BAC Information

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BAC

Clone NameB6Ng01-225K16
Chromosome13 (Build37)
Map Location 36,206,872 - 36,399,963
singlet/doubletdoublet
Overlap geneLyrm4, Fars2, LOC100041590
Upstream geneCdyl, Rpp40, LOC100041568, Ppp1r3g, LOC100042773
Downstream geneLOC666758, Nrn1, F13a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225K16.bB6Ng01-225K16.g
ACCGA039803GA039804
length1,1631,108
definitionB6Ng01-225K16.b B6Ng01-225K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,398,814 - 36,399,963)(36,206,872 - 36,207,988)
sequence
gaattcctcctgagaacaacccaaaatcaagaagagaaacacagaagcaa
aaagagctaaaggctacagctttaagtaaaagaagctccatcagacctct
ctgttggacaggaggctggctcagccattcaccttatcatttctactctc
tctctccatgctcctcaacaatggcatcaaacagccaaaggtctggagaa
aagaataagagaaaaaaatataaaggtcttgaaaattccatccttcagaa
aaccatatcttctggaatcaactgttttatcacagtagtcatgtttccaa
tttagaactctaaaatatcaaaaaaattaatcatttcctattttttgaag
ctttgtcctagattccatttactgaaactttgagtagcataaattgccta
actcaacaaatatgtaagtcccaaacaccccagagaggctccctatcccc
tagagccacacacaggcagctagagcagagcactggggaggtggtattca
tccctctcatagggctccagagctgtgtaattagctacgattgctgaatt
acagcagcccagggaaagaggactaaaatctatttgtttattcaccatga
acgataatgtaaaacacttaattgctttcagccgctgcagctcctgttat
aaagaaaggtcaatgaattactaatttagggtagaaaaaataaattcggg
aattatatttttcaaagagacaatgttgaaaactctacttaaaatggaac
tatgcatagccaaatgacccacatccctgactcttgatcagaacactgat
aaaacattttaaatatatttaaggaactgtaagaagcaagaactcccagt
gatgaaactggcattcattttttcatgttaatagcttttgctactaggga
taatagctaatgcaagcaggaactgaaggcgtgaagtggtggagaaacac
ttgtgatttctattattaacaagataaattacacaatgttctgttgtact
cagattttctgacatttaaaccactacagcccaatcatttcagataccac
ttcaacttgtccttctgcctacatcaaacacatcatctcagcagcttggg
cgaaggagccattctttcagaacatgcttcattctttcggcagagttagt
tgttaggcacact

gaattctatagggtatttgtaaaggcagtcttattttatatgacgctagt
tttatttcatgggacataatgctggcagggttcacagggtttcgatacat
ggtatctggaaaaggagagcacctgattcctgtggaaattacatctgtgt
gaggcacagactactctctgcgtgcgtgtcagcacacagctgcttgtgtt
gaagctcagtctcaattttctgtgaggcacagcctacctttctgtattgg
ctcttaagtcacttccagatggaagtttaggacgaaaaggcccctaagag
gctgtgtagtccagtgaattagtttcatcaccaagaaaactaagtccttg
aggcccagtaactctaaagctgcatattctgttagggttgctatcagtgt
tttacagaacttgtttccagttgggccccccagtgtgaacctctgcttag
tctctgtttattcagtccatttttattcttgagacagacatcttctagac
tgcaaggaacactccaagcatttacttccatgtttcctgtcttccatcaa
tagtaagtaataacaggtatttgtggaaactcctaccaggaggtttagtg
tttatgccccctctcctccaaagccaatgtcatcacataaaatcaaaacc
tatgttcggctgggtatgagctcacttgtccaacccatgtgctattctca
gttgacacgacaactattattttctcagcaggtttctgaaatatgaatta
ctgctgggaaagttggtgcatctgttcacagactaaagtagtgcatagcc
ggacgggtagctcaatccctagagaagggtgcacctagaaccaggtctgt
ttcaggagttaactgccaagacacccagcccatgcctgggcagctgtgaa
aggacagcttgttaagtacttgaaagacttgggaaataaatgaaaattag
caaactgtctggagaaaatgagctggtttcatcagattcttattcttaga
ttcatctcaaggattcagtaattatcataagacaccaaatatcagaaaaa
cctaaactctacagaatgttggtcagaagtttcaaagagcagaaactgtg
aaggtgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_36398814_36399963
seq2: B6Ng01-225K16.b_47_1209 (reverse)

