BAC Information

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BAC

Clone NameB6Ng01-224F14
Chromosome13 (Build37)
Map Location 107,995,803 - 108,138,497
singlet/doubletdoublet
Overlap geneLOC100040350, LOC100040366
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneApoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224F14.bB6Ng01-224F14.g
ACCGA038832GA038833
length3601,088
definitionB6Ng01-224F14.b B6Ng01-224F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,138,132 - 108,138,497)(107,995,803 - 107,996,885)
sequence
tccaaatactgcatcagggtatcctctccccagttgatgcctttcttctt
gttggcatctgtgtaagagaattcagcagccttgacctgtcttccaccca
aacagataatggagatttggtccagtcttatgcttgccacccttttccac
agtttggcactgggcacacttctgaacaaaaatcttcttgcctttttcaa
catcaccatttttaattctctccaggttggtcaacaccacaaatgtccag
actgaaagacagacatccaggtctccataacattcttataatatgatgag
caaattattctctctctctctctctctctctctctctctctctctctctc
tctctctctc
gaattctttaacatggagatcgggcgacgtttacagaagttgcaagtgtc
agtgtgattatgttgaagtctttaacacagaaactgacctacatttacta
agatgcagcagtgatatttcttttgggcaatttgcctcaggccagttgtt
taactttactgtggctcagtttccttgtatctaaaatgggtaaaatagta
ggaactttgttcatggaatgatggtaggaaagaaatgaacttatatctgt
aagttagagtatcaccagtcttagaggcatctggtgttagctgccatcac
catcttcatggttattatctctttccctaatcattatgtagaggagaata
agttgggcttaaaccatcttcagtaatttgtattccccaactttatttac
tgaagagataaagatatctagtaacttttatgttctccactaacttctct
gtagacttttcttggtagtagtttttggagaaaggtgtcatgggttgaaa
agtcctaactacctatcactcagaatgtgatcttaattgggaataagccc
attgtggaggtgataggtaaaatgacatcatattggagcaggagcttctt
gacccagcaggattggggtgtcaaggtgaaccttggacacagggtttcac
aaagatgttgtattgacggggaaaacatgatgatggggatcaatcaacat
gtccacaccacgggccaacaccatagttaaaagaagcacagaagacgcct
ttcacgggtttcaaggacatagccctggccatgccttgatttcagacttc
tagctatcaaagtatgcagtaataactcctgcctgtaagtgctcagtttg
tggtatctaggtacagcagccataggcacttgacacagatggaaacatac
catcatggattctgactccatcagtctgatcactgaagcttgagatgaag
ttggaatgctgaaaaactgtccacaattgtgtcctttagggttcgatcac
ccaatccagttttttcctcttctggatgtacctctagagcttcttcattc
taataaagaactttcttaacactgtaaaaatgggtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_108138132_108138497
seq2: B6Ng01-224F14.b_51_416 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAATAATTTGCTCATCATATTATAAGAATGTTATGGAGACCTGGATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTTGCTCATCATATTATAAGAATGTTATGGAGACCTGGATGTCT  100

seq1  GTCTTTCAGTCTGGACATTTGTGGTGTTGACCAACCTGGAGAGAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCAGTCTGGACATTTGTGGTGTTGACCAACCTGGAGAGAATTAAA  150

seq1  AATGGTGATGTTGAAAAAGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGATGTTGAAAAAGGCAAGAAGATTTTTGTTCAGAAGTGTGCCCA  200

seq1  GTGCCAAACTGTGGAAAAGGGTGGCAAGCATAAGACTGGACCAAATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAACTGTGGAAAAGGGTGGCAAGCATAAGACTGGACCAAATCTCC  250

seq1  ATTATCTGTTTGGGTGGAAGACAGGTCAAGGCTGCTGAATTCTCTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGTTTGGGTGGAAGACAGGTCAAGGCTGCTGAATTCTCTTACAC  300

seq1  AGATGCCAACAAGAAGAAAGGCATCAACTGGGGAGAGGATACCCTGATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAACAAGAAGAAAGGCATCAACTGGGGAGAGGATACCCTGATGC  350

seq1  AGTATTTGGAGAATTC  366
      ||||||||||||||||
seq2  AGTATTTGGAGAATTC  366

seq1: chr13_107995803_107996885
seq2: B6Ng01-224F14.g_67_1154

seq1  GAATTCTTTAACATGGAGATCGGGCGACGTTTACAGAAGTTGCAAGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACATGGAGATCGGGCGACGTTTACAGAAGTTGCAAGTGTC  50

seq1  AGTGTGATTATGTTGAAGTCTTTAACACAGAAACTGACCTACATTTACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGATTATGTTGAAGTCTTTAACACAGAAACTGACCTACATTTACTA  100

