BAC Information

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BAC

Clone NameB6Ng01-227L05
Chromosome13 (Build37)12 (Build37)
Map Location 12,832,751 - 12,833,90410,330,895 - 10,331,183
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757
Downstream genePrl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227L05.bB6Ng01-227L05.g
ACCGA041303GA041304
length1,155855
definitionB6Ng01-227L05.b B6Ng01-227L05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(12,832,751 - 12,833,904)(10,330,895 - 10,331,183)
sequence
gaattctttatatctattatgaaagccagccacttttaatcagcccacat
tttcattgaagttaacaacattacaaatactatgcaactagtctatccct
aagtagactgtaatttttaaatagtctgaaatataccatgataaaatcat
gagaaggctggtggttgctatacaatggtttctaatattgtttgtttgtt
tgtttgttttctaaaacacggtttctctgtgtagcccggactgtcctgga
actcactctgtagaccaggctgccctcgaactcagaaatccacctgcctc
tgcctccgaagtgctgcgattaaaggcattcaccaccactgcccaatagg
tttctaatattaaagaacagtctcattgaacccagaattgtttcaaagag
aaaatattaaaggatgcttcacttcagtacatcaataagcttcttagaaa
cagaaggttcttgttagcatcgtcttaacaatttttatatcttctcttca
gtcgggctgctaatgcttctccaggtcacatcaacttcaactgataccca
cattgtttactacttccccttcatctcctggtgactggcatcaccaaagt
gagaagactgatgttcccatgacatttcattgtctcccttattctggatt
tccttttcttaggaataatgcaggtaagagaccaatgttgattcattgtt
ctcagtgtttgagatgatggtaattctaatctcttgtgataatttttccc
catcagtcatctttgagatactgtttcttgttggaaaggattactttaac
tgttcattttaatagctgtcaaagcagtctagttactcagtttcaggagt
ggaagagtcccatgtgaactcttacagtccatgtgtggttttcatactct
tggttcccatcgtaagagggtgcaaattgttgactgttgttttgttaagt
gacaggaaaactttttatttgataatagcactcacttcatttgctgttct
ttgcagtgttattcttttgctcagattatagtttcagatatattaatttt
aggtacaatagattatttggcatcaggtttacataacactgaaattatga
gatgatataagaagtaaacttaaaatatgggtcaggatctgttcatgttg
atata
gaattcctgatctttccaagatttctaacatgaagggatgttgaattttg
tcaaatgctttttcagcatctattgaaatgatcatgtggatatttttctt
tgttttttgtttttgtttttttttctttgtagtggattgaactgatggaa
ttctatatattgaatcatccctgcatacctgggatgaagcctacttgata
ttggtgaatggttgttttgatgtgttcttgtatttggtttgtaagaattt
tattattgattattattattattttattatcaattgatctgaagttctct
tcctctgttgggtctttgtgtggtttatgtatgagcataatttgggtgcc
atagaatgaattgggtagttttccttcagtttctattttgtggaacaatt
aagagtatttgtattaggtcttctttaaaggtctggtagaattctgcact
acaaccatcttgtcttggacttttttgttgtcgttgctgggagtctctta
atgtctgcttctattctttacgggttgtggaatgttttatatggtttatc
tgatcttgatttaactttggtacctggtatctgtctagtaaattgtctat
ttcatccagattttccagttttgttgagtatgggcttttgtagtagaatc
agataattatttaaattttcttcatttccattgtttatgtctcccttctc
atttctgctattatttaattttagatactgtttcggtgcttctctggtta
gtctggctttgggtttatctattcttgttgatttttctcaagaaccactc
cctggtttttgttgattcttttgtaaagatctttttgtttctacttgggt
tgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12832751_12833904
seq2: B6Ng01-227L05.b_46_1200 (reverse)

seq1  TATATACAACATGAACAAGAT-CTGACCCAATATTTTAAAGTTTACCTCT  49
      ||||| |||||||||| |||| ||||||| ||||||| |||||||| |||
seq2  TATAT-CAACATGAAC-AGATCCTGACCC-ATATTTT-AAGTTTACTTCT  46

seq1  TATTATCATCTCAT-ATTTCAGTGTTATGTAAA-CTGATGCCAAAT-ATC  96
      || ||||||||||| |||||||||||||||||| |||||||||||| |||
seq2  TA-TATCATCTCATAATTTCAGTGTTATGTAAACCTGATGCCAAATAATC  95

seq1  TATTGTACCTAAAATTAATATATCTGAAACTATAATCTGAGCAAAAGAAT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACCTAAAATTAATATATCTGAAACTATAATCTGAGCAAAAGAAT  145

seq1  -ACACTGCAAAGAACAGCAAATGAAGTGAGTGCTA-TATCAAATAAAAAG  194
       |||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACACTGCAAAGAACAGCAAATGAAGTGAGTGCTATTATCAAATAAAAAG  195

seq1  TTTTCCTGTCACTTAACAAAACAACAGTCAACAATTTGCACCCTCTTACG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGTCACTTAACAAAACAACAGTCAACAATTTGCACCCTCTTACG  245

seq1  ATGGGAACCAAGAGTATGAAAACCACACATGGACTGTAAGAGTTCACATG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAACCAAGAGTATGAAAACCACACATGGACTGTAAGAGTTCACATG  295

seq1  GGACTCTTCCACTCCTGAAACTGAGTAACTAGACTGCTTTGACAGCTATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTTCCACTCCTGAAACTGAGTAACTAGACTGCTTTGACAGCTATT  345

