BAC Information

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BAC

Clone NameB6Ng01-228A18
Chromosome13 (Build37)
Map Location 4,225,220 - 4,280,372
singlet/doubletdoublet
Overlap geneAkr1c19, Akr1c12
Upstream geneLOC674228, LOC667411, LOC100039182, 2810429I04Rik, Gdi2, Asb13, Calml3, Calm4, Calm5, LOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13
Downstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228A18.bB6Ng01-228A18.g
ACCGA041556GA041557
length1,171759
definitionB6Ng01-228A18.b B6Ng01-228A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,225,220 - 4,226,413)(4,279,614 - 4,280,372)
sequence
gaattctgcctcttgatcttcaggcagcagaaggagactaacttgagctt
ccttgggcacagcttgagcatatagcacctcaaaacccacctccacagta
acttccaacatagtcacaactacttcaacaaggccacacctcttaatagt
tctactctctgtggccaagcaatcaaatacatagagtccattccttttta
agccaccacaccctatcacctcctatgtgacttctgatgttcttaacaat
ctttctcacttgggaatagagtgtattcttcattgtctgactctttctat
tcatcatgtcacatgtaggcggcttctaattttctaatgtagactgtctc
agacttaaactttcagatcctagatatgttatccctgttaaagaatagat
gttactgcactatgtacatggcatctgtaattagtctggcaagtaaatga
ataaatgagtttaaatatatatatacacacaaatatgtacaaataagtat
aaatatggtttgaaggggaataatagcacacatatgttataaaaatttta
ataagccaggggaggtggcacacgcctttaatctcagcactcgggaggca
gaggcaagcggatttctgagttcgaggccagcctggtctacaaagtgagt
tccaggacagacagggctacacagagaaacccagtctcgaaaaaccaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaatttcaataatgtagaagttttac
atagtagagttataggaagcttttaatgaataaagcacacagaagtagat
ttttatgtactagggtgtttataatcaaatggttattttataaatttttc
atatttttacattcaaagcaagtagacattcttagaattgatgtattata
ggaaatttaaaatactaatttcaagctttttgggtttattgtaataaatg
ttgaacatttttgttaaaaatttagatctttatagtcttaaggataatag
gtttctgcttatgctgaaatatattatatctatgatgatcgattgattca
ccttacattccatatcactttccctatctttcctgtacctcctccacacg
agcctaccaaccccctcccatgaatgtgcccccctctagtatccatatcc
taggtctacaccctcccttcc
gaattcatgggaccagggtttgtatcccagcactcatatagaaagctgga
tctcacatgaattgctggttactatatccccaagtgattagacacatttt
tctgatacactcagcatacatacagaaatatgtaacatttgaagcaaata
tattaaacttgtctatgaaatgaatgtgtcagaaatgtttaagtcatggt
gcaggaaaaaaaatccagtaactgccatttgtttttcaaccactaagcac
tattctgtgctgtcccctttactgtgtatttcagggtcacaattctatca
gtgacaataaaaaaattcaggaaaaaattgcagggagaaatttcaaaacg
tttaaacttttcaactttaattgttgattactttttaaataaaattctga
gaagactaaattcagttcatgaggtttttctttttcagtaaataatttac
atattcactttacatcttgactgctgactctgcccctggaccacactaca
gtaccctcagtcctttgcaaagtccctttcccctccctttcgcttctgag
agggtggatgtatcctggatatcccccgacccaggcacatcaagtttttg
caaggctaggtgcatcctttcctactgaagtgagagaaggtaacccagtt
ggggggacagattccacaaaaaacctttagggatagatttgctctagtta
ttggggggacccacatgaagatggagctgaacaactactacatatgtggg
gggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4225220_4226413
seq2: B6Ng01-228A18.b_46_1216

seq1  GAATTCTGCCTCTTGATCTTCAGGCAGCAGAAGGAGACTAACTTGAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTCTTGATCTTCAGGCAGCAGAAGGAGACTAACTTGAGCTT  50

seq1  CCTTGGGCACAGCTTGAGCATATAGCACCTCAAAACCCACCTCCACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGCACAGCTTGAGCATATAGCACCTCAAAACCCACCTCCACAGTA  100

