BAC Information

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BAC

Clone NameB6Ng01-221H15
Chromosome13 (Build37)
Map Location 109,156,999 - 109,310,286
singlet/doubletdoublet
Overlap geneDepdc1b
Upstream geneApoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524
Downstream genePde4d, EG668144, LOC621663, LOC100040968
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221H15.bB6Ng01-221H15.g
ACCGA036761GA036762
length1,1281,072
definitionB6Ng01-221H15.b B6Ng01-221H15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,156,999 - 109,158,114)(109,309,226 - 109,310,286)
sequence
gaattctctttctcgttttggagttagggtgttatgtagccgaagctaga
cagctgagggccacctccctcgaccttctgaatactgcagtcacaggcat
gcattgccgtgtgatagtgagttatatggtgctgaccattgatcgcaggg
cctggtgcatgctaggcaggcactctgccagcagagctaccttctcagcc
ccacatttgcatttctggcttgtctcttcagagtggtgtcagtgagtaag
agtgtctggaagaatccttattattattcatttttcttttaatgagataa
ctttaaatgttgaaagttttttttttttaaatcacttatccttcaagatg
acttatgagtctgtcaaaaacaaagaagcaccacctttgttttgtttaaa
atttgcaacaagacaagttctgttccctatagtgccctgagggctacagt
catcggattgattatgtctggctgtggcaaggttttgctatgtggtccag
gctggccttgaacttgagaccctcttccctcagctacaggtttggtgtca
tcagacctgacccaagactgattttaaaatgcccttgcttcaggtagggg
tcagattagaacgagttcagctcttggagttgatcttttaacttgaattt
tgatgttgtggattggccagaaccaagtgatctttggatgtgagaaaatg
gtacagtattttggggacataataagctaagtttcagtctgaggctctga
gccactggcaggtacaagaagggatcatcgtctgttagaggagaaacgtt
agtaagcgagcctctggacaggactagtgtttgccttggcagacgggagc
tctttcacctgtctggcaccttccatcagcatggagggcagcagtgcaca
taaatcagtctggaaacgtcacgagtgcttgggttaatattaagctgtaa
cgttaggttccccttgcaaggactgacaggcgtctttgaaacgctgctta
aagcttgtccaagatcctcttggtgatgcagggttatcaccctgagcctg
gcgccttaaacgactttttagtttgcttaattttcctggaaaggaggaaa
ggtttcataatttcctcgggtttgttca
gaattcagtttatggaattttattgaaagaaaattaaaaggttctagggg
ggatttttttaaaagcaactatttgaaaactatttttcattcattgagta
gatatctatgttgttttatatttgtgatatgaatgtgttagaccctggga
tttcagagtagacaggctttagcttccagaaaacagaaaggctttgaacc
aaatttatgttagttccagcactggctaaagcccatgcagaaacaaagga
ggggtatggacaagagttttgcagataatccccagggaaacggagcagtt
tctaccagtaagaatccacaccaagtctataaagaaaattgtagtgaatg
gctccattgtgataagtcatgttaacattgttaattttctccaaactatt
tttttagacaagaaagtaagacattgaaataaccagacccatgggaggga
aaggtagggagagagaaacattccagaaacactttgcacaataggacagg
ttccttaaatggtagcaatctttgtaatcatagtgttgagttatttttac
tggccttaggaagaggcatagcatatggataaaaaatttaagtgttaaat
tatatctctgatatttttctaaagaaaactatgatatttctcatttaact
tactattttattataagagttatattttatgaagacatagtaaacaattt
ggaaatagagaaatttttaaaaatagaaatgaaaggtacgacagaaaagt
gtttagttgatgagtgctgtgaatttgaatgtttatttcttccaaattca
tatgttgccatcgaatgcctaacgtgatgggcatttggagatgagacctt
taaagaggtaattacatcttaagcagaacctttgcttaaggggcattgcc
cttattaagaatccagagagttagcttttctctttaaaactgggacgata
caaccatatgtcatctatctgcagcctagaaggtggtccctgccagatcc
tatcatgcttgtccccttgttcaccggaaaagtcagagaaacaaatttct
ttggcatataagccacccagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_109156999_109158114
seq2: B6Ng01-221H15.b_44_1171

