BAC Information

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BAC

Clone NameB6Ng01-217A23
Chromosome13 (Build37)
Map Location 66,723,031 - 66,854,820
singlet/doubletdoublet
Overlap geneMzf6d, Vmn2r-ps106, LOC666027
Upstream geneLOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik
Downstream geneLOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A23.bB6Ng01-217A23.g
ACCGA033582GA033583
length1,0671,071
definitionB6Ng01-217A23.b B6Ng01-217A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,723,031 - 66,724,033)(66,853,736 - 66,854,820)
sequence
gaattctctgatgaattataagatcatatttgtgagtgaagcatttgtca
cattcactacattgataagggttttcccctgtatgaattctctgatgaac
attaagattatatttttgggtaaagcatttgtcacattcactacatttgt
aaggtttttctcctgtataaactctgatgaatacttttgggtaaagcttt
ttttcacattcactacatttgtaaggtttctttcctgtatgaattatttg
atgactactaacattacatttttgggtaaagcatttgttacattcactac
atttgtaaggcttctttcctgtatgaattatctgatgacttctaggactg
tgtttgtcagtacagcatttgtcacactcactacatttataaggtttctc
tccagtatgaattctctgatgaatactaagactgtatttgtgcaaaaagc
atttgtcacattcactatatatgtaaggtttctctcctgtatggattctc
tgatgtctaagcttgcatttcttggtgaaacatctggcacgttcactaca
tctgtaaggtttctttccactattggtttgtttcagcctgagtatttgct
tagagttaaaaaccttatcaagcactataccattgtgttctttctttcct
atgtggattccttgatgtagaccagtgatagaacacaaatttaaacagtt
tatacagtttttatgtttgcaaggtcctctggtgtttccattttcatgtc
tgtttatgtttgatgactcaacacgtgtattcctgaagttagctttggta
aatacacttttgggtgtattcataaatgattttgccatgctttgaccttt
gtaagacttctcctggatattcacatgctgggatgtgctggaacttttag
tcattatgcattcatttgtctttaaagaggcttactggatatgatatctt
taaatcatcttcatgtttatgtccatatgaaaattcaatatgtatttatc
atattaaaagatagattggttattctttatttagtggaggacatgtccac
tatgaataacattctcc
gaattccaaatgtttctggcactaaataatcacaatttctgcaacatatg
agaaggtgaaaagtagaaattattggaatagaagaagaatatcagctcaa
aggtctagaaaatattttcagtgaaattatgaatgaaaaattttctaaac
taaagaaaatacctatcaaagtacaagaagcatccaaaatagcaaataga
ttggaccaaaaaagtccttttgccacataacagtcaaaactctaaacata
taaagcaaagaaatatgaaaaactgcaacagaaagaaataaaaaactaaa
taaaacaaaaacaagtaacgtatggaagcagacctattagcttcatatct
gtcttctcaatgtctactagtaaagacaacagtgtttggatcgttttgtg
ctgcagagtcaaagaaaccacccatgtttctacaagaaagcaactggagc
aaatgttttggacagattcagaatcagctatgataatgaagttattcaga
ggtcactgcctgagacctcacaggtggtcccatctgggtgatgcttccca
tgcagccccagaaaggacccaccatcccatctcccacggctcaaccacct
tcccctacccattgtgggcagtgatcctgtgctcaccatgtctaaatctc
agagcttcctgaggtcccctcaatgcacccgacagcagatctcagagcag
gacacagagaaccattcaagcctgcacagccccagcaatcttgtagaaag
gcatccggaagatcccgcctctttgtctgactggcatatctgcctggcga
ccttgattggccagtgagtcttacccctcctcaatgttaaagtttgcttc
ctgtcgaaggctggaccttttccagatctctggagcctttcagctcatta
gcatttgtgcttgcctgggggaagtatccacatttcagctcagcattcag
ctgccagctcctcccctctgtgagcatgatcttacttcagacttgctgac
atccttcatagcactgcttctttctgaaatcaaggttagttagctgatag
gccattactcttagttcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_66723031_66724033
seq2: B6Ng01-217A23.b_116_1114

seq1  GGGTTTTCCCCTGTATGAATTCTCTGATGAACATTAAGATTATATTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCCCCTGTATGAATTCTCTGATGAACATTAAGATTATATTTTTG  50

seq1  GGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCCTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGCATTTGTCACATTCACTACATTTGTAAGGTTTTTCTCCTGTAT  100

seq1  AAACTCTGATGAATACTTTTGGGTAAAGCTTTTTTTCACATTCACTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGATGAATACTTTTGGGTAAAGCTTTTTTTCACATTCACTACAT  150