seq1  AGTGTGCCT-ACAACTAACTCTGCAGAA--GATGGAGCATG-TCTG-AAG  45
      ||||||||| |||||||||||||| |||   ||| |||||| |||| |||
seq2  AGTGTGCCTAACAACTAACTCTGCCGAAAGAATGAAGCATGTTCTGAAAG  50

seq1  ATGGGCTCCTTCGCCAGGCCTGCTGAGATGATGTGTTTGATGTGGGCAG-  94
      |  ||||||||||||    |||||||||||||||||||||||| ||||| 
seq2  AATGGCTCCTTCGCCCAAGCTGCTGAGATGATGTGTTTGATGTAGGCAGA  100

seq1  AGGACAAGTTG-AGTGGTATCTGAAATGATT-GGCTGTAGTGGTTTAAAT  142
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  AGGACAAGTTGAAGTGGTATCTGAAATGATTGGGCTGTAGTGGTTTAAAT  150

seq1  GTCAG-AAATCTGAGTAC-ACAGAACATTGTGT-ATTTATCTTGTTTAAT  189
      ||||| |||||||||||| |||||||||||||| |||||||||| |||||
seq2  GTCAGAAAATCTGAGTACAACAGAACATTGTGTAATTTATCTTG-TTAAT  199

seq1  AATAGAAATCAC-AGTGTTTCTCCACCACTTCACGCCTTCAGTTCCTGCT  238
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATCACAAGTGTTTCTCCACCACTTCACGCCTTCAGTTCCTGCT  249

seq1  TGCATTAGCTATTAT-CCTAGTAGCAAAAGCTATTAACATG-AAAAATGA  286
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  TGCATTAGCTATTATCCCTAGTAGCAAAAGCTATTAACATGAAAAAATGA  299

seq1  ATGCCAGTTTCATCACTGGGAGTTCTTGCTTCTTACAGTTCCTTAAATAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTTTCATCACTGGGAGTTCTTGCTTCTTACAGTTCCTTAAATAT  349

seq1  ATTTAAAATGTTTTATCAGTGTTCTGATCAAGAGTCAGGGATGTGGGTCA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATGTTTTATCAGTGTTCTGATCAAGAGTCAGGGATGTGGGTCA  399

seq1  TTTGGCTATGCATAGTTCCATTTTAAGTAGAGTTTTCAACATTGTCTCTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTATGCATAGTTCCATTTTAAGTAGAGTTTTCAACATTGTCTCTT  449

seq1  TGAAAAATATAATTCCCGAATTTATTTTTTCTACCCTAAATTAGTAATTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATATAATTCCCGAATTTATTTTTTCTACCCTAAATTAGTAATTC  499

seq1  ATTGACCTTTCTTTATAACAGGAGCTGCAGCGGCTGAAAGCAATTAAGTG  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTTTCTTTATAACAGGAGCTGCAGCGGCTGAAAGCAATTAAGTG  549

seq1  TTTTACATTATCGTTCATGGTGAATAAACAAATAGATTTTAGTCCTCTTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACATTATCGTTCATGGTGAATAAACAAATAGATTTTAGTCCTCTTT  599

seq1  CCCTGGGCTGCTGTAATTCAGCAATCGTAGCTAATTACACAGCTCTGGAG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGCTGCTGTAATTCAGCAATCGTAGCTAATTACACAGCTCTGGAG  649