seq1  AAAATGAACAGTTAAAGTAATCCTTTCCAACAAGAAACAGTATCTCAAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACAGTTAAAGTAATCCTTTCCAACAAGAAACAGTATCTCAAAG  395

seq1  ATGACTGATGGGGAAAAATTATCACAAGAGATTAGAATTACCATCATCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGATGGGGAAAAATTATCACAAGAGATTAGAATTACCATCATCTC  445

seq1  AAACACTGAGAACAATGAATCAACATTGGTCTCTTACCTGCATTATTCCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTGAGAACAATGAATCAACATTGGTCTCTTACCTGCATTATTCCT  495

seq1  AAGAAAAGGAAATCCAGAATAAGGGAGACAATGAAATGTCATGGGAACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAAATCCAGAATAAGGGAGACAATGAAATGTCATGGGAACAT  545

seq1  CAGTCTTCTCACTTTGGTGATGCCAGTCACCAGGAGATGAAGGGGAAGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTTCTCACTTTGGTGATGCCAGTCACCAGGAGATGAAGGGGAAGTA  595

seq1  GTAAACAATGTGGGTATCAGTTGAAGTTGATGTGACCTGGAGAAGCATTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAATGTGGGTATCAGTTGAAGTTGATGTGACCTGGAGAAGCATTA  645

seq1  GCAGCCCGACTGAAGAGAAGATATAAAAATTGTTAAGACGATGCTAACAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCGACTGAAGAGAAGATATAAAAATTGTTAAGACGATGCTAACAA  695

seq1  GAACCTTCTGTTTCTAAGAAGCTTATTGATGTACTGAAGTGAAGCATCCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTCTGTTTCTAAGAAGCTTATTGATGTACTGAAGTGAAGCATCCT  745

seq1  TTAATATTTTCTCTTTGAAACAATTCTGGGTTCAATGAGACTGTTCTTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTTCTCTTTGAAACAATTCTGGGTTCAATGAGACTGTTCTTTA  795

seq1  ATATTAGAAACCTATTGGGCAGTGGTGGTGAATGCCTTTAATCGCAGCAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGAAACCTATTGGGCAGTGGTGGTGAATGCCTTTAATCGCAGCAC  845

seq1  TTCGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGGCAGCCTGGTCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGGCAGCCTGGTCTA  895

seq1  CAGAGTGAGTTCCAGGACAGTCCGGGCTACACAGAGAAACCGTGTTTTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGTTCCAGGACAGTCCGGGCTACACAGAGAAACCGTGTTTTAG  945

seq1  AAAACAAACAAACAAACAAACAATATTAGAAACCATTGTATAGCAACCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAACAAACAAACAATATTAGAAACCATTGTATAGCAACCAC  995

seq1  CAGCCTTCTCATGATTTTATCATGGTATATTTCAGACTATTTAAAAATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCTCATGATTTTATCATGGTATATTTCAGACTATTTAAAAATTA  1045

seq1  CAGTCTACTTAGGGATAGACTAGTTGCATAGTATTTGTAATGTTGTTAAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTACTTAGGGATAGACTAGTTGCATAGTATTTGTAATGTTGTTAAC  1095

seq1  TTCAATGAAAATGTGGGCTGATTAAAAGTGGCTGGCTTTCATAATAGATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAAAATGTGGGCTGATTAAAAGTGGCTGGCTTTCATAATAGATA  1145

seq1  TAAAGAATTC  1154
      ||||||||||
seq2  TAAAGAATTC  1155

seq1: chr12_10330895_10331183
seq2: B6Ng01-227L05.g_417_710 (reverse)

seq1  CTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACA  50
      ||||||||| | ||||||||||||||||||||| ||||||||||| ||||
seq2  CTACAAAAGCCCATACTCAACAAAACTGGAAAATCTGGATGAAATAGACA  50

seq1  AATTCCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAGGTTAAT  100
      | || |||||||||||||||||||||||||||||||| |||||| | || 
seq2  ATTTACTAGACAGATACCAGGTACCAAAGTTAAATCAAGATCAGATAAAC  100

seq1  GATCT-AAACAGTCCTATAACCCCTAAAGAAATAGAAGCAGTCATTAATT  149
       || | ||||| ||| | ||||| ||||| ||||||||||| ||||||  
seq2  CATATAAAACATTCC-ACAACCCGTAAAG-AATAGAAGCAGACATTAAGA  148

seq1  GTCTCCCAACCA-------AAAAAAGCCCAGGACCAGATGGATTTAGTGC  192
      | |||||| | |       ||||||| ||| ||| |||||| | ||||||
seq2  GACTCCCAGCAACGACAACAAAAAAGTCCAAGACAAGATGGTTGTAGTGC  198

seq1  AGAGTTCTATCAGACCTTCAAATAAGATCTAATTCCAGTACTTCACAAAC  242
      ||| ||||| |||||||| ||| |||| ||||| | | ||||     || 
seq2  AGAATTCTACCAGACCTTTAAAGAAGACCTAATACAAATACT--CTTAAT  246

seq1  TATTCCCCAAAATAGAAGCAGAAGG-ACTCTATCCAATTCATTCTATG  289
      | |||| |||||||||| | ||||| |  ||| |||||||||||||||
seq2  TGTTCCACAAAATAGAAACTGAAGGAAAACTACCCAATTCATTCTATG  294