seq1  GAATTCTCTTTCTCGTTTTGGAGTTAGGGTGTTATGTAGCCGAAGCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTCGTTTTGGAGTTAGGGTGTTATGTAGCCGAAGCTAGA  50

seq1  CAGCTGAGGGCCACCTCCCTCGACCTTCTGAATACTGCAGTCACAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAGGGCCACCTCCCTCGACCTTCTGAATACTGCAGTCACAGGCAT  100

seq1  GCATTGCCGTGTGATAGTGAGTTATATGGTGCTGACCATTGATCGCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCCGTGTGATAGTGAGTTATATGGTGCTGACCATTGATCGCAGGG  150

seq1  CCTGGTGCATGCTAGGCAGGCACTCTGCCAGCAGAGCTACCTTCTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGCATGCTAGGCAGGCACTCTGCCAGCAGAGCTACCTTCTCAGCC  200

seq1  CCACATTTGCATTTCTGGCTTGTCTCTTCAGAGTGGTGTCAGTGAGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTGCATTTCTGGCTTGTCTCTTCAGAGTGGTGTCAGTGAGTAAG  250

seq1  AGTGTCTGGAAGAATCCTTATTATTATTCATTTTTCTTTTAATGAGATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGAAGAATCCTTATTATTATTCATTTTTCTTTTAATGAGATAA  300

seq1  CTTTAAATGTTGAAAGTTTTTTTTTTTTAAATCACTTATCCTTCAAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATGTTGAAAGTTTTTTTTTTTTAAATCACTTATCCTTCAAGATG  350

seq1  ACTTATGAGTCTGTCAAAAACAAAGAAGCACCACCTTTGTTTTGTTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGAGTCTGTCAAAAACAAAGAAGCACCACCTTTGTTTTGTTTAAA  400

seq1  ATTTGCAACAAGACAAGTTCTGTTCCCTATAGTGCCCTGAGGGCTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAACAAGACAAGTTCTGTTCCCTATAGTGCCCTGAGGGCTACAGT  450

seq1  CATCGGATTGATTATGTCTGGCTGTGGCAAGGTTTTGCTATGTGGTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGATTGATTATGTCTGGCTGTGGCAAGGTTTTGCTATGTGGTCCAG  500

seq1  GCTGGCCTTGAACTTGAGACCCTCTTCCCTCAGCTACAGG-TTGGTGTCA  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTGGCCTTGAACTTGAGACCCTCTTCCCTCAGCTACAGGTTTGGTGTCA  550

seq1  TCAGACCTGACCCAAGACTGATTTTAAAATGCCCTTGCTTCAGGTAGGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTGACCCAAGACTGATTTTAAAATGCCCTTGCTTCAGGTAGGGG  600

seq1  TCAGATTAGAACGAGTTCAGCTCTTGGAGTTGATCTTTTAACTTGAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAGAACGAGTTCAGCTCTTGGAGTTGATCTTTTAACTTGAATTT  650

seq1  TGATGTTGTGGATTGGCCAGAACCAAGTGATCTTTGGATGTGAGAAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGTGGATTGGCCAGAACCAAGTGATCTTTGGATGTGAGAAAATG  700

seq1  GTACAGTATTTTGGGGACATAATAAGCTAAG-TTCAGTCTGAGGCTCTGA  748
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTACAGTATTTTGGGGACATAATAAGCTAAGTTTCAGTCTGAGGCTCTGA  750

seq1  GCCACTGGCAGGTACAAGAAGGGATCATCGTCTGTTAGAGGAGAAACGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGGCAGGTACAAGAAGGGATCATCGTCTGTTAGAGGAGAAACGTT  800

