BAC Information

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BAC

Clone NameB6Ng01-221I18
Chromosome13 (Build37)
Map Location 62,642,761 - 62,768,471
singlet/doubletdoublet
Overlap gene6720457D02Rik, LOC100041493
Upstream geneCtsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, EG665503
Downstream geneLOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221I18.bB6Ng01-221I18.g
ACCGA036809GA036810
length802795
definitionB6Ng01-221I18.b B6Ng01-221I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,642,761 - 62,643,549)(62,767,681 - 62,768,471)
sequence
gaattcaacatcccactctcaccaatgggcaagtcattgaaacggaaact
aaacagagacacagtgaaagcaacagaggttatgaacccaacagatttga
cagatatttacagaacattttacctaaaacaaaagaatacaccatcttct
cagtgcttcatggtaccttttctccaatcaaccatataattcgtcttaaa
gcaggccttaacagatacaagaagattgaaataatcccgcacatcctatc
agatcaccaaggcatgaggctgctgggtctggtttcactcagagaagatg
cacaaaaccctcaagagactgagtccccaggaagtttagagctttggttg
ggggtgggaggacatcctaggggagacaaggggataggtagtaggtatag
aatgtggaacagtctgagggtggatcagaaggggaataaaatctggagtg
taaaaaagaaagaaaaaaaaataaaaaagaaaaaaaatctctgaaaatac
aaagtatctagctttagttaaagctaaaagaggaaccaacttagagagac
tttgcattattctccatgtttttgctatccttaactcttcttttaggttc
tcatcccagattataaaagtgaacagttttaacaatggactgcacactac
tgggggattctggccagccacttatgcagatgggagatgaacatagcaga
gatatttccagactcattttcttaagtacaccaataccctgtagcatcag
gtcatttctgcactggcagaattccttatggaaaagtctcaggcgaggcc
ta
gaattctacacccctaagccccttaccccataaaaccccctagttttcga
gcctcggggtcgaatccactgtctcctgcgtgagatacatttggacctgg
agttctgtcattaaactgcctcatgtgtttacaacaaggaaggattctcg
tgtttctttaggttctctctctctcccgagacttgagtgggggtccccaa
aagggggtcttacagtgagcaataaccgctgcccctaacccgaattagct
gtggactgagaagcaggagaggaggtggtggccctccactgggctgggtg
aaaactaacagccacttgtgaggttcctaatacttcattatgggagctgg
atctgcaaaaagcatttggaacaatggatttgctgtagaaacatccttgg
caggatgccaaaatggaagagaataagtttcttggtatcttctagaattt
gtgcccttgccctttaagatccatttgtaattaattttgtgagggttgta
aactgtttctcacaaactgggtatcacaccaaatttaagctgtgatcaga
atagaatgtatgatgtaaaagattttccagtgcttaggaaatagtaactc
acacctagcagaatttactaagggatggactgtctttaaaacacccacat
accaggcgtggtggctcacacctttaatccctgcactccggaggcagagg
caagtggatttctgagtttcgagggccagccttggttctacagagtgagt
tccaggacagccagggctactcagagaaaccctgtctcaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62642761_62643549
seq2: B6Ng01-221I18.b_46_844

seq1  TTCAACATCCCACTCTCACCAATGGGCAAGTCATTGAAACGGAAACTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCCACTCTCACCAATGGGCAAGTCATTGAAACGGAAACTAAA  50

seq1  CAGAGACACAGTGAAAGCAACAGAGGTTATGAACCCAACAGATTTGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACAGTGAAAGCAACAGAGGTTATGAACCCAACAGATTTGACAG  100

seq1  ATATTTACAGAACATTTTACCTAAAACAAAAGAATACACCATCTTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAGAACATTTTACCTAAAACAAAAGAATACACCATCTTCTCAG  150

seq1  TGCTTCATGGTACCTTTTCTCCAATCAACCATATAATTCGTCTTAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGGTACCTTTTCTCCAATCAACCATATAATTCGTCTTAAAGCA  200

seq1  GGCCTTAACAGATACAAGAAGATTGAAATAATCCCGCACATCCTATCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTAACAGATACAAGAAGATTGAAATAATCCCGCACATCCTATCAGA  250

seq1  TCACCAAGGCATGAGGCTGCTGGGTCTGGTTTCACTCAGAGAAGATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGGCATGAGGCTGCTGGGTCTGGTTTCACTCAGAGAAGATGCAC  300

seq1  AAAACCCTCAAGAGACTGAGTCCCCAGGAAGTTTAGAGCTTTGGTTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCTCAAGAGACTGAGTCCCCAGGAAGTTTAGAGCTTTGGTTGGGG  350

seq1  GTGGGAGGACATCCTAGGGGAGACAAGGGGATAGGTAGTAGGTATAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGACATCCTAGGGGAGACAAGGGGATAGGTAGTAGGTATAGAAT  400

seq1  GTGGAACAGTCTGAGGGTGGATCAGAAGGGGAATAAAATCTGGAGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACAGTCTGAGGGTGGATCAGAAGGGGAATAAAATCTGGAGTGTAA  450

seq1  AAAAGAAAGAAAAAAAAATAAAAAAGAAAAAAAATCTCTGAAAATACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGAAAAAAAAATAAAAAAGAAAAAAAATCTCTGAAAATACAAA  500

