BAC Information

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BAC

Clone NameB6Ng01-222F12
Chromosome13 (Build37)
Map Location 21,359,839 - 21,487,546
singlet/doubletdoublet
Overlap geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27
Downstream genePgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222F12.bB6Ng01-222F12.g
ACCGA037390GA037391
length6761,146
definitionB6Ng01-222F12.b B6Ng01-222F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,359,839 - 21,360,514)(21,486,405 - 21,487,546)
sequence
gaattctttcccccgcttcccgaatgaagctgtaacagctcattcctagt
ttacattgcaaatgcaggttgtttcttcagaattatttgtcggaaatgcg
gcggggtgtttgtttagaagggatgctgtgtcagcagcatcttcagctgg
ggaacctcggagaggttcagtttcagggccggccgtgtgtacaggcacca
caggtcttgtcctggctcccgccggtgggagattttattttattttattt
tacgtggggtcaggtgaaagacaaagagaaaacatgagggagcagggctg
aggagggcagggcagtctgaaaaaggtttttctacagctgttgggacttc
tctacctcagaaggaatttttcctccagggcttgttacctctgtgtctgt
gttttgagtcaaatgtcacatagagtagaggaacaagtttttccactttt
agacctcaggtgggaaattataaaaagtcctttataaaagagcctttaaa
ggtcccaccgagatttgaactcagattgctggattcaaagtccagagtgc
taaccattacaccatgggacccacaaaagataatgaatatgtaaccagag
ttgtggaactttctatgcactgaaggtcaagcttcaattttgacaaggat
ttttttttaggggggaggtgggagga
gaattctatggttttcttagaagctagaatctaaaaaggttattttgggg
cttgcggttttatttttttactatccagatttatgggttccttgtttaaa
cctctggtagaaaagaggccaggtttaacttccacctctggcctgtttta
gcagacaatttcctttttcattccctagtgtttttgtattggagaactca
tggccttctaaccaaagaccaaggccaaggttctgcacttgggagttatt
tcctgacttttgtaacagtgagaagttgccagaattctctgaactttatc
ctgtataaaagatgtggaaaggctgagcagcagaagagaaaggcttggaa
actgacttagtgatctagaagcaaacctgcgtctggcaggacaggccatg
ccttaatgggtggtttcatgtagcttactggtttcactcactctttagac
taaactagaaataccatcctcagttttctgataagaaatttgcaggtgac
gggtttatatcaccattttcctaaagtggttcataaatctgtatgtgtat
aataagcattgaatgagctgtggaaatacttgcctaactttccattttag
ctttgccatttagtagcatgattttggataagttgtacccttatgaagga
attgtttctattaaatgagtacatatttgtagaatttggatacaatgcca
agctgataggaaatgtctttggaaatgtctaataagtagatagaaaataa
aactgaatgactgacttccaggttccagatgatgacgatgggcaggaact
cctttgctccaaggcagtgctgttgacatcagctcagggctcagaaagta
gccagatggagcccgtggagcctctgctgaagcaggagtcttttgggatc
cctgccctcagaagtcagaggttagtattactaggctttatgggtatttt
tggttttgggtttccccccctcccttcttaaaacattttataaacttgta
ttgcataaatttattagtcaagtttttaaacctgggtttacatgcagacg
ctgatgcctagagtggagtctcaaccagagcttctttttgtcgtagtcac
tctcatgtggggcacttgtggagagattggagttgacgcctactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21359839_21360514
seq2: B6Ng01-222F12.b_43_718

seq1  GAATTCTTTCCCCCGCTTCCCGAATGAAGCTGTAACAGCTCATTCCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCCGCTTCCCGAATGAAGCTGTAACAGCTCATTCCTAGT  50

seq1  TTACATTGCAAATGCAGGTTGTTTCTTCAGAATTATTTGTCGGAAATGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGCAAATGCAGGTTGTTTCTTCAGAATTATTTGTCGGAAATGCG  100

seq1  GCGGGGTGTTTGTTTAGAAGGGATGCTGTGTCAGCAGCATCTTCAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGTGTTTGTTTAGAAGGGATGCTGTGTCAGCAGCATCTTCAGCTGG  150

