BAC Information

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BAC

Clone NameB6Ng01-228D01
Chromosome13 (Build37)
Map Location 5,763,953 - 5,897,487
singlet/doubletdoublet
Overlap gene1700016G22Rik, Klf6
Upstream geneEG432723
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228D01.bB6Ng01-228D01.g
ACCGA041661GA041662
length1,184735
definitionB6Ng01-228D01.b B6Ng01-228D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,763,953 - 5,765,145)(5,896,756 - 5,897,487)
sequence
gaattcaccatctagccagaattcagaaagagagaaagtgtgaacttatt
caacactaggtctcagaggctgaaaacatttcaagccaagataagattgt
gcagaggctagaagcatctagaacttggcctaggttaacaaatggaagca
gttaaccttcaaaatgaaaattataccatgtagataaaaggtacttttac
aaatgatattaaaaggagggtgctacttatggccaagaagtaacacagac
tagcagcaggtcatgataggaaatagtctgttgaaggaaagttgtcttgg
tctgagaagccagagatgttgaggatggattgaatgcatctgatctgctc
aagtggggtaaagggtggaagctgctgttggaatgctactcataaaagcc
attccagtagaaaagtcagacggatgcttctcattgggacccttgatgga
gcatgtgagatctgcctataccagactaaggacgaaatattgattacttc
cttcctctggaaattgtaagcttcacacttaaaaggagatggacaggggg
taaagagttggcttgatctttcataagcgtaaagtctggagtgtgatttt
caaaacttatgagaaaattccaggcacggctgactgtactagtaatccta
acaatggaaaagccagccagcttaggtgggaaaagaaaaacaaagaaaag
aaacaagttagacagatcctatacatgtaaagatatacacataggtacac
atacacatgacatgcacacaaataaaaataatataggtaacaataattaa
ttttttaaatggggcgtgagttttctagagaataggaggaaggcttgaaa
gaaggaaaaggaaggaagaaatgaaatgatgaattaaaatctcaataaac
agaagatgtaactttaacaagtaaaaggaagtagggaaagatgaccacac
aagctcggatgaacacgcagtagtctaagcactccaaccagctgagcatg
actgttttaaactagcttttaaaaaaagtagggacagagatcgattttat
ttttatttttactactgttagcagccacataataaagcaactcagcaaat
gctgtgcagaataaattttcaattcttacaccagctgaaaagcagcatac
tattaccttgttacataaataataatttagtcta

gaattccaaatagagcactccaaatagaacactcattttttttcaggtct
ggtaaactagtctctccccctccccctcttccctcttcccttccccctcc
ccctctctctccctcctttcctcccttcctcctctttctctctctccctc
cctctgtcactgaataatgaatctacctttgccatgtggaagtgggagac
aggatgctgtttcttgcatatgaccatttctctactcaggtacaatgaag
cgttactattttccaacaggaactttccaagcttccgctcagtccagaag
catcaggtgtgggcagcgttccgtgctgcctggcatctatttctggagat
ctgcattgtaaaggtgggacgtaaattcaagtccatatgttagggagaat
tcagatgttcccaatgtgtctccaagactatttttaaaatcacagctaat
aatttacttgactgacgctccggggcttgcctggatctaaaaatagttgt
tctgcgctttcggagggcggtcagggaacagggtttggggcagtgggaag
cttcatctaataaaatcagtaacatcaagaaatttcagaataaaattgaa
tctagccactcaagatttgattctgataaagacaagtttgacagctgttt
ccccattggttacgttcctagagatgtttttaatgagagtaattaagtgg
tagggaaactgacataatccttgggttttaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5763953_5765145
seq2: B6Ng01-228D01.b_44_1227

seq1  GAATTCACCATCTAGCCAGAATTCAGAAAGAGAGAAAGTGTGAACTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATCTAGCCAGAATTCAGAAAGAGAGAAAGTGTGAACTTATT  50

seq1  CAACACTAGGTCTCAGAGGCTGAAAACATTTCAAGCCAAGATAAGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTAGGTCTCAGAGGCTGAAAACATTTCAAGCCAAGATAAGATTGT  100

seq1  GCAGAGGCTAGAAGCATCTAGAACTTGGCCTAGGTTAACAAATGGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCTAGAAGCATCTAGAACTTGGCCTAGGTTAACAAATGGAAGCA  150

