BAC Information

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BAC

Clone NameB6Ng01-229O05
Chromosome13 (Build37)
Map Location 82,986,620 - 83,155,653
singlet/doubletdoublet
Overlap geneLOC667018
Upstream geneLOC238756
Downstream geneMef2c, LOC100043111, LOC623241, LOC432789, 2810049E08Rik, LOC100043119, LOC667081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229O05.bB6Ng01-229O05.g
ACCGA042899GA042900
length1,170436
definitionB6Ng01-229O05.b B6Ng01-229O05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,986,620 - 82,987,800)(83,155,236 - 83,155,653)
sequence
gaattcagatgccagaatacagtagctgtggatagcatttatatttagta
agactgcaatgtactcatttgaagttggaagatgagtatttattgaagca
gctggcaaatcagcaggaaaatgctgattttgaaaaaacgattcttcttc
tgtggaatcagacctactgtatttagcaacactattataattgaacacaa
aaactgcattaaagtaccattaagatggagacagaaacccagaaaaaaaa
atgagagaattctgagttaaaggctgtcacagcattcctgaaccagctct
tttaagtataaatgcagcaacgttctttcaaggatgacatgaaatggtca
cagtcaaatgcaatcaggattctttcccagggtgacctaatacagcccat
ctatctctgtactaaggagtatcagtttcacccttcatggaattaaaaca
cctgaaaattagatgaaatacaaatctcagcttaccaggagcagagtcta
acctttccttgaaatagtctttgggttgatgggaatactctctaatttca
atgaccctttagctatcacttagaagcacagaaatggacttttataagga
tataagggaattaggtgtttctgtaaatattattgttcaaatgagaacat
tgcaaagttataattcatacaacttgcctaaagttacacaagtatttctg
gggaaaatcatatcttggggccttgaacccagtatccttccaggcacacc
tctgtactgcatactactgaggtcttccccgcacacccctggactgcata
ctactgtagtcttccccgcacacccctggactgcatactactatagtctt
ccccgcacacccctggactgcatactactgtagtcttcccagcacaccct
gtactgcatactacggtagtcttcccagcacacccctgtactgcatacta
ctgtagtcttcccagcacacccctgtactgcatactactgtagtcttccc
cacacacccctgtactgcatactactgtagtctggtcagggctcatgttc
tgatgcatggaattaagacagaactttgtacaatctagctgatttaaggc
caccaggaggagtagctataacaggtggacattttgtggaagcactatgg
gttacatttccccctgaatt

actggataactattaatcctcacttcacattgtgctctaaaggctcagcc
agtgaattctgaaggcccggatttccaggttttcttatctgtaatacaaa
cataaagacataatatcatttcctgctactctcaaagggcatcgagcaag
ctggctagcatcactgcaacattttaattactggtgcttactacaatttg
caataattacagttcatttagagagcctgttcttaattgcagacactgct
aaagtaacgattgaataaaaaataaagtgtaatttcatatatgggtgcat
ctttctagtttatgtatatatgtttccttgtgcatatgtgtgcatgtatg
tgtgtgtgtttgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcg
tgtgctaacagacttttgagtgtgtgcctctctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82986620_82987800
seq2: B6Ng01-229O05.b_45_1214

seq1  GAATTCAGATGCCAGAATACAGTAGCTGTGGATAGCATTTATATTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGCCAGAATACAGTAGCTGTGGATAGCATTTATATTTAGTA  50

seq1  AGACTGCAATGTACTCATTTGAAGTTGGAAGATGAGTATTTATTGAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCAATGTACTCATTTGAAGTTGGAAGATGAGTATTTATTGAAGCA  100

seq1  GCTGGCAAATCAGCAGGAAAATGCTGATTTTGAAAAAACGATTCTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAAATCAGCAGGAAAATGCTGATTTTGAAAAAACGATTCTTCTTC  150

seq1  TGTGGAATCAGACCTACTGTATTTAGCAACACTATTATAATTGAACACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATCAGACCTACTGTATTTAGCAACACTATTATAATTGAACACAA  200

