BAC Information

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BAC

Clone NameB6Ng01-225E02
Chromosome13 (Build37)
Map Location 81,238,129 - 81,363,879
singlet/doubletdoublet
Overlap geneGpr98
Upstream geneLOC382780, EG666933, Arrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984
Downstream geneLysmd3, Polr3g, 2900024O10Rik, Cetn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225E02.bB6Ng01-225E02.g
ACCGA039497GA039498
length1,077582
definitionB6Ng01-225E02.b B6Ng01-225E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,362,810 - 81,363,879)(81,238,129 - 81,238,710)
sequence
gaattctacaagatgagaaataaatgtaaaatagcaatttaaacctacta
agtattatatactgctctgtaaagcttgttgatgaaggtaaagttataaa
attattgcagtagatgataaatctaacacttaatatgcattgttctaatt
cagggaaaaaaagcttttctctttgcatctgtagtgatttgaatagttat
gcttccccataggttcatatattcataggttgaatgtttggcccacagaa
agtggcactaatagagggtgtggccttgttggaggaagtgtgtcattgtg
aagcagggctttgaagtctcctgtgctcaaactcagcatggtgtgaaaga
cagtcacctcctgcctgcaggatgccatggagcataccatgatgataatg
gactaaacctctgaaactgtaagccagcaccaaataaatgtttccctttg
taagagttgccttggtaatggtgtctcttcacagcaataaaaccctaact
aagacaacatctgtactcaagaaaaaagaaaataaagaaattcaagttca
cacatgagatattttttttattatagatggacactttcttgggcgaaagt
gctaataatgaaataattgaatgaatttcaaactttctgtggagcttcta
aactaaaatctatcctctttctattgttgttgggtgcattgtactgttca
gagggaagtgatcagttagaagactcacaggcttcatgggcagaaattgc
atgctgtacaattcacatcttagaagataaggcataatagattctgaaag
atctgctgagtaaattgtatgataatcactggtgtatacatgcaattgtc
cgctatctggggactggaatctgtttggggagctaccaatatttgtctta
ctctggcattgttgtcatctgcagcagactcctttggctgccagcttcct
gtctatcatgttctcagcgcacagaagctagtaattgctccttcatccaa
gcaaaagaacaatgccagtgtgatgtatgggctgtaaatttcccaattat
ctgtacttttacatcatctgaggtcac

gaattcccatcttcttgcagtagatgggaatgaacagataactacacttg
gacaatgtgcaaagcatggaagagtctgaagcactcagccctaagtgggt
tgtctttatcaagcccttcccttcaaagctcaggaagttatgtgaacaag
aaagtagaaaggctgcaagacctggtgatgttagatgactccaaggaaac
tgcattgttcagacacaacagggctaatgtacatgaacttccagagagac
tgtgacagtttgcactggacccaacaagttcaaaccaaacaaaatctcag
cacagaaaaggggaagtggccatagagtgctattcctatctaagaactat
tctcaattttctgggaaaaaggaaaatcatgttttcctggggtgtgtcac
tgggcacattagccacactccaggctagacccacgtccaggaggagttga
gcaacacaaaatggactctgtgttttttatgtgtttgttttgcatttttt
aaatttgatttttaaaaatgtttgtttttcagatgggggaagaggggaag
gggagaaaggaagtgaagaagaggggaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_81362810_81363879
seq2: B6Ng01-225E02.b_44_1120 (reverse)

seq1  GTGA-CTCAGATGATGTAAAAGTTACAGATAATTGG--AAATTACAG-CC  46
      |||| ||||||||||||||||| |||||||||||||  || |||||| ||
seq2  GTGACCTCAGATGATGTAAAAG-TACAGATAATTGGGAAATTTACAGCCC  49

seq1  ATACATCACACTGGCATTG-TCTTTTGCTTGGATGAA-GAGC-ATTTCTA  93
      ||||||||||||||||||| ||||||||||||||||| |||| ||| |||
seq2  ATACATCACACTGGCATTGTTCTTTTGCTTGGATGAAGGAGCAATTACTA  99

seq1  GCTTCTGTGCGCTGAGAACATGATAGACAGGAAGCTGGCAGCC-AAGGAG  142
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GCTTCTGTGCGCTGAGAACATGATAGACAGGAAGCTGGCAGCCAAAGGAG  149

seq1  TCTGCTGCAGATGACAACAATGCCAGAGTAAGACAAATATTTGGTAGCTC  192
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTGCTGCAGATGACAACAATGCCAGAGTAAGACAAATA-TTGGTAGCTC  198

seq1  CCCAAACAGATTCCAGT-CCCAGATAGCGGACAATTGCATGTATACACCA  241
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCCAAACAGATTCCAGTCCCCAGATAGCGGACAATTGCATGTATACACCA  248

seq1  GTGATTATCATACAATTTACTCAGCAGATCTTTCAGAATCTATTATGCCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTATCATACAATTTACTCAGCAGATCTTTCAGAATCTATTATGCCT  298

seq1  TATCTTCTAAGATGTGAATTGTACAGCATGCAATTTCTGCCCATGAAGCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTCTAAGATGTGAATTGTACAGCATGCAATTTCTGCCCATGAAGCC  348

seq1  TGTGAGTCTTCTAACTGATCACTTCCCTCTGAACAGTACAATGCACCCAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTCTTCTAACTGATCACTTCCCTCTGAACAGTACAATGCACCCAA  398

seq1  CAACAATAGAAAGAGGATAGATTTTAGTTTAGAAGCTCCACAGAAAGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATAGAAAGAGGATAGATTTTAGTTTAGAAGCTCCACAGAAAGTTT  448

