BAC Information

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BAC

Clone NameB6Ng01-223M19
Chromosome13 (Build37)
Map Location 21,961,369 - 21,962,517
singlet/doubletsinglet
Overlap genenone
Upstream geneAoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
Downstream geneLOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M19.bB6Ng01-223M19.g
ACCGA038441GA038442
length1,1461,178
definitionB6Ng01-223M19.b B6Ng01-223M19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaagacataaagataaaagaattagtaactttacctgtcta
attcatcaagttccgttatctttttctctctggtcttctaaaaattttgc
caggtagtcattgttttttattagagccagtcagtataagtgaagtgtgt
gaatagtcagtataagtgtgaagctatcctataaaaataataatttataa
ctttcagaacttgatatttctcatgtgaaagacacagtggaactcacatc
ctctgaggttctgtgagtcacatccttggcctcacgcacagtgctctcac
acagatccattcttcataagccatcagagtacatttgatacctgtgtcat
ttaattcacaacctatgtcttagtgaacctcttgaaacagaatgtctgcc
atgggttcctgataccatgagtagagtctaaacagtttcttccatagcct
ggtgagaatgcaaatgcttctgaaatgctgtcagctccaagtcatggaag
cagagaatgtttgccaaaaaagcaccatgtagagaggataacgtggcaca
gtatttcttccatactggacctattgtacgcatattaatactatttctct
aacaaatgaacatggcatttatgttagacttcgtattctgggaaaatgat
attctttggaatatgaaggattaaaccctgtgttagagatgcaatttaag
taatctctcaaggaaaacactgaaaacttttctactattatttaatttgg
agacttgggcttttttcctcacaagtcctttacaatgaagctgtaatgaa
aatcagcataaaatgcaataattgacaatatgcccttggacaacttctcc
aacacttgtttttacttcacttatattgcattgtgattgaaataagtatt
tagttggaaatgattatcagagtgaactataaattttcataggccaggca
tggtagtgaatgttcaaagcccatcactttagaggtgaaggagatacaag
ttcatgtcatcctcattacataacaagttccaggctaaccttgattgtgt
aagaattctgtctcaaaactatggaacagcccaactcttctagctacctt
atacactaaaaggtcagtgttgtcaggcctatatggaatgacctga
gaattcatgcaatgctgcccacaggtcaccacagtcacatgagtgagcca
cggtgtggcacaaccctgagaactgtgtcctgaggactccatgctgttat
agagttctcctctgcctgctgccctcatgcccttaatccaagaattgtat
ggaaactctaaggggctttcagtccctcacgcctctgacactcacgatac
ttgatctctggcaggcattgctgctggagcagattaatgattcaatcact
actcaccctaagaaagaacttagattgtcagcagtgtccacccccaccct
taagaaatttggaaaaataaaattgttagtgaagctaggtttagatgttt
ttactactggctctgatgtagaaaatcttaggaaagaatttgaagttcag
gaaggcacattcatacgagctaagctagagaccttttatggtcaggaacg
gagaacaatggcagtactggctgtgattctcactgaggttggactggtga
taattgattccttatacccatttgtatcctcagcttcctgatatgattga
ttgatctatctatctatccatgtatctatctatctatctatctatctatc
tatctttaggtgtggtttttttttttaagatttgtttattttatgtatat
gagtacactgtagctatcttcagacacaccagaagagggcatcagatctc
attacagatggttgtgagccaccatgtggttgctgggaattgaactcagg
acctttggaagagcaatcagtgcccttaactactgagccatctctccaac
ccctgatatgatttattaagattggctgatgagtagacatgcattctaca
gattaaggtagatatggctgatttttttaatataaaagtttatagacttg
tgattctttgaagattcttaaaagattaccttaaaagataagtagaatta
tcactccttttctttgtcagtggaagtgctggctttcaataaaaagaaac
tagctgaggaaactactttgcttgcttacacctttgtaaattaatacaag
tccttaagttacaaatgtgcatggatatgggatatcacttagaagaaatt
aaatgtaattcaattgaagttatactgctgaaagattcctggcatactag
taatgccaggaaaagcactgacatcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21961369_21962517
seq2: B6Ng01-223M19.b_48_1193 (reverse)

seq1  TCAGTTCATTTCATATAGCTCTGACAACACTGGACTTTTAGTTGTAATTA  50
      |||| ||||| |||||||  ||||||||||||  ||||||| ||| || |
seq2  TCAGGTCATTCCATATAGGCCTGACAACACTGACCTTTTAG-TGT-ATAA  48

seq1  GGTAGCTAG-AGAGTTGGCTTGTCCCTTAGTTTTTGAGACAGAA-TCTTA  98
      ||||||||| ||||||||  ||| || ||| ||||||||||||| |||||
seq2  GGTAGCTAGAAGAGTTGGGCTGTTCCATAG-TTTTGAGACAGAATTCTTA  97

