BAC Information

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BAC

Clone NameB6Ng01-217K12
Chromosome13 (Build37)
Map Location 118,079,717 - 118,080,901
singlet/doubletsinglet
Overlap genenone
Upstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312, Emb
Downstream geneEG623365, LOC382807, Hcn1, LOC100041695, LOC674926
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217K12.bB6Ng01-217K12.g
ACCGA034001GA034002
length1,1971,217
definitionB6Ng01-217K12.b B6Ng01-217K12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacaatctccaaacttgttcattaaaatcagttgtaggaagaaaa
tgacggaagtttcctcgtgtaataagaataagaattagctaatgtttttg
ctcttaatctaaagtacatgaaatttatctatcaatctaacttttctgct
ttaattgtatcaacttgctcaaaggtctgattccttttgtatctctgtct
ctacagttgcacacacagactaaatgggctcaaattaatgtaatagtatg
tttcagaaaggcgaccactatctacaggagtgaacttaggctggatgcct
ttcagtccaaatgatagttattaacagccaggagctgaatggccttcatt
tcggctgattttataagtgtgatcccaaagaaacgaactcaaactataca
gtgagttttgcaaaatctggggatttgtggcaaaacgttgaatggagatc
ttaaatcagaacttatacattcattttctttccatttttctttatactac
agtggagtgtggcggggtttggtaagttacctatggcaaacactgagtga
tatctaatgaatgagagcaccaggcatcggctagtgttttttcttatcaa
agcaaagccttaggtatcctggggacttacatctgggcatggcagttaag
agatttagagagatcatgatttgaagctacggtgttttctgggaattaga
taataacctagttgagagacagcactttctccctctgtttcttccctaga
ctctaccttcagcccatgttttatagtttgaaagacaaaatagccattgc
aaaaacatggggaggagaactgtgaattaaactagagtcttcttcccact
tctcctttgatcaaccacacccagcatctttacaataaaggcatgctgaa
gtatttgagactgttgttccgtaagaccctaagcatcacctcaaggttca
atcaacataactaagatattattctttgttgtggttaagcccctcccagc
caaaaattatgccctggcaaatgaaaccaggactcagtaaatgtgataca
tgctgtgcgcctagattggcaagatctacgctacaccaccaatctttctt
ccatctatgagaccccttagaaccttgccgatttcttcaaggcaagtgta
ttctgcctcggctttcttctccattcacctgcatcctcccccacttc

gaattctctaggcttcttgtatgttcatggacatctctttctttaggtta
gggaagttttcttctattattttgttgaagatatttgctggccctttaag
ttgaaaatcttcattgtcatctatacctattatccttaggtttggtcttt
tcattgtgtcctgatttcctggatgttttgagtcaggatctttttgcatt
ttgcatttcctttgattgttgtgttcatgttccctatggaatcttctgca
cctgagattctattttccatctcttgtattctgttgttgatgctcgcatc
tacggttcctgatttctttcctaggatttctatctccagagttgtctcac
ttttggttttctttactgtctctacttccatttttagatcttagatggtt
ttgttcaattccattacctgtttggttgtgttttcctgtagttctttaag
gaatttttttatttcttctttaagaacttctacctgtttagcagtgtttt
cctataattctttaagggatttttgtgctttctctttaaggccttctacc
tgtctagcagtgttcacctttatatccttaagtgagttattaatgccttt
cttaaaatcctctatcagcattatgaaatatgattttaaatctgaatctt
gctttttgggtgtgctggggtttccaggactcgctgtggtgggagtacct
ggttccaatgatgccgaatagtcttggtttctgttagtaagatttttaca
tttgtctttcaccatctggtaatctctggtattagatgtcctagctgtct
ctggctgaagctttgttcctctgtgattctgttagcctctgttagcactc
ctgggagtccagatctctcctgagtctcagtggtcagagcactctctgca
ggcaagctctccctctggcaggaaaggtgcaataagaggtctgaagctca
gctcgggctttcttggctgaagatgaaagccttgaaagccccctgtccaa
gaatgctctgttgcttctgcggtctgctactctcctgtgcgactgtctct
gagagacccagatatcaggatggtcatctcgctgagtcccgaagttcaag
ccctccttggaagctgaactctcctctgggcggaaaggtcacaaatgctt
ggtcaacctcgtatctgctgagtataaggccaaatgatcctggtactcaa
aagaacctctgttgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_118079717_118080901
seq2: B6Ng01-217K12.b_46_1242

seq1  GAATTCACAATCTCCAAACTTGTTCATTAAAATCAGTTGTAGGAAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATCTCCAAACTTGTTCATTAAAATCAGTTGTAGGAAGAAAA  50

seq1  TGACGGAAGTTTCCTCGTGTAATAAGAATAAGAATTAGCTAATGTTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGAAGTTTCCTCGTGTAATAAGAATAAGAATTAGCTAATGTTTTTG  100

seq1  CTCTTAATCTAAAGTACATGAAATTTATCTATCAATCTAACTTTTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATCTAAAGTACATGAAATTTATCTATCAATCTAACTTTTCTGCT  150

seq1  TTAATTGTATCAACTTGCTCAAAGGTCTGATTCCTTTTGTATCTCTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGTATCAACTTGCTCAAAGGTCTGATTCCTTTTGTATCTCTGTCT  200

