BAC Information

Click to search

BAC

Clone NameB6Ng01-223H24
Chromosome13 (Build37)
Map Location 27,997,140 - 27,998,277
singlet/doubletsinglet
Overlap genenone
Upstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651
Downstream geneLOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223H24.bB6Ng01-223H24.g
ACCGA038227GA038228
length1,1601,177
definitionB6Ng01-223H24.b B6Ng01-223H24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgatggaatcacttttgctatgtagagttagctttgcagaccc
ccctctccctatgatgcctgcagcacagatagcctctctcattggctatt
tccacttgatgtctaaagctttcttgcatggacaatttaatgtcatagac
ctctactgacattaagcttcatacttcatatggttttgcagagcttcatt
gcaaggacacaaaacatgatatgctattcctagccttgagggatctttgg
aattttgattcaaacctcaaggagcccttgagtgttgcctcttttatgtt
tacaaagctactgtcacatgtacaatggtaccaaattatgaggcaggctt
gagagatagcctccctgattctcctgctttaatcatagtgtcttaggtga
ttttagatcataccaagttgggagagcatgttaactataacctagagcta
accatggcagtgttatatataagattgttctttggaggacataagtataa
ggagcagtgagattttttaattgcttgttggaaggtcataactttttttg
ttgtattttttatggattccagaagatacctgtttccattacaattaata
agtctgatgaccatatataaagggttgtgttgtgtaacagtagtagataa
tgggctatagatttgggaaaacatctaaaaaaaaagaaaagaaagaaaga
aaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaaaataccaggtaagaatctaaagtaaataccctgtcat
agttggaataagggcaagcaaaacccacaaggttatcagaaatccaaagg
ccaagttatatttataagtaaacctggttcataactgtacaagagtttga
ccacattggcccacccaaattgtaatgcacactgttaaccagcagatttg
atgcagagatgttctagtgttcttattttgcttcacatattaaaaaaaaa
tatatcttccactggagacttggaagggagaaggtctcataagtgatagt
tgttctactattggtgaagctattctctcagagtgttacctagacaagct
ttctatataaactaatctatttaaaataaatggattatatttcaacccaa
atatggtttt
gaattcaaggcccatacctaaacatgataaaagctatctacagcaaacca
ggagccaacatcaaagtaaatggagagaagctggaagcaatcccaataaa
atcagggactagacaagtctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagctttggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaacaaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggtg
tgactttaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
taggatagcaaaaactcttctcaaggatcaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtgtagagacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcactttgatcttcgacaaggga
gctaaaaccatccagtgggaggaaagacagcattttcaacaattggtgct
ggcacaactgggtgttatcatgtagaagaatgcgaatcaacccatactta
tctccttgtactaaggtcaatctaattggatcaaagaacctcacataagc
cagaagacactgaactatagaggagaagtggggaaaggcttgaagaatgg
cacaggggaaaaagttcctgaaccgacagcaatggcctgtgactgtaaga
ttcaaggaattgaccataaagtgtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27997140_27998277
seq2: B6Ng01-223H24.b_45_1204

seq1  GAATTCATGATGGAATCACTTTTGCTATGTAGAGTTAGCTTTGCAGACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGGAATCACTTTTGCTATGTAGAGTTAGCTTTGCAGACCC  50

seq1  CCCTCTCCCTATGATGCCTGCAGCACAGATAGCCTCTCTCATTGGCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTATGATGCCTGCAGCACAGATAGCCTCTCTCATTGGCTATT  100

seq1  TCCACTTGATGTCTAAAGCTTTCTTGCATGGACAATTTAATGTCATAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTGATGTCTAAAGCTTTCTTGCATGGACAATTTAATGTCATAGAC  150

seq1  CTCTACTGACATTAAGCTTCATACTTCATATGGTTTTGCAGAGCTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGACATTAAGCTTCATACTTCATATGGTTTTGCAGAGCTTCATT  200

seq1  GCAAGGACACAAAACATGATATGCTATTCCTAGCCTTGAGGGATCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACACAAAACATGATATGCTATTCCTAGCCTTGAGGGATCTTTGG  250

seq1  AATTTTGATTCAAACCTCAAGGAGCCCTTGAGTGTTGCCTCTTTTATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGATTCAAACCTCAAGGAGCCCTTGAGTGTTGCCTCTTTTATGTT  300