seq1  AGTAAGCGAGCCTCTGGACAGGACTAGTGTTTGCCTTGGCAGACGGGAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCGAGCCTCTGGACAGGACTAGTGTTTGCCTTGGCAGACGGGAGC  850

seq1  TC-TTCACCTGTCCTGGCACC-TCCATCAGGCATGGAGGGCAGCAGTGCA  896
      || ||||||||| |||||||| ||||||| ||||||||||||||||||||
seq2  TCTTTCACCTGT-CTGGCACCTTCCATCA-GCATGGAGGGCAGCAGTGCA  898

seq1  CAGAAATCAGTCTGGAAACGTCACGAGTTGCTGGGTTAATATTAAGCTGT  946
      || |||||||||||||||||||||||||   |||||||||||||||||||
seq2  CATAAATCAGTCTGGAAACGTCACGAGTGCTTGGGTTAATATTAAGCTGT  948

seq1  AACGTTAGGTT-CCCTTGCAAGGACGGACAGGCGTCTTTGAAACGCTGC-  994
      ||||||||||| ||||||||||||| ||||||||||||||||||||||| 
seq2  AACGTTAGGTTCCCCTTGCAAGGACTGACAGGCGTCTTTGAAACGCTGCT  998

seq1  TAAAGC-TGTCC-AGATCCTC-TGGTGTAGCAGGGTTATCACCCTGAG-C  1040
      |||||| ||||| |||||||| |||||  ||||||||||||||||||| |
seq2  TAAAGCTTGTCCAAGATCCTCTTGGTGATGCAGGGTTATCACCCTGAGCC  1048

seq1  TGGCG-CTTAGACGACTTTTAGTTTTGCTAAGTTTTTCTGG-AAGGAGGA  1088
      ||||| |||| |||||||||   |||||| | |||| |||| ||||||||
seq2  TGGCGCCTTAAACGACTTTTTAGTTTGCTTAATTTTCCTGGAAAGGAGGA  1098

seq1  AAGGTTTCATAATT--CTCGGGTTTGTTCA  1116
      ||||||||||||||  ||||||||||||||
seq2  AAGGTTTCATAATTTCCTCGGGTTTGTTCA  1128

seq1: chr13_109309226_109310286
seq2: B6Ng01-221H15.g_65_1136 (reverse)

seq1  TCCTGGGTGGCTTATATGCAAAAGAAATTTGTTTCTTCTTAC-TTTCCCG  49
      ||||||||||||||||||| ||||||||||||||| ||| || ||||| |
seq2  TCCTGGGTGGCTTATATGCCAAAGAAATTTGTTTC-TCTGACTTTTCCGG  49

seq1  TGAAC-AGGGTGCCAGCATGGTTGGGTTCTGGCAAGGGCCACCTTCTAGG  98
      ||||| ||||  | ||||| | | || ||||||| || ||||||||||||
seq2  TGAACAAGGGGACAAGCAT-GATAGGATCTGGCAGGGACCACCTTCTAGG  98

seq1  CTGCAGATGGATGACATATTGTTGTATCGTCCCAGTTTTAAAAGAG-AAA  147
      |||||||| |||||||||| ||||||||||||||||||| |||||| |||
seq2  CTGCAGATAGATGACATATGGTTGTATCGTCCCAGTTTT-AAAGAGAAAA  147

seq1  GCTAACTCTCTGGATTCTT-ATAA-GGCAATG-CCCTTTAGC-AAGGTTC  193
      ||||||||||||||||||| |||| ||||||| ||||| ||| |||||||
seq2  GCTAACTCTCTGGATTCTTAATAAGGGCAATGCCCCTTAAGCAAAGGTTC  197

seq1  TGCTTTAAGATGTAATTACCTC-TTAAAGGTCTCATCTCCAAATG-CCAT  241
      ||| |||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TGC-TTAAGATGTAATTACCTCTTTAAAGGTCTCATCTCCAAATGCCCAT  246