seq1  TTGTAAGGTTTCTTTCCTGTATGAATTATTTGATGACTACTAACATTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGTTTCTTTCCTGTATGAATTATTTGATGACTACTAACATTACA  200

seq1  TTTTTGGGTAAAGCATTTGTTACATTCACTACATTTGTAAGGCTTCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGGTAAAGCATTTGTTACATTCACTACATTTGTAAGGCTTCTTTC  250

seq1  CTGTATGAATTATCTGATGACTTCTAGGACTGTGTTTGTCAGTACAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGAATTATCTGATGACTTCTAGGACTGTGTTTGTCAGTACAGCAT  300

seq1  TTGTCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCACACTCACTACATTTATAAGGTTTCTCTCCAGTATGAATTCTCTG  350

seq1  ATGAATACTAAGACTGTATTTGTGCAAAAAGCATTTGTCACATTCACTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATACTAAGACTGTATTTGTGCAAAAAGCATTTGTCACATTCACTAT  400

seq1  ATATGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTCTAAGCTTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAGGTTTCTCTCCTGTATGGATTCTCTGATGTCTAAGCTTGCAT  450

seq1  TTCTTGGTGAAACATCTGGCACGTTCACTACATCTGTAAGGTTTCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTGAAACATCTGGCACGTTCACTACATCTGTAAGGTTTCTTTCC  500

seq1  ACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTAGAGTTAAAAACCTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGGTTTGTTTCAGCCTGAGTATTTGCTTAGAGTTAAAAACCTTAT  550

seq1  CAAGCACTATACCATTGTGTTCTTTCTTTCCTATGTGGATTCCTTGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTATACCATTGTGTTCTTTCTTTCCTATGTGGATTCCTTGATGT  600

seq1  AGACCAGTGATAGAACACAAATTTAAACAGTTTATACAGTTTTTATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGATAGAACACAAATTTAAACAGTTTATACAGTTTTTATGTTT  650

seq1  GCAAGGTCCTCTGGTGTTTCCATTTTCATGTCTGTTTATGTTTGATGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCCTCTGGTGTTTCCATTTTCATGTCTGTTTATGTTTGATGACT  700

seq1  CAACACGTGTATTCCTGAAGTTAGCTTGGTAAAATACAC-TTTGGGTGTA  749
      ||||||||||||||||||||||||||| |  |||||||| ||||||||||
seq2  CAACACGTGTATTCCTGAAGTTAGCTTTGGTAAATACACTTTTGGGTGTA  750

seq1  TTCATAAATGATTTTGCCATGCTTTGACCTTTGTAAGACTTCTCCTGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATGATTTTGCCATGCTTTGACCTTTGTAAGACTTCTCCTGGAT  800

seq1  ATTCACATGCTGGGATGTGCTGGAACTTTTAGTCATTATGCATTCATTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGCTGGGATGTGCTGGAACTTTTAGTCATTATGCATTCATTTG  850

seq1  TCTTTAAAGAGGCTTTACTGGATATGAATATCTTTTAAATCATCTTCATG  899
      ||||||||||||| |||||||||||| ||||| |||||||||||||||||
seq2  TCTTTAAAGAGGC-TTACTGGATATG-ATATC-TTTAAATCATCTTCATG  897

seq1  TTTATGTCCATATGAAAATTCAAATATGTATTTATCATATTTAAAAGAAT  949
      ||||||||||||||||||||| ||||||||||||||||| ||||||| ||
seq2  TTTATGTCCATATGAAAATTC-AATATGTATTTATCATA-TTAAAAG-AT  944

seq1  AGATATGTTATTC-TTATATAAGTGAGGACAATGTCCACTATGAATAACA  998
      ||||  ||||||| |||| ||   |||||| |||||||||||||||||||
seq2  AGATTGGTTATTCTTTATTTAGTGGAGGAC-ATGTCCACTATGAATAACA  993

seq1  -TCTCC  1003
       |||||
seq2  TTCTCC  999

seq1: chr13_66853736_66854820
seq2: B6Ng01-217A23.g_70_1140 (reverse)

seq1  ATGT-AACT-AGAGTAATGGGCTATTCAAGCT-ACTCACCTTGATTTCAG  47
      |||| |||| |||||||||| ||||   |||| ||| |||||||||||||
seq2  ATGTGAACTAAGAGTAATGGCCTAT--CAGCTAACTAACCTTGATTTCAG  48

seq1  GAAAAAGAAGGCAAGTGCTATGAAGAATGTTCAGGCAAGGTCTGAAGTAA  97
         |||||||   |||||||||||| ||| ||| |||| |||||||||||
seq2  ---AAAGAAG--CAGTGCTATGAAGGATG-TCA-GCAA-GTCTGAAGTAA  90