seq1  GTTAACCTTCAAAATGAAAATTATACCATGTAGATAAAAGGTACTTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACCTTCAAAATGAAAATTATACCATGTAGATAAAAGGTACTTTTAC  200

seq1  AAATGATATTAAAAGGAGGGTGCTACTTATGGCCAAGAAGTAACACAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATATTAAAAGGAGGGTGCTACTTATGGCCAAGAAGTAACACAGAC  250

seq1  TAGCAGCAGGTCATGATAGGAAATAGTCTGTTGAAGGAAAGTTGTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGCAGGTCATGATAGGAAATAGTCTGTTGAAGGAAAGTTGTCTTGG  300

seq1  TCTGAGAAGCCAGAGATGTTGAGGATGGATTGAATGCATCTGATCTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAGCCAGAGATGTTGAGGATGGATTGAATGCATCTGATCTGCTC  350

seq1  AAGTGGGGTAAAGGGTGGAAGCTGCTGTTGGAATGCTACTCATAAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGTAAAGGGTGGAAGCTGCTGTTGGAATGCTACTCATAAAAGCC  400

seq1  ATTCCAGTAGAAAAGTCAGACGGATGCTTCTCATTGGGACCCTTGATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGTAGAAAAGTCAGACGGATGCTTCTCATTGGGACCCTTGATGGA  450

seq1  GCATGTGAGATCTGCCTATACCAGACTAAGGACGAAATATTGATTACTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAGATCTGCCTATACCAGACTAAGGACGAAATATTGATTACTTC  500

seq1  CTTCCTCTGGAAATTGTAAGCTTCACACTTAAAAGGAGATGGACAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTGGAAATTGTAAGCTTCACACTTAAAAGGAGATGGACAGGGGG  550

seq1  TAAAGAGTTGGCTTGATCTTTCATAAGCGTAAAGTCTGGAGTGTGATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGTTGGCTTGATCTTTCATAAGCGTAAAGTCTGGAGTGTGATTTT  600

seq1  CAAAACTTATGAGAAAATTCCAGGCACGGCTGACTGTACTAGTAATCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTATGAGAAAATTCCAGGCACGGCTGACTGTACTAGTAATCCTA  650

seq1  ACAATGGAAAAGCCAGCCAGCTTAGGTGGGAAAAGAAAAACAAAGAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAAAAGCCAGCCAGCTTAGGTGGGAAAAGAAAAACAAAGAAAAG  700

seq1  AAACAAGTTAGACAGATCCTATACATGTAAAGATATACACATAGGTACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGTTAGACAGATCCTATACATGTAAAGATATACACATAGGTACAC  750

seq1  ATACACATGACATGCACACAAATAAAAATAATATAGGTAACAATAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATGACATGCACACAAATAAAAATAATATAGGTAACAATAATTAA  800

seq1  TTTTTTAAATGGGGCGTGAGTTTTCTAGAGAATAGGAGGAAGGCTTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATGGGGCGTGAGTTTTCTAGAGAATAGGAGGAAGGCTTGAAA  850

seq1  GAAGGAAAAGGAAGGAAGAAATGAAATGATGAATTAAAATCTCAATAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAGGAAGGAAGAAATGAAATGATGAATTAAAATCTCAATAAAC  900

seq1  AGAAGATGTAACTTTAACAAGTAAAAGGAAGTAGGGAAAGATGACCACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGTAACTTTAACAAGTAAAAGGAAGTAGGGAAAGATGACCACAC  950

seq1  AAGGCTCGGATGAACACGCAGTAGTCTAAGCACTCCAACCAGCTGAGCAT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GCTCGGATGAACACGCAGTAGTCTAAGCACTCCAACCAGCTGAGCAT  999

seq1  GACTGTTTTAAACTAGCTTTTAAAAAAAGTAGGGACAAGAGAATCGA-TT  1049
      |||||||||||||||||||||||||||||||||||| |||| ||||| ||
seq2  GACTGTTTTAAACTAGCTTTTAAAAAAAGTAGGGAC-AGAG-ATCGATTT  1047