seq1  GTATCTAGCTTTAGTTAAAGCTAAAAGAGGAACCAACTTAGAGAGACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTAGCTTTAGTTAAAGCTAAAAGAGGAACCAACTTAGAGAGACTTT  550

seq1  GCATTATTCTCCATG-TTTTGCTATCCTTAACTCTTC-TTTAGGTTCTCA  598
      ||||||||||||||| ||||||||||||||||||||| ||||||||||||
seq2  GCATTATTCTCCATGTTTTTGCTATCCTTAACTCTTCTTTTAGGTTCTCA  600

seq1  TCCCAGATTAT-AAAGTGAACAG-TTTAACAATGGACTGCACACTACTGG  646
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TCCCAGATTATAAAAGTGAACAGTTTTAACAATGGACTGCACACTACTGG  650

seq1  GG--ATCTGGCCAGCCACTTAGGCAGATGGGAGATGAACATAGCAGAGAT  694
      ||   |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGGATTCTGGCCAGCCACTTATGCAGATGGGAGATGAACATAGCAGAGAT  700

seq1  A-TTCCAGACTCA-TTTCTTAAGTACACCAATACCCTGAAGCATCAGGTC  742
      | ||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  ATTTCCAGACTCATTTTCTTAAGTACACCAATACCCTGTAGCATCAGGTC  750

seq1  A-TTCTGCACTGGCAG-AGTCCTAAGTGGAAAGTCTCAGGCGAGGCCAA  789
      | |||||||||||||| | |||| |  | |||||||||||||||||| |
seq2  ATTTCTGCACTGGCAGAATTCCTTATGGAAAAGTCTCAGGCGAGGCCTA  799

seq1: chr13_62767681_62768471
seq2: B6Ng01-221I18.g_66_860 (reverse)

seq1  TTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCA  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTTTGAGACAGGGTTTCTCTGAGTAGCCCTGGCTGTCCTGGAACTCA  50

seq1  CTCTGTAGA--CCAGGCTGG-CCTCG-AACTCAGAAATCCACTTGCCTCT  96
      |||||||||  | ||||||| ||||| |||||||||||||||||||||||
seq2  CTCTGTAGAACCAAGGCTGGCCCTCGAAACTCAGAAATCCACTTGCCTCT  100

seq1  GCCTCCGGAGTGCAGGGATTAAAGGTGTGAGCCACCACGCCTGGTATGTG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGGAGTGCAGGGATTAAAGGTGTGAGCCACCACGCCTGGTATGTG  150

seq1  GGTGTTTTAAAGACAGTCCATCCCTTAGTAAATTCTGCTAGGTGTGAGTT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTAAAGACAGTCCATCCCTTAGTAAATTCTGCTAGGTGTGAGTT  200

seq1  ACTATTTCCTAAGCACTGGAAAATCTTTTACATCATACATTCTATTCTGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCCTAAGCACTGGAAAATCTTTTACATCATACATTCTATTCTGA  250

seq1  TCACAGCTTAAATTTGGTGTGATACCCAGTTTGTGAGAAACAGTTTACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTTAAATTTGGTGTGATACCCAGTTTGTGAGAAACAGTTTACAA  300

seq1  CCCTCACAAAATTAATTACAAATGGATCTTAAAGGGCAAGGGCACAAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACAAAATTAATTACAAATGGATCTTAAAGGGCAAGGGCACAAATT  350

seq1  CTAGAAGATACCAAGAAACTTATTCTCTTCCATTTTGGCATCCTGCCAAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGATACCAAGAAACTTATTCTCTTCCATTTTGGCATCCTGCCAAG  400

seq1  GATGTTTCTACAGCAAATCCATTGTTCCAAATGCTTTTTGCAGATCCAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTCTACAGCAAATCCATTGTTCCAAATGCTTTTTGCAGATCCAGC  450

seq1  TCCCATAATGAAGTATTAGGAACCTCACAAGTGGCTGTTAGTTTTCACCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAATGAAGTATTAGGAACCTCACAAGTGGCTGTTAGTTTTCACCC  500

seq1  AGCCCAGTGGAGGGCCACCACCTCCTCTCCTGCTTCTCAGTCCACAGCTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGGAGGGCCACCACCTCCTCTCCTGCTTCTCAGTCCACAGCTA  550

seq1  ATTCGGGTTAGGGGCAGCGGTTATTGCTCACTGTAAGACCCCCTTTTGGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGGTTAGGGGCAGCGGTTATTGCTCACTGTAAGACCCCCTTTTGGG  600

seq1  GACCCCCACTCAAGTCTCGGGAGAGAGAGAGAACCTAAAGAAACACGAGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCACTCAAGTCTCGGGAGAGAGAGAGAACCTAAAGAAACACGAGA  650

seq1  ATCCTTCCTTGTTGTAAACACATGAGGCAGTTTAATGACAGAACTCCAGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCTTGTTGTAAACACATGAGGCAGTTTAATGACAGAACTCCAGG  700

seq1  TCCAAATGTATCTCACGCAGGAGACAGTGGATTCGACCCCGAGGCTCGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTATCTCACGCAGGAGACAGTGGATTCGACCCCGAGGCTCGAA  750

seq1  AACTAGGGGGTTTTATGGGGTAAGGGGCTTAGGGGTGTAGAATTC  791
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGGGGTTTTATGGGGTAAGGGGCTTAGGGGTGTAGAATTC  795