BAC Information

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BAC

Clone NameB6Ng01-223M02
Chromosome13 (Build37)
Map Location 16,412,759 - 16,557,705
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M02.bB6Ng01-223M02.g
ACCGA038407GA038408
length1,092758
definitionB6Ng01-223M02.b B6Ng01-223M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,556,621 - 16,557,705)(16,412,759 - 16,413,512)
sequence
ggaattccatccttaagactttttgactactaccaactttttaggcagat
ttgcacttcattctcacaagatgagcaaaatgagtaacggagcttcttac
ttattgattaattcctatgtaccgcagggcaaagcctgcgtatgtagtaa
ctagttctttcttaccacaagcactattcctatctctctgagatttttaa
gtctgtgttccaggaatcttgctaataaccacattagagtttgcattact
attagtttgaaatgtatctgagaacatctatagagaactccaaggttaca
ctaaaacctatgttcccctcagctaaccagaagagagaactgaaactcaa
gagtcaaagcctgtctgaggacacagagttgtcaaggatcagatctgatc
tcagcattgtctgactggaaagacctgtgcttatactcagcacacacggt
tttagactgcaaaaggtgttctgagaaaactcttatgacagattgaggta
atccagtgaagaacccttttcagatattgcctaagtccccatccttgatc
tttcatctggaaagttacccccattaaaggcatctctgcatatacatgac
taacatcagtcatttcagagatgaaccagaggaaggaaaaaaagctatga
aaagaagggctatagtccctggaaatgcacacaatagtgatttttttttt
cccaaggagagactaattacctttcgaaattccaaaaatgtcaaactgat
tatggagtatgctcttttttcttataacatcacatgcacaagagttattt
tgggataatgagcaattttaatcttgcttaataaaagctattcacagggc
actttaggaggtatctgcatataagtagtctttctaaacttcttttctcc
tttcagtggcattttatttcaagagtatgcaatttttttctaaaactggg
cagcttaattttagaaatcaggaaggcaaagcttataaacctgagtaaat
tttctgttttttgaaaaggatacctagaaaaattaaaagaaaggaaagaa
aaattgaatagaatatgattcataaggctttacacctataaa

gaattcccaaatgctagtttacagcatgtgatctgtagtgccctgcaaac
cacttcccttgtgtgatcaaggccctgggttcaacactgaaaaacatgaa
gaaaatcaaggtccactagatggctcatttagtgcttatttgtcccacaa
gcactaggacctgaacttgatccctggaacccgtttgtagaggagaaaac
ctgcttcaacaagctatcctctgcctgtcgacacatctgtgctagtaggt
gactgcattcacacacacacacacacacacacacacacacacacacacac
tggcacactgcagggaggaagagagaaagagaaagatacaataaatttaa
aatcttacacttttaaagaaatacaatgaaactcagcattttgaaaaggt
gctcccattgaccttttagtaggaatgatctttatttttaaaaacctaga
aggaatattaacaattttacttcctaaatcatgtatctcaggagagaaaa
atcaaatgaagaaaacgagtctttgtgtgtaattgaggaatttttgagta
ttcttattttttcaactttattttaacagagaatttagatctcttgcctg
tgggagatgggtgctatggtgggaattatggggataatagggcaatggct
gtaactgggaggaagggagaaaggtaatagacagtgagagaaaaagaatg
ggtgatagcttaacaaataatgatgttttaaaaaccccatacataaaggt
attatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_16556621_16557705
seq2: B6Ng01-223M02.b_47_1137 (reverse)

seq1  TTTATAGTTTGTAAGCCTTATGAAATTCATATTCTATTCAA-TTTTCTTT  49
      ||||||| |   ||||||||||||  ||||||||||||||| ||||||||
seq2  TTTATAGGTGTAAAGCCTTATGAA--TCATATTCTATTCAATTTTTCTTT  48

seq1  CCTTTCTTTTATTTTTTCTAGGTATCTTTTTCAAAAAACAGAAAATTTAC  99
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  CCTTTCTTTTAATTTTTCTAGGTATCCTTTTCAAAAAACAGAAAATTTAC  98