seq1  ACTTCCAACATAGTCACAACTACTTCAACAAGGCCACACCTCTTAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAACATAGTCACAACTACTTCAACAAGGCCACACCTCTTAATAGT  150

seq1  TCTACTCTCTGTGGCCAAGCAATCAAATACATAGAGTCCATTCCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTCTGTGGCCAAGCAATCAAATACATAGAGTCCATTCCTTTTTA  200

seq1  AGCCACCACACCCTATCACCTCCTATGTGACTTCTGATGTTCTTAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACACCCTATCACCTCCTATGTGACTTCTGATGTTCTTAACAAT  250

seq1  CTTTCTCACTTGGGAATAGAGTGTATTCTTCATTGTCTGACTCTTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCACTTGGGAATAGAGTGTATTCTTCATTGTCTGACTCTTTCTAT  300

seq1  TCATCATGTCACATGTAGGCGGCTTCTAATTTTCTAATGTAGACTGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATGTCACATGTAGGCGGCTTCTAATTTTCTAATGTAGACTGTCTC  350

seq1  AGACTTAAACTTTCAGATCCTAGATATGTTATCCCTGTTAAAGAATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAACTTTCAGATCCTAGATATGTTATCCCTGTTAAAGAATAGAT  400

seq1  GTTACTGCACTATGTACATGGCATCTGTAATTAGTCTGGCAAGTAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGCACTATGTACATGGCATCTGTAATTAGTCTGGCAAGTAAATGA  450

seq1  ATAAATGAGTTTAAATATATATATACACACAAATATGTACAAATAAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGTTTAAATATATATATACACACAAATATGTACAAATAAGTAT  500

seq1  AAATATGGTTTGAAGGGGAATAATAGCACACATATGTTATAAAAATTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGGTTTGAAGGGGAATAATAGCACACATATGTTATAAAAATTTTA  550

seq1  ATAAGCCAGGGGAGGTGGCACACGCCTTTAATCTCAGCACTCGGGAGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCAGGGGAGGTGGCACACGCCTTTAATCTCAGCACTCGGGAGGCA  600

seq1  GAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGT  650

seq1  TCCAGGACAGACAGGGCTACACAGAGAAACCCAGTCTCGAAAAACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGACAGGGCTACACAGAGAAACCCAGTCTCGAAAAACCAAAA  700

seq1  AAAAAAAAAAAAAAAAAAAAAAAAAAATTTCAATAATGTAGAAGTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAAAAATTTCAATAATGTAGAAGTTTTAC  750

seq1  ATAGTAGAGTTATAGGAAGCTTTTAATGAATAAAGCACACAGAAGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAGAGTTATAGGAAGCTTTTAATGAATAAAGCACACAGAAGTAGAT  800

seq1  TTTTATGTACTAGGGTGTTTATAATCAAATGGTTA-TTTATAAATTTTTC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTATGTACTAGGGTGTTTATAATCAAATGGTTATTTTATAAATTTTTC  850

seq1  ATATTTTTACATTCAAAGCAAGTAGACATTCTTAGAAATTGATGTATTAT  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATATTTTTACATTCAAAGCAAGTAGACATTCTTAG-AATTGATGTATTAT  899

seq1  AGGAAATTTAAAATACTAATTTCAAGCTTTTTTGGTTTATTGTAATAAAT  949
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGGAAATTTAAAATACTAATTTCAAGCTTTTTGGGTTTATTGTAATAAAT  949

seq1  GTTGAACATTTTTTGTTAAAAATTTTAGATCTTTAATAGTCTTAAGGATT  999
      |||||||| ||||||||||||| ||||||||||| |||||||||||||| 
seq2  GTTGAACA-TTTTTGTTAAAAA-TTTAGATCTTT-ATAGTCTTAAGGAT-  995

seq1  AATTAAGTTTCTGCTTATGCTGAAATATTTATTTATTTATCTATTGATTG  1049
       | || |||||||||||||||||||||| |     | |||||| ||| ||
seq2  -AATAGGTTTCTGCTTATGCTGAAATATAT-----TATATCTA-TGA-TG  1037

seq1  ATCGATTGATTCACTTTACATCCCAATATCAACTTTCCCTATCTTTCCTG  1099
      |||||||||||||| |||||| || ||||| |||||||||||||||||||
seq2  ATCGATTGATTCACCTTACATTCC-ATATC-ACTTTCCCTATCTTTCCTG  1085

