BAC Information

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BAC

Clone NameB6Ng01-223N04
Chromosome13 (Build37)
Map Location 62,485,341 - 62,602,000
singlet/doubletdoublet
Overlap geneLOC100041986, 8430426H19Rik, LOC100041455
Upstream geneCts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979
Downstream gene6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223N04.bB6Ng01-223N04.g
ACCGA038459GA038460
length1,154848
definitionB6Ng01-223N04.b B6Ng01-223N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,600,858 - 62,602,000)(62,485,341 - 62,486,186)
sequence
gaattcctcccatgtgaggctgatgatatcagttacaaaccactgtaggc
atggttagtagtgttgaagagagtatcctgttctcagagagcagcattgt
ttgattagatccctctttagtttgtcccattgtgtggtagtttctgctga
cttcatagaagcctgccatttctttccttttcccctgtaggtagtataca
aactgccttagcataatccttatctcctggccaaccaccccagcttttat
actttctacctcctactttttgtaccttttgcatcctctgaggccttgca
cttaggactatgtcaatgaagaatgacatgctctttgagggtattggtgt
cttaagaaattattagtgatatatattggctgtgtaaatctacgaaccgc
caagtggccaaaccaagtagtgtcggctccatccttaaagtgttcacaat
tgccaggcttggtggtgcacgcctttaatcccaggactcaggaggcagag
gcaggtggatttctgagttcgaggccagcctggtctacagattgagttcc
aggacagccagcgctctacggagagaccctgtctcaaaaaaaccaaaaaa
taaaacaaagtgttcacagtataacctagagtgtaaacctaaaagagaca
taagtatgacagagtatatgggatgcaaaatctctactggcctggctcct
cttttgaccattaatcaaagctagatgagtggttattgttacagagattt
atttttcttaatttttttgttgtctgatttccttcctgggaagacatgtt
aattctacaacagctgtattttcacccctttagaaaaatgtttctgatgc
aaacatatttgtgccctcaggggcactggcactaatcaaagcctgttgct
ccccagaacaatgaccttgatttcctcttgattaaagtttctaaattatt
aagttaaatggtaccaacacaacagagatttaaaggttagcttttgaatc
aacgaattgaaattagcattgcagttacagggaaggattttcttttttcc
tttttttaagaatttattattatattatgtaagtacacctgtagcctgtt
cctcagaacactctcagaaagaggccatccagatttcgttaccggattgg
tgtg
gaattccacagacggagccttaatgtcagaaaaataaaaagaccttgcaa
gccagtatgtgggaagaagagaaagagaaaggaccaccaacttcaatatc
ctttatatatgtaggctcacagcagaagttctggcctagattaatttttt
ttttcttgtcaaccaaaacctccagattaaaaaagggttttcccatgtta
aatggtgaaaataataaaaaccctcagagtgcccatctgtttggttttag
gtaactgaactcctgtaactacagtcatttgaaataattacattggtggc
aacaacagttgacaggaagttcagtttttatccagattctttctttttag
atttatatatttattttatgtatatgagtacaatgtagctgtacagatgg
ttgtgagccttcatgtggctgtggagaattaaatttttcagacctctact
ttggtcaaccccactcagtccctgcttgctctggcccaaagatttattta
ttcttattatacataattacactgtagctgacttcagacactccagatct
cattatggatagttgtgagcaccatgtggttgctgggatttgaactcagg
accttgggaagagcattcagtgttcttaccggcttgagccttctccccag
cccctttatccagattatttaattttcctggtctgcagatcggagttatg
gccagtcaaggtgactatcaagatggaaaattggtgacctcactacactt
tgctaatgtcaagtacagccataccaggaaaactttcaccttcaaagcct
agctataataaattcaggatgccttcccaaaaatttgactttagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62600858_62602000
seq2: B6Ng01-223N04.b_46_1199 (reverse)

seq1  CACACC-ATCC-GTAACGAAATCT-GATGCCCTC-TTCTG-GAGTG-TCT  44
      |||||| |||| |||||||||||| |||| |||| ||||| ||||| |||
seq2  CACACCAATCCGGTAACGAAATCTGGATGGCCTCTTTCTGAGAGTGTTCT  50

seq1  GAGG-ACA-GCTACA-GTGTACTTACATATAATAAATAAATAAATCTTTA  91
      |||| ||| |||||| |||||||||||||  || |||||  || |||| |
seq2  GAGGAACAGGCTACAGGTGTACTTACATAATAT-AATAATAAATTCTTAA  99