seq1  GGATCATTGCTCACAGAGGGGAGGAGCTGGCAGCTGATTGCCTGAGCTGG  147
       ||||| |||||||||||||||||||||||||||||| || |||||||| 
seq2  -GATCA-TGCTCACAGAGGGGAGGAGCTGGCAGCTGAATG-CTGAGCTGA  137

seq1  AATGGTGGATTCTTCCCCCAGGGCAAGCACAAATGCTAATGAGCTGAAAA  197
      ||| |||||| ||||||||| |||||||||||||||||||||||||||| 
seq2  AAT-GTGGATACTTCCCCCA-GGCAAGCACAAATGCTAATGAGCTGAAA-  184

seq1  GGGCTCCAGAGATCTGGAAAAGGTCCAGCCTTCGACAGGAAGCAAACTTT  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGCTCCAGAGATCTGGAAAAGGTCCAGCCTTCGACAGGAAGCAAACTTT  233

seq1  AACATTGAGGAGGGGTAAGACTCACTGGCCAATCAAGGTCGCCAGGCAGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGAGGAGGGGTAAGACTCACTGGCCAATCAAGGTCGCCAGGCAGA  283

seq1  TATGCCAGTCAGACAAAGAGGCGGGATCTTCCGGATGCCTTTCTACAAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCAGTCAGACAAAGAGGCGGGATCTTCCGGATGCCTTTCTACAAGA  333

seq1  TTGCTGGGGCTGTGCAGGCTTGAATGGTTCTCTGTGTCCTGCTCTGAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGGCTGTGCAGGCTTGAATGGTTCTCTGTGTCCTGCTCTGAGAT  383

seq1  CTGCTGTCGGGTGCATTGAGGGGACCTCAGGAAGCTCTGAGATTTAGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCGGGTGCATTGAGGGGACCTCAGGAAGCTCTGAGATTTAGACA  433

seq1  TGGTGAGCACAGGATCACTGCCCACAATGGGTAGGGGAAGGTGGTTGAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGCACAGGATCACTGCCCACAATGGGTAGGGGAAGGTGGTTGAGC  483

seq1  CGTGGGAGATGGGATGGTGGGTCCTTTCTGGGGCTGCATGGGAAGCATCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAGATGGGATGGTGGGTCCTTTCTGGGGCTGCATGGGAAGCATCA  533

seq1  CCCAGATGGGACCACCTGTGAGGTCTCAGGCAGTGACCTCTGAATAACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGGGACCACCTGTGAGGTCTCAGGCAGTGACCTCTGAATAACTT  583

seq1  CATTATCATAGCTGATTCTGAATCTGTCCAAAACATTTGCTCCAGTTGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCATAGCTGATTCTGAATCTGTCCAAAACATTTGCTCCAGTTGCT  633

seq1  TTCTTGTAGAAACATGGGTGGTTTCTTTGACTCTGCAGCACAAAACGATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTAGAAACATGGGTGGTTTCTTTGACTCTGCAGCACAAAACGATC  683

seq1  CAAACACTGTTGTCTTTACTAGTAGACATTGAGAAGACAGATATGAAGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACTGTTGTCTTTACTAGTAGACATTGAGAAGACAGATATGAAGCT  733

seq1  AATAGGTCTGCTTCCATACGTTACTTGTTTTTGTTTTATTTAGTTTTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCTGCTTCCATACGTTACTTGTTTTTGTTTTATTTAGTTTTTTA  783

seq1  TTTCTTTCTGTTGCAGTTTTTCATATTTCTTTGCTTTATATGTTTAGAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTGTTGCAGTTTTTCATATTTCTTTGCTTTATATGTTTAGAGT  833

seq1  TTTGACTGTTATGTGGCAAAAGGACTTTTTTGGTCCAATCTATTTGCTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTTATGTGGCAAAAGGACTTTTTTGGTCCAATCTATTTGCTAT  883

seq1  TTTGGATGCTTCTTGTACTTTGATAGGTATTTTCTTTAGTTTAGAAAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGCTTCTTGTACTTTGATAGGTATTTTCTTTAGTTTAGAAAATT  933

seq1  TTTCATTCATAATTTCACTGAAAATATTTTCTAGACCTTTGAGCTGATAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCATAATTTCACTGAAAATATTTTCTAGACCTTTGAGCTGATAT  983

seq1  TCTTCTTCTATTCCAATAATTTCTACTTTTCACCTTCTCATATGTTGCAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTATTCCAATAATTTCTACTTTTCACCTTCTCATATGTTGCAG  1033

seq1  AAATTGTGATTATTTAGTGCCAGAAACATTTGGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGATTATTTAGTGCCAGAAACATTTGGAATTC  1071