seq1  TACCTCTCACACA-GAGCCTACCCCTTCCCCCCTCCCTTTGAAAATGTG-  1147
      ||||||   |||| |||||||||     ||||||||| |    |||||| 
seq2  TACCTCCTCCACACGAGCCTACC---AACCCCCTCCCAT---GAATGTGC  1129

seq1  CCCCCTCTAGTATCACATAACCACTAGGTGCTACACACCTCCCTTCC  1194
      |||||||||||||| |||| |  |||||| |||||| ||||||||||
seq2  CCCCCTCTAGTATC-CATATC--CTAGGT-CTACAC-CCTCCCTTCC  1171

seq1: chr13_4279614_4280372
seq2: B6Ng01-228A18.g_67_825 (reverse)

seq1  CCCCCTCCCCCCACATATGTAGTAGTTGTTCAGCTCCATCTTCATGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCCCCACATATGTAGTAGTTGTTCAGCTCCATCTTCATGTGGG  50

seq1  TCCCCCCAATAACTAGAGCAAATCTATCCCTAAAGGTTTTTTGTGGAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCAATAACTAGAGCAAATCTATCCCTAAAGGTTTTTTGTGGAATC  100

seq1  TGTCCCCCCAACTGGGTTACCTTCTCTCACTTCAGTAGGAAAGGATGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCCCAACTGGGTTACCTTCTCTCACTTCAGTAGGAAAGGATGCAC  150

seq1  CTAGCCTTGCAAAAACTTGATGTGCCTGGGTCGGGGGATATCCAGGATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGCAAAAACTTGATGTGCCTGGGTCGGGGGATATCCAGGATAC  200

seq1  ATCCACCCTCTCAGAAGCGAAAGGGAGGGGAAAGGGACTTTGCAAAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCCTCTCAGAAGCGAAAGGGAGGGGAAAGGGACTTTGCAAAGGAC  250

seq1  TGAGGGTACTGTAGTGTGGTCCAGGGGCAGAGTCAGCAGTCAAGATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGTACTGTAGTGTGGTCCAGGGGCAGAGTCAGCAGTCAAGATGTAA  300

seq1  AGTGAATATGTAAATTATTTACTGAAAAAGAAAAACCTCATGAACTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATATGTAAATTATTTACTGAAAAAGAAAAACCTCATGAACTGAAT  350

seq1  TTAGTCTTCTCAGAATTTTATTTAAAAAGTAATCAACAATTAAAGTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTCTCAGAATTTTATTTAAAAAGTAATCAACAATTAAAGTTGAA  400

seq1  AAGTTTAAACGTTTTGAAATTTCTCCCTGCAATTTTTTCCTGAATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAACGTTTTGAAATTTCTCCCTGCAATTTTTTCCTGAATTTTTT  450

seq1  TATTGTCACTGATAGAATTGTGACCCTGAAATACACAGTAAAGGGGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTCACTGATAGAATTGTGACCCTGAAATACACAGTAAAGGGGACAG  500

seq1  CACAGAATAGTGCTTAGTGGTTGAAAAACAAATGGCAGTTACTGGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATAGTGCTTAGTGGTTGAAAAACAAATGGCAGTTACTGGATTTT  550

seq1  TTTTCCTGCACCATGACTTAAACATTTCTGACACATTCATTTCATAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGCACCATGACTTAAACATTTCTGACACATTCATTTCATAGACA  600

seq1  AGTTTAATATATTTGCTTCAAATGTTACATATTTCTGTATGTATGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAATATATTTGCTTCAAATGTTACATATTTCTGTATGTATGCTGAG  650

seq1  TGTATCAGAAAAATGTGTCTAATCACTTGGGGATATAGTAACCAGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAGAAAAATGTGTCTAATCACTTGGGGATATAGTAACCAGCAATT  700

seq1  CATGTGAGATCCAGCTTTCTATATGAGTGCTGGGATACAAACCCTGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGATCCAGCTTTCTATATGAGTGCTGGGATACAAACCCTGGTCC  750

seq1  CATGAATTC  759
      |||||||||
seq2  CATGAATTC  759