seq1  CACGTTAGGCATTCGATGGCAACATATGAATTTGGAAGAAATAAACATTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTAGGCATTCGATGGCAACATATGAATTTGGAAGAAATAAACATTC  296

seq1  -AATTCACAGCACTCATCAACT-AACACTTTTCTGTCGTACC-TTCATTT  338
       ||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  AAATTCACAGCACTCATCAACTAAACACTTTTCTGTCGTACCTTTCATTT  346

seq1  CTATTTTT-AAAATTTCTCTATTTCC-AATTGTTTACTATGTCTTCATAA  386
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  CTATTTTTAAAAATTTCTCTATTTCCAAATTGTTTACTATGTCTTCATAA  396

seq1  AATATAACTCTTATAAT-AAATAGTAAGTTAAATGAGAAATATCATAGTT  435
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATATAACTCTTATAATAAAATAGTAAGTTAAATGAGAAATATCATAGTT  446

seq1  TTCTTTAGAAAAATATCAGAGATATAATTTAACACTTAAATTTTTTATCC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAGAAAAATATCAGAGATATAATTTAACACTTAAATTTTTTATCC  496

seq1  ATATGCTATGCCTCTTCCTAAGGCCAGTAAAAATAACTCAACACTATGAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCTATGCCTCTTCCTAAGGCCAGTAAAAATAACTCAACACTATGAT  546

seq1  TACAAAGATTGCTACCATTTAAGGAACCTGTCCTATTGTGCAAAGTGTTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGATTGCTACCATTTAAGGAACCTGTCCTATTGTGCAAAGTGTTT  596

seq1  CTGGAATGTTTCTCTCTCCCTACCTTTCCCTCCCATGGGTCTGGTTATTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAATGTTTCTCTCTCCCTACCTTTCCCTCCCATGGGTCTGGTTATTT  646

seq1  CAATGTCTTACTTTCTTGTCTAAAAAAATAGTTTGGAGAAAATTAACAAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTACTTTCTTGTCTAAAAAAATAGTTTGGAGAAAATTAACAAT  696

seq1  GTTAACATGACTTATCACAATGGAGCCATTCACTACAATTTTCTTTATAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATGACTTATCACAATGGAGCCATTCACTACAATTTTCTTTATAG  746

seq1  ACTTGGTGTGGATTCTTACTGGTAGAAACTGCTCCGTTTCCCTGGGGATT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTGTGGATTCTTACTGGTAGAAACTGCTCCGTTTCCCTGGGGATT  796

seq1  ATCTGCAAAACTCTTGTCCATACCCCTCCTTTGTTTCTGCATGGGCTTTA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAAACTCTTGTCCATACCCCTCCTTTGTTTCTGCATGGGCTTTA  846

seq1  GCCAGTGCTGGAACTAACATAAATTTGGTTCAAAGCCTTTCTGTTTTCTG  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGCTGGAACTAACATAAATTTGGTTCAAAGCCTTTCTGTTTTCTG  896

seq1  GAAGCTAAAGCCTGTCTACTCTGAAATCCCAGGGTCTAACACATTCATAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAAAGCCTGTCTACTCTGAAATCCCAGGGTCTAACACATTCATAT  946

seq1  CACAAATATAAAACAACATAGATATCTACTCAATGAATGAAAAATAGTTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATAAAACAACATAGATATCTACTCAATGAATGAAAAATAGTTT  996

seq1  TCAAATAGTTGCTTTTAAAAAAATCCCCCCTAGAACCTTTTAATTTTCTT  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGTTGCTTTTAAAAAAATCCCCCCTAGAACCTTTTAATTTTCTT  1046

seq1  TCAATAAAATTCCATAAACTGAATTC  1061
      ||||||||||||||||||||||||||
seq2  TCAATAAAATTCCATAAACTGAATTC  1072