BAC Information

Click to search

BAC

Clone NameB6Ng01-219N20
Chromosome13 (Build37)
Map Location 79,425,412 - 79,426,381
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042683, LOC622365, LOC100043052, EG666883
Downstream geneLOC666925, LOC382780, EG666933
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219N20.bB6Ng01-219N20.g
ACCGA035578GA035579
length1,205973
definitionB6Ng01-219N20.b B6Ng01-219N20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacataataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatctcggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtggtaaaaactgca
tggtactggtataaagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaatggtgctggc
acaactgggttgttatcatgtagaagaatgcgaatcgatccatacttatc
tcttgtactaggccaaatctaacggatcaaagaacttcacataaaaccag
agacactgaaacttatagaggagaagtggggaaagcctggagaattggtc
acaggcaaaaatcctgaaccgaacagcatgcttgtgctgtaagatcagaa
tgacatggacctaatgaactcaagtttctggcaaggcaaaagagaaccac
ggtgc

gaattcaagaaaaagcaaagaattcagtttcatctgtttgatggtacagg
gacctatgcaaataagctcatatacactaaaaggtttgtcattaacatgt
ctgacacagaactatcctctctcccaaaattaaatgcaatagatactatg
agagtttttaagtttgttggccaaaggtgaaaagttcagcagctttatta
aatctagttatgaaactctagtgggaatttatccagaaatctattgtgca
atggaaaattagagaaagaaaaacaaagaaagaataacaggataaaaatt
taaaacaaacaaaaacctgaacgagcgctggggtttcacgacacagttgt
ttactgaactgatatatctaaaagctatatctatctatttatatttatcc
actggccataattatgaattgaaaaaagaaaatgtacttcagatacttca
gagaaggcagtgaccactgtctcaataactgctgcaaagtctgtgtacat
cttcaaagcttcatatggtttgtttaaaatttgaattggacatgggaagc
catcgttacatcagaacagaggctttaattctcatttgagttaataaaac
aagcctttgagcaatgttttccttaatatgagtgatcctaaaatcctagg
taaccatttctttctcctgttgtaagtaactatactgctttaagacaata
ctattattttataaatatgttaacataaagatggccacctaaatacaaaa
aagaacttttctttggtttttgttggttggttggctttgttcttgtttgt
ttgacttttgtttttcctttctgacaagctgttgacaaggctggtttcaa
aatcatagagatctatcttactctgcttcctgagagcactggaaacagag
ttagtctttaagcactcaagcctatatatatatatatatatatgatatat
atgtatatagagtatatgtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_79425412_79426381
seq2: B6Ng01-219N20.g_65_1037

seq1  GAATTCAAGAAAAAGCAAAGAATTCAGTTTCATCTGTTTGATGGTACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAAAAAGCAAAGAATTCAGTTTCATCTGTTTGATGGTACAGG  50

seq1  GACCTATGCAAATAAGCTCATATACACTAAAAGGTTTGTCATTAACATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATGCAAATAAGCTCATATACACTAAAAGGTTTGTCATTAACATGT  100

seq1  CTGACACAGAACTATCCTCTCTCCCAAAATTAAATGCAATAGATACTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACAGAACTATCCTCTCTCCCAAAATTAAATGCAATAGATACTATG  150

seq1  AGAGTTTTTAAGTTTGTTGGCCAAAGGTGAAAAGTTCAGCAGCTTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTTAAGTTTGTTGGCCAAAGGTGAAAAGTTCAGCAGCTTTATTA  200

seq1  AATCTAGTTATGAAACTCTAGTGGGAATTTATCCAGAAATCTATTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGTTATGAAACTCTAGTGGGAATTTATCCAGAAATCTATTGTGCA  250

seq1  ATGGAAAATTAGAGAAAGAAAAACAAAGAAAGAATAACAGGATAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAATTAGAGAAAGAAAAACAAAGAAAGAATAACAGGATAAAAATT  300

seq1  TAAAACAAACAAAAACCTGAACGAGCGCTGGGGTTTCACGACACAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAACAAAAACCTGAACGAGCGCTGGGGTTTCACGACACAGTTGT  350

seq1  TTACTGAACTGATATATCTAAAAGCTATATCTATCTATTTATATTTATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAACTGATATATCTAAAAGCTATATCTATCTATTTATATTTATCC  400

seq1  ACTGGCCATAATTATGAATTGAAAAAAGAAAATGTACTTCAGATACTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCCATAATTATGAATTGAAAAAAGAAAATGTACTTCAGATACTTCA  450

seq1  GAGAAGGCAGTGACCACTGTCTCAATAACTGCTGCAAAGTCTGTGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGTGACCACTGTCTCAATAACTGCTGCAAAGTCTGTGTACAT  500

seq1  CTTCAAAGCTTCATATGGTTTGTTTAAAATTTGAATTGGACATGGGAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGCTTCATATGGTTTGTTTAAAATTTGAATTGGACATGGGAAGC  550

seq1  CATCGTTACATCAGAACAGAGGCTTTAATTCTCATTTGAGTTAATAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTTACATCAGAACAGAGGCTTTAATTCTCATTTGAGTTAATAAAAC  600

seq1  AAGCCTTTGAGCAATGTTTTCCTTAATATGAGTGATCCTAAAATCCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTTGAGCAATGTTTTCCTTAATATGAGTGATCCTAAAATCCTAGG  650

seq1  TAACCATTTCTTTCTCCTGTTGTAAGTAACTATACTGCTTTAAGACAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTTCTTTCTCCTGTTGTAAGTAACTATACTGCTTTAAGACAATA  700

seq1  CTATTATTTTATAAATATGTTAACATAAAGATGGCCACCTAAATACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTTATAAATATGTTAACATAAAGATGGCCACCTAAATACAAAA  750

seq1  AAGAACTTTTCTTTGGTTTTTGTTGGTTGGTTGGCTTTGTTCTTGTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTTTCTTTGGTTTTTGTTGGTTGGTTGGCTTTGTTCTTGTTTGT  800

seq1  TTGACTTTTGTTTTTCCTTTCTGACAAGCTGTTGACAAGGCTGGTTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTTTGTTTTTCCTTTCTGACAAGCTGTTGACAAGGCTGGTTTCAA  850

seq1  AATCATAGAGATCTATCTTACTCTGCTTCCTGAGAGCAACTGGAAACAGA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATCATAGAGATCTATCTTACTCTGCTTCCTGAGAGC-ACTGGAAACAGA  899

seq1  GTTAGTCTTTAAGCACTCAAGCATATATATATATATATATATAT-ATATA  949
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  GTTAGTCTTTAAGCACTCAAGCCTATATATATATATATATATATGATATA  949

seq1  TATATATATA---TATATATATAT  970
      ||| ||||||   ||||| |||||
seq2  TATGTATATAGAGTATATGTATAT  973


| Home | SequenceCutter | Blast | Download |