BAC Information

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BAC

Clone NameB6Ng01-216M10
Chromosome13 (Build37)
Map Location 110,740,354 - 110,895,990
singlet/doubletdoublet
Overlap genePde4d, LOC100040577, Rab3c
Upstream geneLOC100040968
Downstream geneEG432803, 9830130M13Rik, Plk2, LOC100040614, LOC668159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216M10.bB6Ng01-216M10.g
ACCGA033377GA033378
length1,0711,087
definitionB6Ng01-216M10.b B6Ng01-216M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,894,935 - 110,895,990)(110,740,354 - 110,741,446)
sequence
gaattcttggtgtccagtggatctgggacactgggcataatgtgaacaga
agagagtctattagacactgagtgggtgggggagcgaagtgttagtgtga
gtccaaatatttactcctggacaaaattgtttcaattcagatatcaagac
aaatccaacgtaggagaactgtagcttttcccttaaagaccctttaccct
tcaagctatcaccgaagaattggtttctgaagcctcccagaggccaacct
ctgattcctagtcttgaagtagaatggggtagaaatgaccaactattagg
tagtgatttgttgatccatttaagggatactacacttcactccctggact
gcctattgccaagcagggctttatctttacctgggacagaatgacctgga
gacattgcagaaagaataggtcattatgcctactaaccggaccagtctcc
cttgcttgctccaccttgtggttttagagtataaagtgagaacacacatt
ggacccaacgcacaagccttccaggagctggcctggctttagttctccgg
tgatgtccactctcctcaactctcactcaactcagagttcttattccaga
aagactgccgcagcaattttgaaagctcttttcttttggctaactaaata
actgctaaacatgtctaatagaagctcacaattaagagagaaggagagag
aaggggagagaatgtgacgctgaaattttacatattgtaaagctagttgt
tggctggagaaaaacaatctcaatgttccagactctctagaactaccttg
agcttgaatattaatataggtccgtgttagagcagactttgtatgttgca
attctaatcctcatttggggaggtggtgtgggatcagggccctttgggag
gtgtctaggtttgggatgaagctgtatagtcagggcccccgtcgtaatgt
ggtggggctgtgtccctgtaaggatcgctcttccctcctcctcgccttca
tgaatcagtagccctttgcctcttacactcccttccaacttcaagaagga
ttccagaggaggtttccgttg

gaattcctagtttcaaaccagaaagagcagctgccgaataagaaatgcct
ccatccaccccaggtccttcagaatatggtgcactgtgcagacctgagca
accccacaaagccactccagctgtaccgccagtggacggaccggataatg
gaggagttcttccgccagggggaccgagagcgggagcgtggcatggagat
aagtcccatgtgtgacaagcacaacgcctctgtggaaaaatcacaggtaa
ttcagcaacacacagaagggcggagccaccgctgaagcacttggctgctc
tgtccttctacctcacagtattggttggtttgtttgtgtgttttttaaat
tacttgggatttgacacgatagacttcatttctgttgatgattcaaagaa
ttttcttacgatttacagtcacatagccatacgtatggtacaagagtctc
tcactgggactctgtccatctaatgtactccatacatagaatgattggct
tgtttcagttatctctacaaattggctattctcaaataaggtccaggacc
tacaccttcctatgtaaataactagttttctttatattgttaagtatccc
ttgagataagagttctaactttggccagctaacaaccatactttcgtgat
ctgttggctcaaactgaccaatttaccaaactcgggttagtaatattcta
tgcaggctccatgggggaaccgtgatttggttgagcttctccaagtttct
taggcccactggttttcttctttttttatgaccaggtgggcttcatagac
tatatcgttcatccactctgggagacgtgggcagacctcgtacatcccga
tgcccaggacatcttggacaactttggaggacaatcgtgagtggtaccag
agcacaatcccccagagcccctcctctgcacttgatgaccaagagaggcc
gggcagggacaggactgaaaatttcagttgaactaaccttggaggaagac
tgcgagtcagaacactgaaaagggacagtgcagtcaggtggagtaaggac
ctagctgcagtgactctaagactctgtgccactcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_110894935_110895990
seq2: B6Ng01-216M10.b_45_1115 (reverse)

seq1  CAAC-GAAAACTCCTCTTG-ATCC-TCTTGAAGTTGGA--GGAGTGTAAG  45
      |||| |||| ||||||| | |||| |||||||||||||  ||||||||||
seq2  CAACGGAAACCTCCTCTGGAATCCTTCTTGAAGTTGGAAGGGAGTGTAAG  50

seq1  A-GCAAAGGGCCTACTGATTCA-GAA-GCGA-GAGGAGG--AGAGCGATC  89
      | |||||||| ||||||||||| ||| |||| |||||||  |||||||||
seq2  AGGCAAAGGG-CTACTGATTCATGAAGGCGAGGAGGAGGGAAGAGCGATC  99