seq1  TATTTTTATTTTTACTACTTGTTAGCAGCCACAT-ATAAAGCAACTCAGC  1098
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TATTTTTATTTTTACTAC-TGTTAGCAGCCACATAATAAAGCAACTCAGC  1096

seq1  AAATGCTGTGCAGAATAAATTTTCCATTCTTTACACCAGGCCTGAAAAGC  1148
      |||||||||||||||||||||||| |||| |||||||||  |||||||||
seq2  AAATGCTGTGCAGAATAAATTTTCAATTC-TTACACCAG--CTGAAAAGC  1143

seq1  AAGCATACTATTATCTTGTACTATAAATAATAATTTTTAAGTCTA  1193
       |||||||||||| |||||   ||||||||||||||   ||||||
seq2  -AGCATACTATTACCTTGTTACATAAATAATAATTT---AGTCTA  1184


seq1: chr13_5896756_5897487
seq2: B6Ng01-228D01.g_65_799 (reverse)

seq1  AGTGTTAAAACCCAAGGATTATGTCAGGTTCCCTACCACTTAATTACTCT  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTGTTAAAACCCAAGGATTATGTCAGTTTCCCTACCACTTAATTACTCT  50

seq1  CCTT-AAAACATCTCTAGGAACGTAACCAATGGGGAAACAGCTGTCAAAC  99
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAACATCTCTAGGAACGTAACCAATGGGGAAACAGCTGTCAAAC  100

seq1  TTGTCTTTATCAGAATCAAATCTTGAGTGGCTAGATTCAATTTTATTCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTATCAGAATCAAATCTTGAGTGGCTAGATTCAATTTTATTCTG  150

seq1  -AATTTCTTGATGTTACTGATTTTATTAGATGAAGCTTCCCACTGCCCC-  197
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAATTTCTTGATGTTACTGATTTTATTAGATGAAGCTTCCCACTGCCCCA  200

seq1  AACCCTGTTCCCTGACCGCCCTCCGAAAGCGCAGAACAACTATTTTTAGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTTCCCTGACCGCCCTCCGAAAGCGCAGAACAACTATTTTTAGA  250

seq1  TCCAGGCAAGCCCCGGAGCGTCAGTCAAGTAAATTATTAGCTGTGATTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAAGCCCCGGAGCGTCAGTCAAGTAAATTATTAGCTGTGATTTT  300

seq1  AAAAATAGTCTTGGAGACACATTGGGAACATCTGAATTCTCCCTAACATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGTCTTGGAGACACATTGGGAACATCTGAATTCTCCCTAACATA  350

seq1  TGGACTTGAATTTACGTCCCACCTTTACAATGCAGATCTCCAGAAATAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGAATTTACGTCCCACCTTTACAATGCAGATCTCCAGAAATAGA  400

seq1  TGCCAGGCAGCACGGAACGCTGCCCACACCTGATGCTTCTGGACTGAGCG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCAGCACGGAACGCTGCCCACACCTGATGCTTCTGGACTGAGCG  450

seq1  GAAGCTTGGAAAGTTCCTGTTGGAAAATAGTAACGCTTCATTGTACCTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTGGAAAGTTCCTGTTGGAAAATAGTAACGCTTCATTGTACCTGA  500

seq1  GTAGAGAAATGGTCATATGCAAGAAACAGCATCCTGTCTCCCACTTCCAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAATGGTCATATGCAAGAAACAGCATCCTGTCTCCCACTTCCAC  550

seq1  ATGGCAAAGGTAGATTCATTATTCAGTGACAGAGGGAGGGAGAGAGAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAGGTAGATTCATTATTCAGTGACAGAGGGAGGGAGAGAGAGAA  600

seq1  AGAGGAGGAAGGGAGGAAAGGAGGGAGAGAGAGGGGGAGGGGGAAGGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGAAGGGAGGAAAGGAGGGAGAGAGAGGGGGAGGGGGAAGGGAA  650

seq1  GAGGGAAGAGGGGGAGGGGGAGAGACTAGTTTACCAGACCTGAAAAAAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGAGGGGGAGGGGGAGAGACTAGTTTACCAGACCTGAAAAAAAA  700

seq1  TGAGTGTTCTATTTGGAGTGCTCTATTTGGAATTC  732
      |||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTCTATTTGGAGTGCTCTATTTGGAATTC  735


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