BAC Information

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BAC

Clone NameB6Ng01-218K11
Chromosome13 (Build37)
Map Location 39,927,900 - 40,018,076
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc35b3, EG666867, LOC100041779, LOC382747, A230103O09Rik
Downstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105, Gcnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218K11.bB6Ng01-218K11.g
ACCGA034723GA034724
length1,1391,117
definitionB6Ng01-218K11.b B6Ng01-218K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,927,900 - 39,929,051)(40,016,957 - 40,018,076)
sequence
gaattccacacagtacctacagagatcaaaagacagtgcgaggtgccctg
gaattatagattgtaactgtgaactgttcaaagtaggtactaggaatcaa
atcaggagcctgtggaagaacaagcattcaagttctgagtcatctctaca
gctccattctgatatgctaaaatttaaccatttagcactactttccacac
catctcccatcttaagaataccctaccttcataagttccatttattggta
gtatcaatagtcatagattggtatttaccttcaataataatattctcctc
agcatctagagaattcctactaatactccttgagacatcctttcttccac
gtaacatctatagccaccttcatttagtcaatgtgctgtatttcatcttc
tcttacagcatctgggaccttcactaaattgatggtattttggccattgt
caaacagcccaaattgctcacttcttgatgtttcaccaaagacaacaaag
gaagagaagtcaatggaattctggagccaagcttatctcaaatttctaaa
acctgacttgttttagaataataatccaattaaagatttatttaaaaaaa
tttctctgtggcagcattgatgagagcaacaaaaatattgcctccagcct
gggctacagagtgaattccaggacagccagggctacacagagaaaccctg
tctcaaaaaaacccataaatatatatatatatatatatatatatatatat
atatatatatagcctctattataggaaatatcttcccgttgtcctttgac
atcttactgtctttaatgtcatacatcagcatggctcataaaaacaaaaa
ggcgttgtttaaacgggacaggttaacacccattaataagcagaaatgtt
tctttatacaaaatcgtatttggtccattttgactgaataacatttgcat
atatgtaaatacatagttaaatatagataactttttctgaatgtattata
tacatatttatatgtatgcatattatgcagatagtgccacgaatctgtct
ataaaactctttctgtgaattttagagacgttagtctcttaaacagcttc
gctgctgtgttcaggcaaggctgcaaagccaccttctac

gaattcaggtctgacttgtctttgccatactctgctaattccccgacaag
gcttgccacaataattgagtttccaataacattatgattatttccacatg
ataatttaattgtgggtattttttaatattgtaatattgtagatttgtga
ttattatgcatttgcatgcagattttcatggtgacttggagcacatccct
acatttataacttaattttatatattattgcatatatatttggggatgaa
ctcattaatgcaaataaaaaaatggaggtctgtttagtcgctcagctttc
attataaatggctgagagccttgctcattttttataacagtcttaacaat
actgtgaataaacccaacagaaccttaattcaagaatggattcattaaaa
agaatggtaatagctatgataattacaaattgtagcatatttgttcaacc
taattgctatataagatactatatattattctatacagaatgcaaaagtt
ccacgtgtgggttccattgactgtgtcctccgagctgtttgctgtgaagg
aggtagagatggtgactcacaaatgcatccctggtaagtaatggaatact
taaagaaaacacaatcttagcgagactcatgctgtgcatcctgagaagca
gaaatgcacacccaggtacagaaactcactccacccaaaagctcacgcca
gagtttaaggtagaaaaatcgaggataatatatttttttaaaaaaagtgt
tattcctgggcatatatccagaagatgttccaactggtaagaaggacaca
tgctccactatgttcatagcagccttatttataatagccagaagctggaa
agaacccagatgcccctcaacagaggaatggatacagaaatgtgggtaca
tttacacaatggagcactacttagctattgaaaagaatgaattttatgaa
tccctaggcaaatggatggacctggagggcatcatcctgagtgaggtaac
ccaatcaccagagaactcacatgatatgtattcactgataagtgatatta
gccagaaaccttagaataccccagatgcaggattccattggcaacacatg
aaactcaggagagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_39927900_39929051
seq2: B6Ng01-218K11.b_41_1179

seq1  GAATTCCACACAGTACCTACAGAGATCAAAAGACAGTGCGAGGTGCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAGTACCTACAGAGATCAAAAGACAGTGCGAGGTGCCCTG  50

seq1  GAATTATAGATTGTAACTGTGAACTGTTCAAAGTAGGTACTAGGAATCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATAGATTGTAACTGTGAACTGTTCAAAGTAGGTACTAGGAATCAA  100

seq1  ATCAGGAGCCTGTGGAAGAACAAGCATTCAAGTTCTGAGTCATCTCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGCCTGTGGAAGAACAAGCATTCAAGTTCTGAGTCATCTCTACA  150