seq1  TCAGGTTTAT-AGCTTTGCCCTTCTGATTTCT-AAATTTAGCTG-CCAGT  146
      |||||||||| ||||||||| | ||||||||| ||||| ||||| |||||
seq2  TCAGGTTTATAAGCTTTGCCTTCCTGATTTCTAAAATTAAGCTGCCCAGT  148

seq1  TTTAG-AAAAATTTGCATACTCTTGAA--TAAATGCCACTGAAAGGAG-A  192
      ||||| ||||| |||||||||||||||   |||||||||||||||||| |
seq2  TTTAGAAAAAAATTGCATACTCTTGAAATAAAATGCCACTGAAAGGAGAA  198

seq1  AAGAAGTTTAGAAAGACTACTTATATGCAGATACCTCCTAAAGTGCCCTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTAGAAAGACTACTTATATGCAGATACCTCCTAAAGTGCCCTG  248

seq1  TGAATAGCTTTTATTAAGCAAGATTAAAATTGCTCATTATCCCAAAATAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCTTTTATTAAGCAAGATTAAAATTGCTCATTATCCCAAAATAA  298

seq1  CTCTTGTGCATGTGATGTTATAAGAAAAAAGAGCATACTCCATAATCAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGCATGTGATGTTATAAGAAAAAAGAGCATACTCCATAATCAGT  348

seq1  TTGACATTTTTGGAATTTCGAAAGGTAATTAGTCTCTCCTTGGGAAAAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATTTTTGGAATTTCGAAAGGTAATTAGTCTCTCCTTGGGAAAAAA  398

seq1  AAAATCACTATTGTGTGCATTTCCAGGGACTATAGCCCTTCTTTTCATAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACTATTGTGTGCATTTCCAGGGACTATAGCCCTTCTTTTCATAG  448

seq1  CTTTTTTTCCTTCCTCTGGTTCATCTCTGAAATGACTGATGTTAGTCATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCCTTCCTCTGGTTCATCTCTGAAATGACTGATGTTAGTCATG  498

seq1  TATATGCAGAGATGCCTTTAATGGGGGTAACTTTCCAGATGAAAGATCAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAGAGATGCCTTTAATGGGGGTAACTTTCCAGATGAAAGATCAA  548

seq1  GGATGGGGACTTAGGCAATATCTGAAAAGGGTTCTTCACTGGATTACCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGACTTAGGCAATATCTGAAAAGGGTTCTTCACTGGATTACCTC  598

seq1  AATCTGTCATAAGAGTTTTCTCAGAACACCTTTTGCAGTCTAAAACCGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTCATAAGAGTTTTCTCAGAACACCTTTTGCAGTCTAAAACCGTG  648

seq1  TGTGCTGAGTATAAGCACAGGTCTTTCCAGTCAGACAATGCTGAGATCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAGTATAAGCACAGGTCTTTCCAGTCAGACAATGCTGAGATCAG  698

seq1  ATCTGATCCTTGACAACTCTGTGTCCTCAGACAGGCTTTGACTCTTGAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCCTTGACAACTCTGTGTCCTCAGACAGGCTTTGACTCTTGAGT  748

seq1  TTCAGTTCTCTCTTCTGGTTAGCTGAGGGGAACATAGGTTTTAGTGTAAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTCTCTCTTCTGGTTAGCTGAGGGGAACATAGGTTTTAGTGTAAC  798

seq1  CTTGGAGTTCTCTATAGATGTTCTCAGATACATTTCAAACTAATAGTAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTTCTCTATAGATGTTCTCAGATACATTTCAAACTAATAGTAAT  848

seq1  GCAAACTCTAATGTGGTTATTAGCAAGATTCCTGGAACACAGACTTAAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCTAATGTGGTTATTAGCAAGATTCCTGGAACACAGACTTAAAA  898

seq1  ATCTCAGAGAGATAGGAATAGTGCTTGTGGTAAGAAAGAACTAGTTACTA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAGAGATAGGAATAGTGCTTGTGGTAAGAAAGAACTAGTTACTA  948