seq1  GGAACCTCGGAGAGGTTCAGTTTCAGGGCCGGCCGTGTGTACAGGCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTCGGAGAGGTTCAGTTTCAGGGCCGGCCGTGTGTACAGGCACCA  200

seq1  CAGGTCTTGTCCTGGCTCCCGCCGGTGGGAGATTTTATTTTATTTTATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTGTCCTGGCTCCCGCCGGTGGGAGATTTTATTTTATTTTATTT  250

seq1  TACGTGGGGTCAGGTGAAAGACAAAGAGAAAACATGAGGGAGCAGGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGGGGTCAGGTGAAAGACAAAGAGAAAACATGAGGGAGCAGGGCTG  300

seq1  AGGAGGGCAGGGCAGTCTGAAAAAGGTTTTTCTACAGCTGTTGGGACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAGGGCAGTCTGAAAAAGGTTTTTCTACAGCTGTTGGGACTTC  350

seq1  TCTACCTCAGAAGGAATTTTTCCTCCAGGGCTTGTTACCTCTGTGTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCAGAAGGAATTTTTCCTCCAGGGCTTGTTACCTCTGTGTCTGT  400

seq1  GTTTTGAGTCAAATGTCACATAGAGTAGAGGAACAAGTTTTTCCACTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTCAAATGTCACATAGAGTAGAGGAACAAGTTTTTCCACTTTT  450

seq1  AGACCTCAGGTGGGAAATTATAAAAAGTCCTTTATAAAAGAGCCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCAGGTGGGAAATTATAAAAAGTCCTTTATAAAAGAGCCTTTAAA  500

seq1  GGTCCCACCGAGATTTGAACTCAGATTGCTGGATTCAAAGTCCAGAGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACCGAGATTTGAACTCAGATTGCTGGATTCAAAGTCCAGAGTGC  550

seq1  TAACCATTACACCATGGGACCCACAAAAGATAATGAATATGTAACCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATTACACCATGGGACCCACAAAAGATAATGAATATGTAACCAGAG  600

seq1  TTGTGGAACTTTCTATGCACTGAAGGTCAAGCTTCAATTTTGACAAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAACTTTCTATGCACTGAAGGTCAAGCTTCAATTTTGACAAGGAT  650

seq1  TTTTTTTTAGGGGGGAGGTGGGAGGA  676
      ||||||||||||||||||||||||||
seq2  TTTTTTTTAGGGGGGAGGTGGGAGGA  676

seq1: chr13_21486405_21487546
seq2: B6Ng01-222F12.g_66_1211 (reverse)

seq1  CTAGTAGCTGTC-ACTCCATCTTCTCCAC-AGTGCCCCACAT--GAGTGA  46
      |||||||  ||| ||||||   ||||||| ||||||||||||  ||||||
seq2  CTAGTAGGCGTCAACTCCAATCTCTCCACAAGTGCCCCACATGAGAGTGA  50

seq1  CTACGACAAAAAGAAGCTCTGGGTGAGACT-CACTCTA-GCATCAGCCTT  94
      |||||||||||||||||||||| ||||||| ||||||| |||||||| | 
seq2  CTACGACAAAAAGAAGCTCTGGTTGAGACTCCACTCTAGGCATCAGCGT-  99

seq1  CTTGCATTGTAAAACCCAGGTTTAAAAACTTGACTAATAAATTTATGCAA  144
        |||| ||| ||||||||||||||||||||||||||||||||||||| |
seq2  -CTGCA-TGT-AAACCCAGGTTTAAAAACTTGACTAATAAATTTATGC-A  145

seq1  ATACAAGTTTATAAAATGTTTTAAGAAGGGA-GGGGGGAAACCCAAAACC  193
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATACAAGTTTATAAAATGTTTTAAGAAGGGAGGGGGGGAAACCCAAAACC  195

seq1  -AAAATACCCATAAAGCCTAGTAATACTAACCTCTGACTTCTGAGGGCAG  242
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCCATAAAGCCTAGTAATACTAACCTCTGACTTCTGAGGGCAG  245