seq1  GAAATTCATTCAATTATTTCATTATTAGCACTTTCGCCCAAGAAAGTGTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCATTCAATTATTTCATTATTAGCACTTTCGCCCAAGAAAGTGTC  498

seq1  CATCTATAATAAAAAAAATATCTCATGTGTGAACTTGAATTTCTTTATTT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAATAAAAAAAATATCTCATGTGTGAACTTGAATTTCTTTATTT  548

seq1  TCTTTTTTCTTGAGTACAGATGTTGTCTTAGTTAGGGTTTTATTGCTGTG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTGAGTACAGATGTTGTCTTAGTTAGGGTTTTATTGCTGTG  598

seq1  AAGAGACACCATTACCAAGGCAACTCTTACAAAGGGAAACATTTATTTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACACCATTACCAAGGCAACTCTTACAAAGGGAAACATTTATTTGG  648

seq1  TGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTATCATCATGGTATGCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCTTACAGTTTCAGAGGTTTAGTCCATTATCATCATGGTATGCTC  698

seq1  CATGGCATCCTGCAGGCAGGAGGTGACTGTCTTTCACACCATGCTGAGTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCATCCTGCAGGCAGGAGGTGACTGTCTTTCACACCATGCTGAGTT  748

seq1  TGAGCACAGGAGACTTCAAAGCCCTGCTTCACAATGACACACTTCCTCCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAGGAGACTTCAAAGCCCTGCTTCACAATGACACACTTCCTCCA  798

seq1  ACAAGGCCACACCCTCTATTAGTGCCACTTTCTGTGGGCCAAACATTCAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCCACACCCTCTATTAGTGCCACTTTCTGTGGGCCAAACATTCAA  848

seq1  CCTATGAATATATGAACCTATGGGGAAGCATAACTATTCAAATCACTACA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAATATATGAACCTATGGGGAAGCATAACTATTCAAATCACTACA  898

seq1  GATGCAAAGAGAAAAGCTTTTTTTCCCTGAATTAGAACAATGCATATTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGAGAAAAGCTTTTTTTCCCTGAATTAGAACAATGCATATTAA  948

seq1  GTGTTAGATTTATCATCTACTGCAATAATTTTATAACTTTACCTTCATCA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGATTTATCATCTACTGCAATAATTTTATAACTTTACCTTCATCA  998

seq1  ACAAGCTTTACAGAGCAGTATATAATACTTAGTAGGTTTAAATTGCTATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTTACAGAGCAGTATATAATACTTAGTAGGTTTAAATTGCTATT  1048

seq1  TTACATTTATTTCTCATCTTGTAGAATTC  1070
      |||||||||||||||||||||||||||||
seq2  TTACATTTATTTCTCATCTTGTAGAATTC  1077


seq1: chr13_81238129_81238710
seq2: B6Ng01-225E02.g_63_644

seq1  GAATTCCCATCTTCTTGCAGTAGATGGGAATGAACAGATAACTACACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATCTTCTTGCAGTAGATGGGAATGAACAGATAACTACACTTG  50

seq1  GACAATGTGCAAAGCATGGAAGAGTCTGAAGCACTCAGCCCTAAGTGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTGCAAAGCATGGAAGAGTCTGAAGCACTCAGCCCTAAGTGGGT  100

seq1  TGTCTTTATCAAGCCCTTCCCTTCAAAGCTCAGGAAGTTATGTGAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATCAAGCCCTTCCCTTCAAAGCTCAGGAAGTTATGTGAACAAG  150

seq1  AAAGTAGAAAGGCTGCAAGACCTGGTGATGTTAGATGACTCCAAGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAAAGGCTGCAAGACCTGGTGATGTTAGATGACTCCAAGGAAAC  200

seq1  TGCATTGTTCAGACACAACAGGGCTAATGTACATGAACTTCCAGAGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGTTCAGACACAACAGGGCTAATGTACATGAACTTCCAGAGAGAC  250

seq1  TGTGACAGTTTGCACTGGACCCAACAAGTTCAAACCAAACAAAATCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTTTGCACTGGACCCAACAAGTTCAAACCAAACAAAATCTCAG  300

seq1  CACAGAAAAGGGGAAGTGGCCATAGAGTGCTATTCCTATCTAAGAACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAAGGGGAAGTGGCCATAGAGTGCTATTCCTATCTAAGAACTAT  350

seq1  TCTCAATTTTCTGGGAAAAAGGAAAATCATGTTTTCCTGGGGTGTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTTCTGGGAAAAAGGAAAATCATGTTTTCCTGGGGTGTGTCAC  400

seq1  TGGGCACATTAGCCACACTCCAGGCTAGACCCACGTCCAGGAGGAGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACATTAGCCACACTCCAGGCTAGACCCACGTCCAGGAGGAGTTGA  450

seq1  GCAACACAAAATGGACTCTGTGTTTTTTATGTGTTTGTTTTGCATTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACAAAATGGACTCTGTGTTTTTTATGTGTTTGTTTTGCATTTTTT  500

seq1  AAATTTGATTTTTAAAAATGTTTGTTTTTCAGATGGGGGAAGAGGGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATTTTTAAAAATGTTTGTTTTTCAGATGGGGGAAGAGGGGAAG  550

seq1  GGGAGAAAGGAAGAGAAGAAGAGGGGAAGGGA  582
      ||||||||||||| ||||||||||||||||||
seq2  GGGAGAAAGGAAGTGAAGAAGAGGGGAAGGGA  582


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