seq1  CCCTATGAGAGGGATGAATACCACCTCCCCAGTGCTCTGCTCTAGCTGCC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAGAGGGATGAATACCACCTCCCCAGTGCTCTGCTCTAGCTGCC  699

seq1  TGTGTGTGGCTCTAGGGGATAGGGAGCCTCTCTGGGGTGTTTGGGACTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGCTCTAGGGGATAGGGAGCCTCTCTGGGGTGTTTGGGACTTA  749

seq1  CATATTTGTTGAGTTAGGCAATTTATGCTACTCAAAGTTTCAGTAAATGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTTGAGTTAGGCAATTTATGCTACTCAAAGTTTCAGTAAATGG  799

seq1  AATCTAGGACAAAGCTTCAAAAAATAGGAAATGATTAATTTTTTTGATAT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGACAAAGCTTCAAAAAATAGGAAATGATTAATTTTTTTGATAT  849

seq1  TTTAGAGTTCTAAATTGGAAACATGACTACTGTGATAAAACAGTTGATTC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTTCTAAATTGGAAACATGACTACTGTGATAAAACAGTTGATTC  899

seq1  CAGAAGATATGGTTTTCTGAAGGATGGAATTTTCAAGACCTTTATATTTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATATGGTTTTCTGAAGGATGGAATTTTCAAGACCTTTATATTTT  949

seq1  TTTCTCTTATTCTTTTCTCCAGACCTTTGGCTGTTTGATGCCATTGTTGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTATTCTTTTCTCCAGACCTTTGGCTGTTTGATGCCATTGTTGA  999

seq1  GGAGCATGGAGAGAGAGAGTAGAAATGATAAGGTGAATGGCTGAGCCAGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGGAGAGAGAGAGTAGAAATGATAAGGTGAATGGCTGAGCCAGC  1049

seq1  CTCCTGTCCAACAGAGAGGTCTGATGGAGCTTCTTTTACTTAAAGCTGTA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCCAACAGAGAGGTCTGATGGAGCTTCTTTTACTTAAAGCTGTA  1099

seq1  GCCTTTAGCTCTTTTTGCTTCTGTGTTTCTCTTCTTGATTTTGGGTTGTT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGCTCTTTTTGCTTCTGTGTTTCTCTTCTTGATTTTGGGTTGTT  1149

seq1  CTCAGGAGGAATTC  1150
      ||||||||||||||
seq2  CTCAGGAGGAATTC  1163


seq1: chr13_36206872_36207988
seq2: B6Ng01-225K16.g_68_1175

seq1  GAATTCTATAGGGTATTTGTAAAGGCAGTCTTATTTTATATGACGCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGGGTATTTGTAAAGGCAGTCTTATTTTATATGACGCTAGT  50

seq1  TTTATTTCATGGGACATAATGCTGGCAGGGTTCACAGGGTTTCGATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCATGGGACATAATGCTGGCAGGGTTCACAGGGTTTCGATACAT  100

seq1  GGTATCTGGAAAAGGAGAGCACCTGATTCCTGTGGAAATTACATCTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTGGAAAAGGAGAGCACCTGATTCCTGTGGAAATTACATCTGTGT  150

seq1  GAGGCACAGACTACTCTCTGCGTGCGTGTCAGCACACAGCTGCTTGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACAGACTACTCTCTGCGTGCGTGTCAGCACACAGCTGCTTGTGTT  200

seq1  GAAGCTCAGTCTCAATTTTCTGTGAGGCACAGCCTACCTTTCTGTATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCAGTCTCAATTTTCTGTGAGGCACAGCCTACCTTTCTGTATTGG  250

seq1  CTCTTAAGTCACTTCCAGATGGAAGTTTAGGACGAAAAGGCCCCTAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGTCACTTCCAGATGGAAGTTTAGGACGAAAAGGCCCCTAAGAG  300