seq1  AAAAAAGAAAAAAGAAAATCCTTTCCCTGTTACTGCAATGCTTATTTC-A  140
      ||||| ||||||||||||||| |||||||| ||||||||||| ||||| |
seq2  AAAAAGGAAAAAAGAAAATCC-TTCCCTGTAACTGCAATGCTAATTTCAA  148

seq1  TTCGTTGATTCAAAAGCTTAACTTTAAATCTCTGTTGTGTTAGTACCATT  190
      |||||||||||||||||| | |||||||||||||||||||| ||||||||
seq2  TTCGTTGATTCAAAAGCTAACCTTTAAATCTCTGTTGTGTTGGTACCATT  198

seq1  TAACTTAATAATTTAGAAACTTTAATCAAGAGGAAATCAAGGTCATTGTT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAATAATTTAGAAACTTTAATCAAGAGGAAATCAAGGTCATTGTT  248

seq1  CTGGGGAGCAACAGGCTTTGATTAGTGCCAGTGCCCCTGAGGGCACAAAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAGCAACAGGCTTTGATTAGTGCCAGTGCCCCTGAGGGCACAAAT  298

seq1  ATGTTTGCATCAGAAACATTTTTCTAAAGGGGTGAAAATACAGCTGTTGT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCATCAGAAACATTTTTCTAAAGGGGTGAAAATACAGCTGTTGT  348

seq1  AGAATTAACATGTCTTCCCAGGAAGGAAATCAGACAAC-AAAAAATTAAG  389
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAATTAACATGTCTTCCCAGGAAGGAAATCAGACAACAAAAAAATTAAG  398

seq1  AAAAATAAATCTCTGTAACAAT-ACCACTCATCTAGCTTTGATTAATGGT  438
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAATAAATCTCTGTAACAATAACCACTCATCTAGCTTTGATTAATGGT  448

seq1  C-AAAGAGGAGCCAGGCCAGTAGAGATTTTGCATCCCATATACTCTGTCA  487
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAGGAGCCAGGCCAGTAGAGATTTTGCATCCCATATACTCTGTCA  498

seq1  TACTTATGTCTCTTTTAGGTTTACACTCTAGGTTATACTGTGAACACTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGTCTCTTTTAGGTTTACACTCTAGGTTATACTGTGAACACTTT  548

seq1  GTTTTATTTTTTGGTTTTTTTGAGACAGGGTCTCTCCGTAGAGCGCTGGC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTTTTGGTTTTTTTGAGACAGGGTCTCTCCGTAGAGCGCTGGC  598

seq1  TGTCCTGGAACTCAATCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGGAACTCAATCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCC  648

seq1  ACCTGCCTCTGCCTCCTGAGTCCTGGGATTAAAGGCGTGCACCACCAAGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTGCCTCCTGAGTCCTGGGATTAAAGGCGTGCACCACCAAGC  698

seq1  CTGGCAATTGTGAACACTTTAAGGATGGAGCCGACACTACTTGGTTTGGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAATTGTGAACACTTTAAGGATGGAGCCGACACTACTTGGTTTGGC  748

seq1  CACTTGGCGGTTCGTAGATTTACACAGCCAATATATATCACTAATAATTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCGGTTCGTAGATTTACACAGCCAATATATATCACTAATAATTT  798

seq1  CTTAAGACACCAATACCCTCAAAGAGCATGTCATTCTTCATTGACATAGT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACACCAATACCCTCAAAGAGCATGTCATTCTTCATTGACATAGT  848

seq1  CCTAAGTGCAAGGCCTCAGAGGATGCAAAAGGTACAAAAAGTAGGAGGTA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTGCAAGGCCTCAGAGGATGCAAAAGGTACAAAAAGTAGGAGGTA  898

seq1  GAAAGTATAAAAGCTGGGGTGGTTGGCCAGGAGATAAGGATTATGCTAAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATAAAAGCTGGGGTGGTTGGCCAGGAGATAAGGATTATGCTAAG  948

seq1  GCAGTTTGTATACTACCTACAGGGGAAAAGGAAAGAAATGGCAGGCTTCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGTATACTACCTACAGGGGAAAAGGAAAGAAATGGCAGGCTTCT  998

seq1  ATGAAGTCAGCAGAAACTACCACACAATGGGACAAACTAAAGAGGGATCT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTCAGCAGAAACTACCACACAATGGGACAAACTAAAGAGGGATCT  1048