seq1  GGATCCC-AAAGACTCCTGCTTCAGCAGAGGCTCCACGGGCTCCATCTGG  291
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCAAAAGACTCCTGCTTCAGCAGAGGCTCCACGGGCTCCATCTGG  295

seq1  CTACTTTCTGAGCCCTGAGCTGATGTCAACAGCACTGCCTTGGAGCAAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTGAGCCCTGAGCTGATGTCAACAGCACTGCCTTGGAGCAAAG  345

seq1  GAGTTCCTGCCCATCGTCATCATCTGGAACCTGGAAGTCAGTCATTCAGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGCCCATCGTCATCATCTGGAACCTGGAAGTCAGTCATTCAGT  395

seq1  TTTATTTTCTATCTACTTATTAGACATTTCCAAAGACATTTCCTATCAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTATCTACTTATTAGACATTTCCAAAGACATTTCCTATCAGC  445

seq1  TTGGCATTGTATCCAAATTCTACAAATATGTACTCATTTAATAGAAACAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATTGTATCCAAATTCTACAAATATGTACTCATTTAATAGAAACAA  495

seq1  TTCCTTCATAAGGGTACAACTTATCCAAAATCATGCTACTAAATGGCAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATAAGGGTACAACTTATCCAAAATCATGCTACTAAATGGCAAA  545

seq1  GCTAAAATGGAAAGTTAGGCAAGTATTTCCACAGCTCATTCAATGCTTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATGGAAAGTTAGGCAAGTATTTCCACAGCTCATTCAATGCTTAT  595

seq1  TATACACATACAGATTTATGAACCACTTTAGGAAAATGGTGATATAAACC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATACAGATTTATGAACCACTTTAGGAAAATGGTGATATAAACC  645

seq1  CGTCACCTGCAAATTTCTTATCAGAAAACTGAGGATGGTATTTCTAGTTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACCTGCAAATTTCTTATCAGAAAACTGAGGATGGTATTTCTAGTTT  695

seq1  AGTCTAAAGAGTGAGTGAAACCAGTAAGCTACATGAAACCACCCATTAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAAGAGTGAGTGAAACCAGTAAGCTACATGAAACCACCCATTAAG  745

seq1  GCATGGCCTGTCCTGCCAGACGCAGGTTTGCTTCTAGATCACTAAGTCAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCTGTCCTGCCAGACGCAGGTTTGCTTCTAGATCACTAAGTCAG  795

seq1  TTTCCAAGCCTTTCTCTTCTGCTGCTCAGCCTTTCCACATCTTTTATACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAGCCTTTCTCTTCTGCTGCTCAGCCTTTCCACATCTTTTATACA  845

seq1  GGATAAAGTTCAGAGAATTCTGGCAACTTCTCACTGTTACAAAAGTCAGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAGTTCAGAGAATTCTGGCAACTTCTCACTGTTACAAAAGTCAGG  895

seq1  AAATAACTCCCAAGTGCAGAACCTTGGCCTTGGTCTTTGGTTAGAAGGCC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTCCCAAGTGCAGAACCTTGGCCTTGGTCTTTGGTTAGAAGGCC  945

seq1  ATGAGTTCTCCAATACAAAAACACTAGGGAATGAAAAAGGAAATTGTCTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCTCCAATACAAAAACACTAGGGAATGAAAAAGGAAATTGTCTG  995

seq1  CTAAAACAGGCCAGAGGTGGAAGTTAAACCTGGCCTCTTTTCTACCAGAG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGGCCAGAGGTGGAAGTTAAACCTGGCCTCTTTTCTACCAGAG  1045

seq1  GTTTAAACAAGGAACCCATAAATCTGGATAGTAAAAAAATAAAACCGCAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAACAAGGAACCCATAAATCTGGATAGTAAAAAAATAAAACCGCAA  1095

seq1  GCCCCAAAATAACCTTTTTAGATTCTAGCTTCTAAGAAAACCATAGAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAAAATAACCTTTTTAGATTCTAGCTTCTAAGAAAACCATAGAATT  1145

seq1  C  1142
      |
seq2  C  1146