seq1  CTACAGTTGCACACACAGACTAAATGGGCTCAAATTAATGTAATAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTGCACACACAGACTAAATGGGCTCAAATTAATGTAATAGTATG  250

seq1  TTTCAGAAAGGCGACCACTATCTACAGGAGTGAACTTAGGCTGGATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAGGCGACCACTATCTACAGGAGTGAACTTAGGCTGGATGCCT  300

seq1  TTCAGTCCAAATGATAGTTATTAACAGCCAGGAGCTGAATGGCCTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCAAATGATAGTTATTAACAGCCAGGAGCTGAATGGCCTTCATT  350

seq1  TCGGCTGATTTTATAAGTGTGATCCCAAAGAAACGAACTCAAACTATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGATTTTATAAGTGTGATCCCAAAGAAACGAACTCAAACTATACA  400

seq1  GTGAGTTTTGCAAAATCTGGGGATTTGTGGCAAAACGTTGAATGGAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTTGCAAAATCTGGGGATTTGTGGCAAAACGTTGAATGGAGATC  450

seq1  TTAAATCAGAACTTATACATTCATTTTCTTTCCATTTTTCTTTATACTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAGAACTTATACATTCATTTTCTTTCCATTTTTCTTTATACTAC  500

seq1  AGTGGAGTGTGGCGGGGTTTGGTAAGTTACCTATGGCAAACACTGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGTGTGGCGGGGTTTGGTAAGTTACCTATGGCAAACACTGAGTGA  550

seq1  TATCTAATGAATGAGAGCACCAGGCATCGGCTAGTGTTTTTTCTTATCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATGAATGAGAGCACCAGGCATCGGCTAGTGTTTTTTCTTATCAA  600

seq1  AGCAAAGCCTTAGGTATCCTGGGGACTTACATCTGGGCATGGCAGTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGCCTTAGGTATCCTGGGGACTTACATCTGGGCATGGCAGTTAAG  650

seq1  AGATTTAGAGAGATCATGATTTGAAGCTACGGTGTTTTCTGGGAATTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGAGAGATCATGATTTGAAGCTACGGTGTTTTCTGGGAATTAGA  700

seq1  TAATAACCTAGTTGAGAGACAGCACTTTCTCCCTCTGTTTCTTCCCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACCTAGTTGAGAGACAGCACTTTCTCCCTCTGTTTCTTCCCTAGA  750

seq1  CTCTACCTTCAGCCCATGTTTTATAGTTTGAAAGACAAAATAGCCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCTTCAGCCCATGTTTTATAGTTTGAAAGACAAAATAGCCATTGC  800

seq1  AAAAACATGGGGAGGAGAACTGTGAATTAAACTAGAGTCTTCTTCCCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATGGGGAGGAGAACTGTGAATTAAACTAGAGTCTTCTTCCCACT  850

seq1  TCTCCTTTGATCAACCACACCCAGCATCTTTACAATAAAGGCATGCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTGATCAACCACACCCAGCATCTTTACAATAAAGGCATGCTGAA  900

seq1  GTA-TTGAGACTGTTGTTTCCGTAAGACCCTAAGCATCA-CTCAAGGTTC  948
      ||| |||||||||||| |||||||||||||||||||||| ||||||||||
seq2  GTATTTGAGACTGTTG-TTCCGTAAGACCCTAAGCATCACCTCAAGGTTC  949

seq1  AATCAACATAACTAAGATA-TATTC-TTGTTGTGG-TAAGCC---TCCAG  992
      ||||||||||||||||||| ||||| ||||||||| ||||||    ||||
seq2  AATCAACATAACTAAGATATTATTCTTTGTTGTGGTTAAGCCCCTCCCAG  999

seq1  C--AAAAATATGCCCTGGC-AATGAAAACAGGACTCAGTTAATGTGAATA  1039
      |  |||| ||||||||||| ||||||| ||||||||||| |||||| |||
seq2  CCAAAAATTATGCCCTGGCAAATGAAACCAGGACTCAGTAAATGTG-ATA  1048

seq1  CATGCTGTGCGCCTAGATTGGGCAGATCTACCGCTACACCACC-ATCTT-  1087
      |||||||||||||||||||||  ||||||| |||||||||||| ||||| 
seq2  CATGCTGTGCGCCTAGATTGGCAAGATCTA-CGCTACACCACCAATCTTT  1097

seq1  -CTCCATCTATGAGACCCCTTAGAA-CTTG-CGGTTTCTCCAGGCCATGT  1134
        ||||||||||||||||||||||| |||| || ||||| || | || ||
seq2  CTTCCATCTATGAGACCCCTTAGAACCTTGCCGATTTCTTCAAGGCAAGT  1147

seq1  GT-TTCTG-CTCTGCTTTTCTTCTTCCTTCTCCTCTGCATCCTCCCCCTC  1182
      || ||||| ||| || |||||||| | ||| |  |||||||||||||| |
seq2  GTATTCTGCCTCGGC-TTTCTTCTCCATTCAC--CTGCATCCTCCCCCAC  1194

seq1  TTC  1185
      |||
seq2  TTC  1197


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