seq1  CACAATCAAGGTTAGCCTGGAACTTGTTATGTAATGAGGATGACATTGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACAATCAAGGTTAGCCTGGAACTTGTTATGTAATGAGGATGACA-TGAA  146

seq1  CTTGTATCTTCCTTCACCTCTAAAGTGATGGGCTTTGAACATTCACTACC  198
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATC-TCCTTCACCTCTAAAGTGATGGGCTTTGAACATTCACTACC  195

seq1  ATGCCTGGCCTATGAAAATTTATAGTTCACTCTGATAATCATTTCCAACT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGCCTATGAAAATTTATAGTTCACTCTGATAATCATTTCCAACT  245

seq1  AAATACTTATTTCAATCACAATGCAATATAAGTGAAGTAAAAACAAGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTATTTCAATCACAATGCAATATAAGTGAAGTAAAAACAAGTGT  295

seq1  TGGAGAAGTTGTCCAAGGGCATATTGTCAATTATTGCATTTTATGCTGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGTTGTCCAAGGGCATATTGTCAATTATTGCATTTTATGCTGAT  345

seq1  TTTCATTACAGCTTCATTGTAAAGGACTTGTGAGGAAAAAAGCCCAAGTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTACAGCTTCATTGTAAAGGACTTGTGAGGAAAAAAGCCCAAGTC  395

seq1  TCCAAATTAAATAATAGTAGAAAAGTTTTCAGTGTTTTCCTTGAGAGATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTAAATAATAGTAGAAAAGTTTTCAGTGTTTTCCTTGAGAGATT  445

seq1  ACTTAAATTGCATCTCTAACACAGGGTTTAATCCTTCATATTCCAAAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAATTGCATCTCTAACACAGGGTTTAATCCTTCATATTCCAAAGAA  495

seq1  TATCATTTTCCCAGAATACGAAGTCTAACATAAATGCCATGTTCATTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTTTCCCAGAATACGAAGTCTAACATAAATGCCATGTTCATTTGT  545

seq1  TAGAGAAATAGTATTAATATGCGTACAATAGGTCCAGTATGGAAGAAATA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATAGTATTAATATGCGTACAATAGGTCCAGTATGGAAGAAATA  595

seq1  CTGTGCCACGTTATCCTCTCTACATGGTGCTTTTTTGGCAAACATTCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCCACGTTATCCTCTCTACATGGTGCTTTTTTGGCAAACATTCTCT  645

seq1  GCTTCCATGACTTGGAGCTGACAGCATTTCAGAAGCATTTGCATTCTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATGACTTGGAGCTGACAGCATTTCAGAAGCATTTGCATTCTCAC  695

seq1  CAGGCTATGGAAGAAACTGTTTAGACTCTACTCATGGTATCAGGAACCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATGGAAGAAACTGTTTAGACTCTACTCATGGTATCAGGAACCCA  745

seq1  TGGCAGACATTCTGTTTCAAGAGGTTCACTAAGACATAGGTTGTGAATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGACATTCTGTTTCAAGAGGTTCACTAAGACATAGGTTGTGAATTA  795

seq1  AATGACACAGGTATCAAATGTACTCTGATGGCTTATGAAGAATGGATCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACAGGTATCAAATGTACTCTGATGGCTTATGAAGAATGGATCTG  845

seq1  TGTGAGAGCACTGTGCGTGAGGCCAAGGATGTGACTCACAGAACCTCAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGCACTGTGCGTGAGGCCAAGGATGTGACTCACAGAACCTCAGA  895

seq1  GGATGTGAGTTCCACTGTGTCTTTCACATGAGAAATATCAAGTTCTGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGAGTTCCACTGTGTCTTTCACATGAGAAATATCAAGTTCTGAAA  945

seq1  GTTATAAATTATTATTTTTATAGGATAGCTTCACACTTATACTGACTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAATTATTATTTTTATAGGATAGCTTCACACTTATACTGACTATT  995

seq1  CACACACTTCACTTATACTGACTGGCTCTAATAAAAAACAATGACTACCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTCACTTATACTGACTGGCTCTAATAAAAAACAATGACTACCT  1045

seq1  GGCAAAATTTTTAGAAGACCAGAGAGAAAAAGATAACGGAACTTGATGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATTTTTAGAAGACCAGAGAGAAAAAGATAACGGAACTTGATGAA  1095

seq1  TTAGACAGGTAAAGTTACTAATTCTTTTATCTTTATGTCTTTATGGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGGTAAAGTTACTAATTCTTTTATCTTTATGTCTTTATGGAATT  1145

seq1  C  1149
      |
seq2  C  1146