seq1  TACAAAGCTACTGTCACATGTACAATGGTACCAAATTATGAGGCAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCTACTGTCACATGTACAATGGTACCAAATTATGAGGCAGGCTT  350

seq1  GAGAGATAGCCTCCCTGATTCTCCTGCTTTAATCATAGTGTCTTAGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATAGCCTCCCTGATTCTCCTGCTTTAATCATAGTGTCTTAGGTGA  400

seq1  TTTTAGATCATACCAAGTTGGGAGAGCATGTTAACTATAACCTAGAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATCATACCAAGTTGGGAGAGCATGTTAACTATAACCTAGAGCTA  450

seq1  ACCATGGCAGTGTTATATATAAGATTGTTCTTTGGAGGACATAAGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCAGTGTTATATATAAGATTGTTCTTTGGAGGACATAAGTATAA  500

seq1  GGAGCAGTGAGATTTTTTAATTGCTTGTTGGAAGGTCATAACTTTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGTGAGATTTTTTAATTGCTTGTTGGAAGGTCATAACTTTTTTTG  550

seq1  TTGTATTTTTTATGGATTCCAGAAGATACCTGTTTCCATTACAATTAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTTTATGGATTCCAGAAGATACCTGTTTCCATTACAATTAATA  600

seq1  AGTCTGATGACCATATATAAAGGGTTGTGTTGTGTAACAGTAGTAGATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATGACCATATATAAAGGGTTGTGTTGTGTAACAGTAGTAGATAA  650

seq1  TGGGCTATAGATTTGGGAAAACATCTAAAAAAAAAGAAAAGAAAGAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATAGATTTGGGAAAACATCTAAAAAAAAAGAAAAGAAAGAAAGA  700

seq1  AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  750

seq1  AGGAAGGAAGGAAAATACCAGGTAAGAATCTAAAGTAAATA-CCTGTCAT  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGGAAGGAAGGAAAATACCAGGTAAGAATCTAAAGTAAATACCCTGTCAT  800

seq1  AGTTGGAATAAGGGCAAGCAAAACCCACAAGGTTATCAGAAATCCAAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGAATAAGGGCAAGCAAAACCCACAAGGTTATCAGAAATCCAAAGG  850

seq1  CCAAGTTATATTTATAAGT-AACCTGGTTCATAACTGTACAAGAGTTTGA  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCAAGTTATATTTATAAGTAAACCTGGTTCATAACTGTACAAGAGTTTGA  900

seq1  CCACATTGG-CCACC--AATTGTAATGCACACTGTT-ACCAGCAGATTGG  944
      ||||||||| |||||  ||||||||||||||||||| ||||||||||| |
seq2  CCACATTGGCCCACCCAAATTGTAATGCACACTGTTAACCAGCAGATTTG  950

seq1  ATGCAGAGATG-TCTAGTGTTCT--ATTTGCTTCACATAT--AAAAAAAA  989
      ||||||||||| |||||||||||   ||||||||||||||  ||||||||
seq2  ATGCAGAGATGTTCTAGTGTTCTTATTTTGCTTCACATATTAAAAAAAAA  1000

seq1  TAT---CTCCACT-GAGACT---GAGGGAGAAGGTCTCAT-AGTGATAGG  1031
      |||    |||||| ||||||    |||||||||||||||| |||||||| 
seq2  TATATCTTCCACTGGAGACTTGGAAGGGAGAAGGTCTCATAAGTGATAGT  1050

seq1  TG-TCTACTATT-GTG-AGCTA-TCTCTCAGGAGTGTTACCTAGACAAGC  1077
      || ||||||||| ||| ||||| ||||||| |||||||||||||||||||
seq2  TGTTCTACTATTGGTGAAGCTATTCTCTCA-GAGTGTTACCTAGACAAGC  1099

seq1  TTCATATATAAACTAATCTATTTAAAATAAATGTATTATAATTTCAA-CC  1126
      ||  ||||||||||||||||||||||||||||| ||||| ||||||| ||
seq2  TTTCTATATAAACTAATCTATTTAAAATAAATGGATTAT-ATTTCAACCC  1148

seq1  AAATATGTTTTT  1138
      ||||||| ||||
seq2  AAATATGGTTTT  1160