seq1  TTTACA-GGACACCAGCCCCA-CACATTACGACGGGGGCCCTGACTATAC  137
       ||||| ||||| |||||||| ||||||||||||||||||||||||||||
seq2  CTTACAGGGACA-CAGCCCCACCACATTACGACGGGGGCCCTGACTATAC  148

seq1  AGCCTCAT-CCAAACCTAGACACCTCCCAAA-GGCCCTGATCCCACA-CA  184
      ||| |||| |||||||||||||||||||||| ||||||||||||||| ||
seq2  AGCTTCATCCCAAACCTAGACACCTCCCAAAGGGCCCTGATCCCACACCA  198

seq1  CCT-CCCAAATGAGGATTAGAATTGCAACATACAAAGTCTGCTCTAACAC  233
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCAAATGAGGATTAGAATTGCAACATACAAAGTCTGCTCTAACAC  248

seq1  GGACCTATATTAATATTCAAGCTCAAGGTAGTTCTAGAGAGTCTGGAACA  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTATATTAATATTCAAGCTCAAGGTAGTTCTAGAGAGTCTGGAACA  298

seq1  TTGAGATTGTTTTTCTCCAGCCAACAACTAGCTTTACAATATGTAAAATT  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTGTTTTTCTCCAGCCAACAACTAGCTTTACAATATGTAAAATT  348

seq1  TCAGCGTCACATTCTCTCCCCTTCTCTCTCCTTCTCTCTTAATTGTGAGC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTCACATTCTCTCCCCTTCTCTCTCCTTCTCTCTTAATTGTGAGC  398

seq1  TTCTATTAGACATGTTTAGCAGTTATTTAGTTAGCCAAAAGAAAAGAGCT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTAGACATGTTTAGCAGTTATTTAGTTAGCCAAAAGAAAAGAGCT  448

seq1  TTCAAAATTGCTGCGGCAGTCTTTCTGGAATAAGAACTCTGAGTTGAGTG  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATTGCTGCGGCAGTCTTTCTGGAATAAGAACTCTGAGTTGAGTG  498

seq1  AGAGTTGAGGAGAGTGGACATCACCGGAGAACTAAAGCCAGGCCAGCTCC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGGAGAGTGGACATCACCGGAGAACTAAAGCCAGGCCAGCTCC  548

seq1  TGGAAGGCTTGTGCGTTGGGTCCAATGTGTGTTCTCACTTTATACTCTAA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGCTTGTGCGTTGGGTCCAATGTGTGTTCTCACTTTATACTCTAA  598

seq1  AACCACAAGGTGGAGCAAGCAAGGGAGACTGGTCCGGTTAGTAGGCATAA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAAGGTGGAGCAAGCAAGGGAGACTGGTCCGGTTAGTAGGCATAA  648

seq1  TGACCTATTCTTTCTGCAATGTCTCCAGGTCATTCTGTCCCAGGTAAAGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATTCTTTCTGCAATGTCTCCAGGTCATTCTGTCCCAGGTAAAGA  698

seq1  TAAAGCCCTGCTTGGCAATAGGCAGTCCAGGGAGTGAAGTGTAGTATCCC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCCTGCTTGGCAATAGGCAGTCCAGGGAGTGAAGTGTAGTATCCC  748

seq1  TTAAATGGATCAACAAATCACTACCTAATAGTTGGTCATTTCTACCCCAT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGATCAACAAATCACTACCTAATAGTTGGTCATTTCTACCCCAT  798

seq1  TCTACTTCAAGACTAGGAATCAGAGGTTGGCCTCTGGGAGGCTTCAGAAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCAAGACTAGGAATCAGAGGTTGGCCTCTGGGAGGCTTCAGAAA  848

seq1  CCAATTCTTCGGTGATAGCTTGAAGGGTAAAGGGTCTTTAAGGGAAAAGC  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTTCGGTGATAGCTTGAAGGGTAAAGGGTCTTTAAGGGAAAAGC  898

seq1  TACAGTTCTCCTACGTTGGATTTGTCTTGATATCTGAATTGAAACAATTT  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTCTCCTACGTTGGATTTGTCTTGATATCTGAATTGAAACAATTT  948

seq1  TGTCCAGGAGTAAATATTTGGACTCACACTAACACTTCGCTCCCCCACCC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGGAGTAAATATTTGGACTCACACTAACACTTCGCTCCCCCACCC  998

seq1  ACTCAGTGTCTAATAGACTCTCTTCTGTTCACATTATGCCCAGTGTCCCA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGTCTAATAGACTCTCTTCTGTTCACATTATGCCCAGTGTCCCA  1048

seq1  GATCCACTGGACACCAAGAATTC  1056
      |||||||||||||||||||||||
seq2  GATCCACTGGACACCAAGAATTC  1071


seq1: chr13_110740354_110741446
seq2: B6Ng01-216M10.g_67_1153

seq1  GAATTCCTAGTTTCAAACCAGAAAGAGCAGCTGCCGAATAAGAAATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTTTCAAACCAGAAAGAGCAGCTGCCGAATAAGAAATGCCT  50