seq1  GCTCCATTCTGATATGCTAAAATTTAACCATTTAGCACTACTTTCCACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTCTGATATGCTAAAATTTAACCATTTAGCACTACTTTCCACAC  200

seq1  CATCTCCCATCTTAAGAATACCCTACCTTCATAAGTTCCATTTATTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCATCTTAAGAATACCCTACCTTCATAAGTTCCATTTATTGGTA  250

seq1  GTATCAATAGTCATAGATTGGTATTTACCTTCAATAATAATATTCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAATAGTCATAGATTGGTATTTACCTTCAATAATAATATTCTCCTC  300

seq1  AGCATCTAGAGAATTCCTACTAATACTCCTTGAGACATCCTTTCTTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAGAGAATTCCTACTAATACTCCTTGAGACATCCTTTCTTCCAC  350

seq1  GTAACATCTATAGCCACCTTCATTTAGTCAATGTGCTGTATTTCATCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATCTATAGCCACCTTCATTTAGTCAATGTGCTGTATTTCATCTTC  400

seq1  TCTTACAGCATCTGGGACCTTCACTAAATTGATGGTATTTTGGCCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGCATCTGGGACCTTCACTAAATTGATGGTATTTTGGCCATTGT  450

seq1  CAAACAGCCCAAATTGCTCACTTCTTGATGTTTCACCAAAGACAACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCCCAAATTGCTCACTTCTTGATGTTTCACCAAAGACAACAAAG  500

seq1  GAAGAGAAGTCAATGGAATTCTGGAGCCAAGCTTATCTCAAATTTCTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAGTCAATGGAATTCTGGAGCCAAGCTTATCTCAAATTTCTAAA  550

seq1  ACCTGACTTGTTTTAGAATAATAATCCAATTAAAGATTTATTTAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGACTTGTTTTAGAATAATAATCCAATTAAAGATTTATTTAAAAAAA  600

seq1  TTTCTCTGTGGCAGCATTGATGAGAGCAACAAAAATATTGCCTCCAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTGGCAGCATTGATGAGAGCAACAAAAATATTGCCTCCAGCCT  650

seq1  GGGCTACAGAGTGAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACAGAGTGAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  700

seq1  TCTCAAAAAAACCCATAAATATATATATATATATATATATATATATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAAACCCATAAATATATATATATATATATATATATATATATAT  750

seq1  ATATATATATAGCCTCTATTATAGGAAATATCTTCCCGTTGTCCTTTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATAGCCTCTATTATAGGAAATATCTTCCCGTTGTCCTTTGAC  800

seq1  ATCTTACTGTCTTTAATGTCATACATCAGCATGGCTCATAAAAACAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTGTCTTTAATGTCATACATCAGCATGGCTCATAAAAACAAAAA  850

seq1  GGCGTTG-TTAAACGGGACAGGTTAACACCCATTAATAAGCAGAAATGTT  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTGTTTAAACGGGACAGGTTAACACCCATTAATAAGCAGAAATGTT  900

seq1  TCTTTATACAAAATCGTATTTGGTCCATTTTGACTGAATAACATTTGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATACAAAATCGTATTTGGTCCATTTTGACTGAATAACATTTGCAT  950

seq1  ATATGTAAATACATAGTTAAATATAGATAACTTTTTCTGAATGTAATTAT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATATGTAAATACATAGTTAAATATAGATAACTTTTTCTGAATGT-ATTAT  999

seq1  ATACATATTTTATATGTATGCATATTTTATGCAGATAGGTGCACGTAATC  1049
      ||||||| ||||||||||||||||  ||||||||||||   |||| ||||
seq2  ATACATA-TTTATATGTATGCATA--TTATGCAGATAGTGCCACG-AATC  1045

seq1  TGTCTATAAAAACCTCTTTCTGTGAAATTTTAAGAGACGTTAAGTCTCCT  1099
      |||||||||||  |||||||||||||  ||| ||||||||| |||||| |
seq2  TGTCTATAAAA--CTCTTTCTGTGAA--TTTTAGAGACGTT-AGTCTCTT  1090

seq1  AAACCAGCCTTCGCTGCTTGTGTTCAGCCAAAGCCTGCAAAGCCACCTTC  1149
      ||| ||| ||||||||| ||||||||| | ||| ||||||||||||||||
seq2  AAA-CAG-CTTCGCTGC-TGTGTTCAGGC-AAGGCTGCAAAGCCACCTTC  1136

seq1  TAC  1152
      |||
seq2  TAC  1139


seq1: chr13_40016957_40018076
seq2: B6Ng01-218K11.g_66_1182 (reverse)

seq1  TCTT-TCTCCTTGAGTTTCATGTGTTTTGCAAATTGTATCTTGCATCTTG  49
      |||| ||||| |||||||||||||  |||| ||| | ||| ||||||| |
seq2  TCTTCTCTCC-TGAGTTTCATGTG--TTGCCAATGGAATCCTGCATCTGG  47

