BAC Information

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BAC

Clone NameB6Ng01-215N23
Chromosome13 (Build37)
Map Location 44,749,606 - 44,893,044
singlet/doubletdoublet
Overlap geneJarid2
Upstream geneRnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868, EG667157
Downstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr, Atxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215N23.bB6Ng01-215N23.g
ACCGA032713GA032714
length1,00991
definitionB6Ng01-215N23.b B6Ng01-215N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,892,042 - 44,893,044)(44,749,606 - 44,749,696)
sequence
gaattctgcagctaaggtacaaaagccttcaaaaggatagttatgtatgc
ttttaaaggaattaatttttttttagtctgtggctatatctcaaagacgt
cctgtcctgccacatatgaaaagcagcttgtgacgtgggcagtggacaaa
ataacataaaaaactaatatagattgtttctcaggaaaaatccacattat
tttctttcagcaagtaaacccttcgggtcacaagtgaccaaatgttctgt
gcacaggcacagcaagcagttgcccaaactcacaactcttttgttatttt
cagagaagttggggtggagagatagctatgctgtatgtattttggaacag
aaataataaatgttttaagatggtaaaatacctacctgccagtttattaa
tgcagtcatcactgtaaaacttttgaccagcaacacttaatgacagcaga
cacagggtactatgtaccctgacggggtatgctgacatagactaaagagg
ccaccagctagctacaactattgacaactgtatttcctatagttcagatt
ctatgcctaaacctaaaatttataatgggcttttccataaacatattcac
cagtgtcaacagcaaggcctgccaagaaaagcctaactgctgagatgata
ctgcaaagcactcggtatcatcccaagggcggcttgggctttgggagagt
ttcaccacagcccaggctggcctgggtccaacaaatggccctcctgcctc
tagcatccaatcactgagcctcccaaactctgggattacaaaccagatat
gagtttaaggaagtccaagaatccaccaactctgacctacacaggttttc
cttatggaatgaagaatgggagaataggtaggggaaagaaaaaacttact
acttgttcattctagggacacaagaactaagactgagtaccaagtaaatt
aagttttccgctaccgtaatgaatgttttttctgaactttaataaaacat
tttttaatt
agtaagggtgagtatgtactaaaaataaatatagaagatgagatcatgaa
tttgaggggtgggggacatagagtagttagagtggagaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44892042_44893044
seq2: B6Ng01-215N23.b_47_1055 (reverse)

seq1  AATTTAAAAATGTTTTA-TAAAGTTCAG-AAAAACATTCATTAC-GTAGC  47
      |||| |||||||||||| |||||||||| ||||||||||||||| |||||
seq2  AATTAAAAAATGTTTTATTAAAGTTCAGAAAAAACATTCATTACGGTAGC  50

seq1  GG-AAACTTAATTTACTTGTTACTCAGTCTTAATTCTTTTTGTCCTAGAA  96
      || |||||||||||||||| |||||||||||| ||||| |   |||||||
seq2  GGAAAACTTAATTTACTTGGTACTCAGTCTTAGTTCTTGTGTCCCTAGAA  100

seq1  TGAACAAGTAGT-AGTTTTTTCTTTCCCCTACCTATTCTCCCATTCTTCA  145
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGTAGTAAGTTTTTTCTTTCCCCTACCTATTCTCCCATTCTTCA  150

seq1  TTCCATAAGGAAAACCTGTGTAGGTCAGAGTTGGTGGATTCTTGGACTTC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGGAAAACCTGTGTAGGTCAGAGTTGGTGGATTCTTGGACTTC  200

seq1  CTTAAACTCATATCTGGTTTGTAATCCCAGAGTTTGGGAGGCTCAGTGAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACTCATATCTGGTTTGTAATCCCAGAGTTTGGGAGGCTCAGTGAT  250