seq1  CATACGCAGGCTTTGCCCTGCGGTACATAGGAATTAATCAATAAGTAAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGCAGGCTTTGCCCTGCGGTACATAGGAATTAATCAATAAGTAAGA  998

seq1  AGCTCCGTTACTCATTTTGCTCATCTTGTGAGAATGAAGTGCAAATCTGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGTTACTCATTTTGCTCATCTTGTGAGAATGAAGTGCAAATCTGC  1048

seq1  CTAAAAAGTTGGTAGTAGTCAAAAAGTCTTAAGGATGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAAGTTGGTAGTAGTCAAAAAGTCTTAAGGATGGAATTC  1091


seq1: chr13_16412759_16413512
seq2: B6Ng01-223M02.g_69_826

seq1  GAATTCCCAAATGCTAGTTTACAGCATGTGATCTGTAGTGCCCTGCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAATGCTAGTTTACAGCATGTGATCTGTAGTGCCCTGCAAAC  50

seq1  CACTTCCCTTGTGTGATCAAGGCCCTGGGTTCAACACTGAAAAACATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCTTGTGTGATCAAGGCCCTGGGTTCAACACTGAAAAACATGAA  100

seq1  GAAAATCAAGGTCCACTAGATGGCTCATTTAGTGCTTATTTGTCCCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAAGGTCCACTAGATGGCTCATTTAGTGCTTATTTGTCCCACAA  150

seq1  GCACTAGGACCTGAACTTGATCCCTGGAACCCGTTTGTAGAGGAGAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAGGACCTGAACTTGATCCCTGGAACCCGTTTGTAGAGGAGAAAAC  200

seq1  CTGCTTCAACAAGCTATCCTCTGCCTGTCGACACATCTGTGCTAGTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAACAAGCTATCCTCTGCCTGTCGACACATCTGTGCTAGTAGGT  250

seq1  GACTGCATTCACACACACACACACACACACACACACACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCATTCACACACACACACACACACACACACACACACACACACACAC  300

seq1  TGGCACACTGCAGGGAGGAAGAGAGAAAGAGAAAGATACAATAAATTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACTGCAGGGAGGAAGAGAGAAAGAGAAAGATACAATAAATTTAA  350

seq1  AATCTTACACTTTTAAAGAAATACAATGAAACTCAGCATTTTGAAAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTACACTTTTAAAGAAATACAATGAAACTCAGCATTTTGAAAAGGT  400

seq1  GCTCCCATTGACCTTTTAGTAGGAATGATCTTTATTTTTAAAAACCTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATTGACCTTTTAGTAGGAATGATCTTTATTTTTAAAAACCTAGA  450

seq1  AGGAATATTAACAATTTTACTTCCTAAATCATGTATCTCAGGAGAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATTAACAATTTTACTTCCTAAATCATGTATCTCAGGAGAGAAAA  500

seq1  ATCAAATGAAGAAAACGAGTCTTTGTGTGTAATTGAGGAATTTTTGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGAAGAAAACGAGTCTTTGTGTGTAATTGAGGAATTTTTGAGTA  550

seq1  TTCTTATTTTTTCAACTTTATTTTAACAGAGAATTTAGATCTCTTGCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTTTTCAACTTTATTTTAACAGAGAATTTAGATCTCTTGCCTG  600

seq1  TGGGAGATGGGTGCTATGGTGGGAATTATGGGGATAATAGGGCAATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGATGGGTGCTATGGTGGGAATTATGGGGATAATAGGGCAATGGCT  650

seq1  GTAACTGGGAGGAAGGGAGAAAGGTAATAGACAGTGAGAG-AAAAGAATG  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTAACTGGGAGGAAGGGAGAAAGGTAATAGACAGTGAGAGAAAAAGAATG  700

seq1  GGTGATAGC-TAAC-AATAATGATGTTTTAAAAA-CCCATACAGAAAGGT  746
      ||||||||| |||| ||||||||||||||||||| |||||||| ||||||
seq2  GGTGATAGCTTAACAAATAATGATGTTTTAAAAACCCCATACATAAAGGT  750

seq1  ATTATTTT  754
      ||||||||
seq2  ATTATTTT  758


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