seq1  GCTGTGTAGTCCAGTGAATTAGTTTCATCACCAAGAAAACTAAGTCCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTAGTCCAGTGAATTAGTTTCATCACCAAGAAAACTAAGTCCTTG  350

seq1  AGGCCCAGTAACTCTAAAGCTGCATATTCTGTTAGGGTTGCTATCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTAACTCTAAAGCTGCATATTCTGTTAGGGTTGCTATCAGTGT  400

seq1  TTTACAGAACTTGTTTCCAGTTGGGCCCCCCAGTGTGAACCTCTGCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGAACTTGTTTCCAGTTGGGCCCCCCAGTGTGAACCTCTGCTTAG  450

seq1  TCTCTGTTTATTCAGTCCATTTTTATTCTTGAGACAGACATCTTCTAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTTATTCAGTCCATTTTTATTCTTGAGACAGACATCTTCTAGAC  500

seq1  TGCAAGGAACACTCCAAGCATTTACTTCCATGTTTCCTGTCTTCCATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGAACACTCCAAGCATTTACTTCCATGTTTCCTGTCTTCCATCAA  550

seq1  TAGTAAGTAATAACAGGTATTTGTGGAAACTCCTACCAGGAGGTTTAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGTAATAACAGGTATTTGTGGAAACTCCTACCAGGAGGTTTAGTG  600

seq1  TTTATGCCCCCTCTCCTCCAAAGCCAATGTCATCACATAAAATCAAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCCCCTCTCCTCCAAAGCCAATGTCATCACATAAAATCAAAACC  650

seq1  TATGTTCGGCTGGGTATGAGCTCACTTGTCCAACCCATGTGCTATTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCGGCTGGGTATGAGCTCACTTGTCCAACCCATGTGCTATTCTCA  700

seq1  GTTGACACGACAACTATTATTTTCTCAGCAGGTTTCTGAAATATGAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACACGACAACTATTATTTTCTCAGCAGGTTTCTGAAATATGAATTA  750

seq1  CTGCTGGGAAAGTTGGTGCATCTGTTCACAGACTAAAGTAGTGCATAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGGAAAGTTGGTGCATCTGTTCACAGACTAAAGTAGTGCATAGCC  800

seq1  GGACGGGTAGCTCAATCCCTAGAGAAGGGTGCACCTAGAACCAGGTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGGTAGCTCAATCCCTAGAGAAGGGTGCACCTAGAACCAGGTCTGT  850

seq1  TTCAGGAGTTAACTGCCAAGACACCCAGCCCATGCCTGGGCAGCTGTG-A  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTCAGGAGTTAACTGCCAAGACACCCAGCCCATGCCTGGGCAGCTGTGAA  900

seq1  AGGACAGCTTGTTAAGTACTTGAAAGACTTGGGAAATAAATGAAAATAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGACAGCTTGTTAAGTACTTGAAAGACTTGGGAAATAAATGAAAATTAG  950

seq1  CAAACTGTCTGGAGAAAATGAGCTGGTTTCATCAGATTCTTATTCTTAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGTCTGGAGAAAATGAGCTGGTTTCATCAGATTCTTATTCTTAGA  1000

seq1  TTCAATCTCAAAGGATTCAGGTAATTAATCAATAAGACACCAAATATCAG  1049
      ||| ||||| ||||||||| |||||| ||| |||||||||||||||||||
seq2  TTC-ATCTC-AAGGATTCA-GTAATT-ATC-ATAAGACACCAAATATCAG  1045

seq1  AAAAACCCTAAAACTCTACAGAAATGTTGGGTCAGAAGTTTCAAAGAAGC  1099
      |||||||   ||||||||||| |||||| ||||||||||||||||| |||
seq2  AAAAACC--TAAACTCTACAG-AATGTT-GGTCAGAAGTTTCAAAG-AGC  1090

seq1  AGAAACTGTGAAGGTGGA  1117
      ||||||||||||||||||
seq2  AGAAACTGTGAAGGTGGA  1108


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