seq1  TGGATGCTAGAGGCAGGAGGGCCATTTGTTGGACCCAGGCCAGCCTGGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTAGAGGCAGGAGGGCCATTTGTTGGACCCAGGCCAGCCTGGGC  300

seq1  TGTGGTGAAACTCTCCCAAAGCCCAAGCCGCCCTTGGGATGATACCGAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGAAACTCTCCCAAAGCCCAAGCCGCCCTTGGGATGATACCGAGT  350

seq1  GC-TTGCAGTATCATCTCAGCAGTTAGGCTTTTCTTGGCAGGCCTTGCTG  394
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCAGTATCATCTCAGCAGTTAGGCTTTTCTTGGCAGGCCTTGCTG  400

seq1  TTGACACTGGTGAATATGTTTATGGAAAAGCCCATTATAAATTTTAGGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACACTGGTGAATATGTTTATGGAAAAGCCCATTATAAATTTTAGGTT  450

seq1  TAGGCATAGAATCTGAACTATAGGAAATACAGTTGTCAATAGTTGTAGCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATAGAATCTGAACTATAGGAAATACAGTTGTCAATAGTTGTAGCT  500

seq1  AGCTGGTGGCCTCTTTAGTCTATGTCAGCATACCCCGTCAGGGTACATAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTGGCCTCTTTAGTCTATGTCAGCATACCCCGTCAGGGTACATAG  550

seq1  TACCCTGTGTCTGCTGTCATTAAGTGTTGCTGGTCAAAAGTTTTACAGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGTGTCTGCTGTCATTAAGTGTTGCTGGTCAAAAGTTTTACAGTG  600

seq1  ATGACTGCATTAATAAACTGGCAGGTAGGTATTTTACCATCTTAAAACAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGCATTAATAAACTGGCAGGTAGGTATTTTACCATCTTAAAACAT  650

seq1  TTATTATTTCTGTTCCAAAATACATACAGCATAGCTATCTCTCCACCCCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTTCTGTTCCAAAATACATACAGCATAGCTATCTCTCCACCCCA  700

seq1  ACTTCTCTGAAAATAACAAAAGAGTTGTGAGTTTGGGCAACTGCTTGCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGAAAATAACAAAAGAGTTGTGAGTTTGGGCAACTGCTTGCTG  750

seq1  TGCCTGTGCACAGAACATTTGGTCACTTGTGACCCGAAGGGTTTACTTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGCACAGAACATTTGGTCACTTGTGACCCGAAGGGTTTACTTGC  800

seq1  TGAAAGAAAATAATGTGGATTTTTCCTGAGAAACAATCTATATTAGTTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAAATAATGTGGATTTTTCCTGAGAAACAATCTATATTAGTTTT  850

seq1  TTATGTTATTTTGTCCACTGCCCACGTCACAAGCTGCTTTTCATATGTGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTATTTTGTCCACTGCCCACGTCACAAGCTGCTTTTCATATGTGG  900

seq1  CAGGACAGGACGTCTTTGAGATATAGCCACAGACTAAAAAAAAATTAATT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGACGTCTTTGAGATATAGCCACAGACTAAAAAAAAATTAATT  950

seq1  CCTTTAAAAGCATACATAACTATCCTTTTGAAGGCTTTTGTACCTTAGCT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAGCATACATAACTATCCTTTTGAAGGCTTTTGTACCTTAGCT  1000

seq1  GCAGAATTC  1003
      |||||||||
seq2  GCAGAATTC  1009

seq1: chr13_44749606_44749696
seq2: B6Ng01-215N23.g_74_164

seq1  AGTAAGGGTGAGTATGTACTAAAAATAAATATAGAAGATGAGATCATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGTGAGTATGTACTAAAAATAAATATAGAAGATGAGATCATGAA  50

seq1  TTTGAGGGGTGGGGGACATAGAGTAGTTAGAGTGGAGAGGG  91
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGGGTGGGGGACATAGAGTAGTTAGAGTGGAGAGGG  91