seq1  GGTATTCTAA-GTTTCTGGGCTAATATCCACTTATCAGTGAATACATATC  98
      |||||||||| |||||| ||||||||| ||||||||||||||||||||||
seq2  GGTATTCTAAGGTTTCT-GGCTAATAT-CACTTATCAGTGAATACATATC  95

seq1  ATGTGAGTTCTCTTGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCA  148
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGTTCTCTGGTGATTGGGTTACCTCACTCAGGATGATGCCCTCCA  145

seq1  GGTCCATCCATTTGCCTAGGGATTTCAT-AAATTCATTCTTTTCAATAGC  197
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  GGTCCATCCATTTGCCTAGGGA-TTCATAAAATTCATTCTTTTCAATAGC  194

seq1  TAAGTAGTGCTCCATTGTGTAAATGTA-CCACATTTTCTGTATCCATTCC  246
      ||||||||||||||||||||||||||| ||||| ||||||||||||||||
seq2  TAAGTAGTGCTCCATTGTGTAAATGTACCCACA-TTTCTGTATCCATTCC  243

seq1  TCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAA  293

seq1  GGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGAACAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTATGAACATAGTGGAGCATGTGTCCTTCTTACCAGTTGGAACAT  343

seq1  CTTCTGGATATATGCCCAGGAATAACACTTTTTTTAAAAAAATATATTAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGATATATGCCCAGGAATAACACTTTTTTTAAAAAAATATATTAT  393

seq1  CCTCGATTTTTCTACCTTAAACTCTGGCGTGAGCTTTTGGGTGGAGTGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGATTTTTCTACCTTAAACTCTGGCGTGAGCTTTTGGGTGGAGTGAG  443

seq1  TTTCTGTACCTGGGTGTGCATTTCTGCTTCTCAGGATGCACAGCATGAGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTACCTGGGTGTGCATTTCTGCTTCTCAGGATGCACAGCATGAGT  493

seq1  CTCGCTAAGATTGTGTTTTCTTTAAGTATTCCATTACTTACCAGGGATGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTAAGATTGTGTTTTCTTTAAGTATTCCATTACTTACCAGGGATGC  543

seq1  ATTTGTGAGTCACCATCTCTACCTCCTTCACAGCAAACAGCTCGGAGGAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGAGTCACCATCTCTACCTCCTTCACAGCAAACAGCTCGGAGGAC  593

seq1  ACAGTCAATGGAACCCACACGTGGAACTTTTGCATTCTGTATAGAATAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAATGGAACCCACACGTGGAACTTTTGCATTCTGTATAGAATAAT  643

seq1  ATATAGTATCTTATATAGCAATTAGGTTGAACAAATATGCTACAATTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTATCTTATATAGCAATTAGGTTGAACAAATATGCTACAATTTGT  693

seq1  AATTATCATAGCTATTACCATTCTTTTTAATGAATCCATTCTTGAATTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCATAGCTATTACCATTCTTTTTAATGAATCCATTCTTGAATTAA  743

seq1  GGTTCTGTTGGGTTTATTCACAGTATTGTTAAGACTGTTATAAAAAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGTTGGGTTTATTCACAGTATTGTTAAGACTGTTATAAAAAATGA  793

seq1  GCAAGGCTCTCAGCCATTTATAATGAAAGCTGAGCGACTAAACAGACCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTCTCAGCCATTTATAATGAAAGCTGAGCGACTAAACAGACCTC  843

seq1  CATTTTTTTATTTGCATTAATGAGTTCATCCCCAAATATATATGCAATAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTATTTGCATTAATGAGTTCATCCCCAAATATATATGCAATAA  893

seq1  TATATAAAATTAAGTTATAAATGTAGGGATGTGCTCCAAGTCACCATGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATTAAGTTATAAATGTAGGGATGTGCTCCAAGTCACCATGAA  943

seq1  AATCTGCATGCAAATGCATAATAATCACAAATCTACAATATTACAATATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCATGCAAATGCATAATAATCACAAATCTACAATATTACAATATT  993

seq1  AAAAAATACCCACAATTAAATTATCATGTGGAAATAATCATAATGTTATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACCCACAATTAAATTATCATGTGGAAATAATCATAATGTTATT  1043

seq1  GGAAACTCAATTATTGTGGCAAGCCTTGTCGGGGAATTAGCAGAGTATGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCAATTATTGTGGCAAGCCTTGTCGGGGAATTAGCAGAGTATGG  1093

seq1  CAAAGACAAGTCAGACCTGAATTC  1120
      ||||||||||||||||||||||||
seq2  CAAAGACAAGTCAGACCTGAATTC  1117


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