACCTCAGAATTTAGTTCTATTAACTGGCTTTCCATGCTGTTGCTAT  350

seq1  ATAGCTGTTTATTTCCTAATCTTACAGATTGACATTTACGAGGCTTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGTTTATTTCCTAATCTTACAGATTGACATTTACGAGGCTTTGTA  400

seq1  TATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGATGAGCAAGTTTGACGACTTCCGAGTATTTAACAGTTGGTTCA  450

seq1  AGGTAGACATGAGACCTTTTAAGTTGAGCTTGCTCAATGTGATCAAGAAG  500
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGTAGACATGATACCTTTTAAGTTGAGCTTGCTCAATGTGATCAAGAAG  500

seq1  TGGTGAGGGCATTCTTAAAAGCTCACTGATGTTTCAAGGATCCCAGTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGGGCATTCTTAAAAGCTCACTGATGTTTCAAGGATCCCAGTCCT  550

seq1  GAGTTTTCACTTTCCTTATCTAGTGGAATTGTATTGTCCTTGTGCACGGT  600
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGTTTTCACTTTCCTTATCTAGTGCAATTGTATTGTCCTTGTGCACGGT  600

seq1  CACCATGGGAGCTTCAGCACCAAGCCTCAAATCTCTACACAGTAGCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGAGCTTCAGCACCAAGCCTCAAATCTCTACACAGTAGCACTC  650

seq1  TAGAAAACAAAGGAAGACGGAAGATCAGGGAAAAATTCTGTGCTTGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAACAAAGGAAGACGGAAGATCAGGGAAAAATTCTGTGCTTGTGTG  700

seq1  TGTTTGCACATATGAACATGCGTGAAGACCAGAGGTTGACCTTGAGTGTT  750
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGTTTGCACATATGAACATGCGTGAAGACCAGATGTTGACCTTGAGTGTT  750

seq1  TTCCTCTGTCAATCTTCACCTTACAGTTTTCTTTTTTGAGGTAAAGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTGTCAATCTTCACCTTACAGTTTTCTTTTTTGAGGTAAAGTTTT  800

seq1  TCACTGATCCTGGGGTTCACC-TTTTTTTTATCAAACTAGATGGCCAGTG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCACTGATCCTGGGGTTCACCTTTTTTTTTATCAAACTAGATGGCCAGTG  850

seq1  AGCCGACAAGATCCGTGTGTCTCTACTCTTCTGTTGAGTTATATACACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGACAAGATCCGTGTGTCTCTACTCTTCTGTTGAGTTATATACACAT  900

seq1  ACTTCAGTGCCTGGCTTTT-GTCCAGGTGTTAGGGATAAAAACTCAGGTG  948
      ||||||||||||||||||| |||||| ||||||||||||||||||  |||
seq2  ACTTCAGTGCCTGGCTTTTGGTCCAGCTGTTAGGGATAAAAACTC-TGTG  949

seq1  TGCGCGTTTGTACTGCAGGCACTTTATCTGTGTTAGCTTTTAACTCTAGT  998
      ||||||||||||||||| |||||| ||| |||||||| ||||||||||||
seq2  TGCGCGTTTGTACTGCA-GCACTTAATCAGTGTTAGC-TTTAACTCTAGT  997

seq1  CTAGTTTCCTGTAATTCAATTTCATAGGTAGTCTTCATAAATCCCTGGGT  1048
      |||||||||||||| |||  |||| |||||| || ||||||| ||| |||
seq2  CTAGTTTCCTGTAAGTCA--TTCAAAGGTAGACTACATAAATTCCT-GGT  1044

seq1  AAAAGAGAAGCTTGCTAATTGTGATTATTCTT  1080
       | ||||| ||||||||  |||||||||||||
seq2  CATAGAGATGCTTGCTA--TGTGATTATTCTT  1074