seq1  AATCAAACAATGCTGCTCTCTGAGAACAGGATACTCTCTTCAACACTACT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACAATGCTGCTCTCTGAGAACAGGATACTCTCTTCAACACTACT  1098

seq1  AACCATGCCTACAGTGGTTTGTAACTGATATCATCAGCCTCACATGGGAG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGCCTACAGTGGTTTGTAACTGATATCATCAGCCTCACATGGGAG  1148

seq1  GAATTC  1143
      ||||||
seq2  GAATTC  1154

seq1: chr13_62485341_62486186
seq2: B6Ng01-223N04.g_67_914

seq1  GAATTCCACAGACGGAGCCTTAATGTCAGAAAAATAAAAAGACCTTGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGACGGAGCCTTAATGTCAGAAAAATAAAAAGACCTTGCAA  50

seq1  GCCAGTATGTGGGAAGAAGAGAAAGAGAAAGGACCACCAACTTCAATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTATGTGGGAAGAAGAGAAAGAGAAAGGACCACCAACTTCAATATC  100

seq1  CTTTATATATGTAGGCTCACAGCAGAAGTTCTGGCCTAGATTAATTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATATGTAGGCTCACAGCAGAAGTTCTGGCCTAGATTAATTTTTT  150

seq1  TTTTCTTGTCAACCAAAACCTCCAGATTAAAAAAGGGTTTTCCCATGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTCAACCAAAACCTCCAGATTAAAAAAGGGTTTTCCCATGTTA  200

seq1  AATGGTGAAAATAATAAAAACCCTCAGAGTGCCCATCTGTTTGGTTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAAAATAATAAAAACCCTCAGAGTGCCCATCTGTTTGGTTTTAG  250

seq1  GTAACTGAACTCCTGTAACTACAGTCATTTGAAATAATTACATTGGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGAACTCCTGTAACTACAGTCATTTGAAATAATTACATTGGTGGC  300

seq1  AACAACAGTTGACAGGAAGTTCAGTTTTTATCCAGATTCTTTCTTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAGTTGACAGGAAGTTCAGTTTTTATCCAGATTCTTTCTTTTTAG  350

seq1  ATTTATATATTTATTTTATGTATATGAGTACAATGTAGCTGTACAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATATTTATTTTATGTATATGAGTACAATGTAGCTGTACAGATGG  400

seq1  TTGTGAGCCTTCATGTGGCTGTGGAGAATTAAATTTTTCAGACCTCTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCTTCATGTGGCTGTGGAGAATTAAATTTTTCAGACCTCTACT  450

seq1  TTGGTCAACCCCACTCAGTCCCTGCTTGCTCTGGCCCAAAGATTTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCAACCCCACTCAGTCCCTGCTTGCTCTGGCCCAAAGATTTATTTA  500

seq1  TTCTTATTATACATAATTACACTGTAGCTGACTTCAGACACTCCAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTATACATAATTACACTGTAGCTGACTTCAGACACTCCAGATCT  550

seq1  CATTATGGATAGTTGTGAGCACCATGTGGTTGCTGGGATTTGAACTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGGATAGTTGTGAGCACCATGTGGTTGCTGGGATTTGAACTCAGG  600

seq1  ACCTTGGGAAGAGCAGTCAGTGTTCTTACCGGC-TGAGCCTTCTCCCCAG  649
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  ACCTTGGGAAGAGCATTCAGTGTTCTTACCGGCTTGAGCCTTCTCCCCAG  650

seq1  CCCCTTTATCCAGATTATT--AATTTCCTGGTCTGCAGAACGGAGTAATG  697
      |||||||||||||||||||  | |||||||||||||||| |||||| |||
seq2  CCCCTTTATCCAGATTATTTAATTTTCCTGGTCTGCAGATCGGAGTTATG  700

seq1  GCCAGTCAAGGTGACTATCAAGATGGAAAATTGGTGACCTCACTACTCAT  747
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  GCCAGTCAAGGTGACTATCAAGATGGAAAATTGGTGACCTCACTACACTT  750

seq1  TGCTAATGTCAAGTACAGCCATACCAGGAAAACTTTCACCTTCAAAGCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGTCAAGTACAGCCATACCAGGAAAACTTTCACCTTCAAAGCCT  800

seq1  AGCCTAGAAGAGATTCAGGATTGTCTTCCC-AAAATGTGACTTTAGAGAC  846
      || ||| || | |||||||| || |||||| ||||| |||||||||||||
seq2  AG-CTATAATAAATTCAGGA-TGCCTTCCCAAAAATTTGACTTTAGAGAC  848