seq1  CCATCCACCCCAGGTCCTTCAGAATATGGTGCACTGTGCAGACCTGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACCCCAGGTCCTTCAGAATATGGTGCACTGTGCAGACCTGAGCA  100

seq1  ACCCCACAAAGCCACTCCAGCTGTACCGCCAGTGGACGGACCGGATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACAAAGCCACTCCAGCTGTACCGCCAGTGGACGGACCGGATAATG  150

seq1  GAGGAGTTCTTCCGCCAGGGGGACCGAGAGCGGGAGCGTGGCATGGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTCTTCCGCCAGGGGGACCGAGAGCGGGAGCGTGGCATGGAGAT  200

seq1  AAGTCCCATGTGTGACAAGCACAACGCCTCTGTGGAAAAATCACAGGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCATGTGTGACAAGCACAACGCCTCTGTGGAAAAATCACAGGTAA  250

seq1  TTCAGCAACACACAGAAGGGCGGAGCCACCGCTGAAGCACTTGGCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAACACACAGAAGGGCGGAGCCACCGCTGAAGCACTTGGCTGCTC  300

seq1  TGTCCTTCTACCTCACAGTATTGGTTGGTTTGTTTGTGTGTTTTTTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCTACCTCACAGTATTGGTTGGTTTGTTTGTGTGTTTTTTAAAT  350

seq1  TACTTGGGATTTGACACGATAGACTTCATTTCTGTTGATGATTCAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGGATTTGACACGATAGACTTCATTTCTGTTGATGATTCAAAGAA  400

seq1  TTTTCTTACGATTTACAGTCACATAGCCATACGTATGGTACAAGAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACGATTTACAGTCACATAGCCATACGTATGGTACAAGAGTCTC  450

seq1  TCACTGGGACTCTGTCCATCTAATGTACTCCATACATAGAATGATTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGACTCTGTCCATCTAATGTACTCCATACATAGAATGATTGGCT  500

seq1  TGTTTCAGTTATCTCTACAAATTGGCTATTCTCAAATAAGGTCCAGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTTATCTCTACAAATTGGCTATTCTCAAATAAGGTCCAGGACC  550

seq1  TACACCTTCCTATGTAAATAACTAGTTTTCTTTATATTGTTAAGTATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTCCTATGTAAATAACTAGTTTTCTTTATATTGTTAAGTATCCC  600

seq1  TTGAGATAAGAGTTCTAACTTTGGCCAGCTAACAACCATACTTTCGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATAAGAGTTCTAACTTTGGCCAGCTAACAACCATACTTTCGTGAT  650

seq1  CTGTTGGCTCAAACTGACCAATTTACCAAACTCGGGTTAGTAATATTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCTCAAACTGACCAATTTACCAAACTCGGGTTAGTAATATTCTA  700

seq1  TGCAGGCTCCATGGGGGAACCGTGATTTGGTTGAGCTTCTCCAAGTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTCCATGGGGGAACCGTGATTTGGTTGAGCTTCTCCAAGTTTCT  750

seq1  TAGGCCCACTGGTTTTCTTCTTTTTTTATGACCAGGTGGGCTTCATAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCCACTGGTTTTCTTCTTTTTTTATGACCAGGTGGGCTTCATAGAC  800

seq1  TATATCGTTCATCCACTCTGGGAGACGTGGGCAGACCTCGTACATCCCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCGTTCATCCACTCTGGGAGACGTGGGCAGACCTCGTACATCCCGA  850

seq1  TGCCCAGGACATCTTGGAC-ACTTTGGAGGACAATCGTGAGTGGTACCAG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGCCCAGGACATCTTGGACAACTTTGGAGGACAATCGTGAGTGGTACCAG  900

seq1  AGCACAATCCCCCAGAGCCCCTCCCCTGCACCTGATGACCAAGAGGAGGG  949
      |||||||||||||||||||||||| |||||| |||||||||||| |||| 
seq2  AGCACAATCCCCCAGAGCCCCTCCTCTGCACTTGATGACCAAGA-GAGGC  949

seq1  CCGGCAGGGACA-GACTGAAAAATTCCAGTTTGAACTAACCTTGGAGGAA  998
      | |||||||||| ||||| |||||| ||| ||||||||||||||||||||
seq2  CGGGCAGGGACAGGACTG-AAAATTTCAG-TTGAACTAACCTTGGAGGAA  997

seq1  GACTGCGAGTCAG-ACACTGAAAA-GGACAGTGGAAGTCAGGTGGAGGAA  1046
      ||||||||||||| |||||||||| ||||||| | |||||||||||| ||
seq2  GACTGCGAGTCAGAACACTGAAAAGGGACAGT-GCAGTCAGGTGGAGTAA  1046

seq1  GACACTAGCTGCAGTGACTCTAAGACTCTGTGCACCCAAGACTCAGA  1093
      |   |||||||||||||||||||||||||||||       |||||||
seq2  GGACCTAGCTGCAGTGACTCTAAGACTCTGTGC------CACTCAGA  1087


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