seq1  AGATGCAGCAGTGATATTTCTTTTGGGCAATTTGCCTCAGGCCAGTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGCAGTGATATTTCTTTTGGGCAATTTGCCTCAGGCCAGTTGTT  150

seq1  TAACTTTACTGTGGCTCAGTTTCCTTGTATCTAAAATGGGTAAAATAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTACTGTGGCTCAGTTTCCTTGTATCTAAAATGGGTAAAATAGTA  200

seq1  GGAACTTTGTTCATGGAATGATGGTAGGAAAGAAATGAACTTATATCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTTGTTCATGGAATGATGGTAGGAAAGAAATGAACTTATATCTGT  250

seq1  AAGTTAGAGTATCACCAGTCTTAGAGGCATCTGGTGTTAGCTGCCATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGTATCACCAGTCTTAGAGGCATCTGGTGTTAGCTGCCATCAC  300

seq1  CATCTTCATGGTTATTATCTCTTTCCCTAATCATTATGTAGAGGAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCATGGTTATTATCTCTTTCCCTAATCATTATGTAGAGGAGAATA  350

seq1  AGTTGGGCTTAAACCATCTTCAGTAATTTGTATTCCCCAACTTTATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGCTTAAACCATCTTCAGTAATTTGTATTCCCCAACTTTATTTAC  400

seq1  TGAAGAGATAAAGATATCTAGTAACTTTTATGTTCTCCACTAACTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGATAAAGATATCTAGTAACTTTTATGTTCTCCACTAACTTCTCT  450

seq1  GTAGACTTTTCTTGGTAGTAGTTTTTGGAGAAAGGTGTCATGGGTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTTTCTTGGTAGTAGTTTTTGGAGAAAGGTGTCATGGGTTGAAA  500

seq1  AGTCCTAACTACCTATCACTCAGAATGTGATCTTAATTGGGAATAAGCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAACTACCTATCACTCAGAATGTGATCTTAATTGGGAATAAGCCC  550

seq1  ATTGTGGAGGTGATAGGTAAAATGACATCATATTGGAGCAGGAGCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGAGGTGATAGGTAAAATGACATCATATTGGAGCAGGAGCTTCTT  600

seq1  GACCCAGCAGGATTGGGGTGTCAAGGTGAACCTTGGACACAGGGTTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGCAGGATTGGGGTGTCAAGGTGAACCTTGGACACAGGGTTTCAC  650

seq1  AAAGATGTTGTATTGACGGGGAAAACATGATGATGGGGATCAATCAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTGTATTGACGGGGAAAACATGATGATGGGGATCAATCAACAT  700

seq1  GTCCACACCACGGGCCAACACCATAGTTAAAAGAAGCACAGAAGACGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACACCACGGGCCAACACCATAGTTAAAAGAAGCACAGAAGACGCCT  750

seq1  TTCCACGGGTTTCAAGGACATAGCCCTGGCCATGCCTTGATTTCAGACTT  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TT-CACGGGTTTCAAGGACATAGCCCTGGCCATGCCTTGATTTCAGACTT  799

seq1  CTAGCTATCAAAGTATGCAGTAATAACTCCTGCCTGTAAGGTGCTCAGTT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTAGCTATCAAAGTATGCAGTAATAACTCCTGCCTGTAA-GTGCTCAGTT  848

seq1  TGTGGTATCTAGGTACAGCAGCCATAGGCACTTGACACAGATGGAAACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATCTAGGTACAGCAGCCATAGGCACTTGACACAGATGGAAACAT  898

seq1  ACCATCATGGATTCTGACTCCATCAGTCTGATCACTGAAGCTTGAGATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATGGATTCTGACTCCATCAGTCTGATCACTGAAGCTTGAGATGA  948

seq1  AGTTGGAATGCTGAAAAACTGT-CAC-ATTGTGT-CTTTAGGTTTCGATC  997
      |||||||||||||||||||||| ||| ||||||| ||||||| |||||||
seq2  AGTTGGAATGCTGAAAAACTGTCCACAATTGTGTCCTTTAGGGTTCGATC  998

seq1  A-CCAAT-CAGTTTTTTTCCCTCTTCT-GATGTACCTCTAGAG--TCTTC  1042
      | ||||| |||||||||  |||||||| |||||||||||||||  |||||
seq2  ACCCAATCCAGTTTTTT--CCTCTTCTGGATGTACCTCTAGAGCTTCTTC  1046

seq1  ATTCT-ATAAAAGACTTTCCTAACCACTGTAAAAAT-GGTAAT  1083
      ||||| |||||  |||||| ||| |||||||||||| ||||||
seq2  ATTCTAATAAAGAACTTTCTTAA-CACTGTAAAAATGGGTAAT  1088