seq1  AAACTGCATTAAAGTACCATTAAGATGGAGACAGAAACCCAGAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATTAAAGTACCATTAAGATGGAGACAGAAACCCAGAAAAAAAA  250

seq1  ATGAGAGAATTCTGAGTTAAAGGCTGTCACAGCATTCCTGAACCAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAATTCTGAGTTAAAGGCTGTCACAGCATTCCTGAACCAGCTCT  300

seq1  TTTAAGTATAAATGCAGCAACGTTCTTTCAAGGATGACATGAAATGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTATAAATGCAGCAACGTTCTTTCAAGGATGACATGAAATGGTCA  350

seq1  CAGTCAAATGCAATCAGGATTCTTTCCCAGGGTGACCTAATACAGCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAATGCAATCAGGATTCTTTCCCAGGGTGACCTAATACAGCCCAT  400

seq1  CTATCTCTGTACTAAGGAGTATCAGTTTCACCCTTCATGGAATTAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTGTACTAAGGAGTATCAGTTTCACCCTTCATGGAATTAAAACA  450

seq1  CCTGAAAATTAGATGAAATACAAATCTCAGCTTACCAGGAGCAGAGTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAATTAGATGAAATACAAATCTCAGCTTACCAGGAGCAGAGTCTA  500

seq1  ACCTTTCCTTGAAATAGTCTTTGGGTTGATGGGAATACTCTCTAATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCTTGAAATAGTCTTTGGGTTGATGGGAATACTCTCTAATTTCA  550

seq1  ATGACCCTTTAGCTATCACTTAGAAGCACAGAAATGGACTTTTATAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTTTAGCTATCACTTAGAAGCACAGAAATGGACTTTTATAAGGA  600

seq1  TATAAGGGAATTAGGTGTTTCTGTAAATATTATTGTTCAAATGAGAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGGAATTAGGTGTTTCTGTAAATATTATTGTTCAAATGAGAACAT  650

seq1  TGCAAAGTTATAATTCATACAACTTGCCTAAAGTTACACAAGTATTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGTTATAATTCATACAACTTGCCTAAAGTTACACAAGTATTTCTG  700

seq1  GGGAAAATCATATCTTGGGGCCTTGAACCCAGTATCCTTCCAGGCACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAATCATATCTTGGGGCCTTGAACCCAGTATCCTTCCAGGCACACC  750

seq1  TCTGTACTGCATACTACTGAGGTCTTCCCCGCACACCCCTGGACTGCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTGCATACTACTGAGGTCTTCCCCGCACACCCCTGGACTGCATA  800

seq1  CTACTGTAGTCTTCCCCGCACACCCCTGGACTGCATACTACTATAGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTAGTCTTCCCCGCACACCCCTGGACTGCATACTACTATAGTCTT  850

seq1  CCCCGCACACCCCTGGACTGCATACTACTGTAGTCTTCCCAGCACACCCC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCCGCACACCCCTGGACTGCATACTACTGTAGTCTTCCCAGCACA-CCC  899

seq1  TGTACTGCATACTACGGTAGTCTTCCCAGCACACCCCTGTACTGCATACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGCATACTACGGTAGTCTTCCCAGCACACCCCTGTACTGCATACT  949

seq1  ACTGTAGTCTTCCCAGCACACCCCTGTACTGCATACTACTGTAGTCTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGTCTTCCCAGCACACCCCTGTACTGCATACTACTGTAGTCTTCC  999

seq1  CCACACACCCCTGTACTGCATACTACTGTAGTCTGGCAGGGGCTCATGTT  1050
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  CCACACACCCCTGTACTGCATACTACTGTAGTCTGGTCAGGGCTCATGTT  1049

seq1  CTGATGCATGAAATAAAGACAG-ACTTTGTACCAATTCTAGGCTGATTTA  1099
      |||||||||| ||| ||||||| |||||||||  | |||| |||||||| 
seq2  CTGATGCATGGAATTAAGACAGAACTTTGTAC--AATCTA-GCTGATTT-  1095

seq1  AAGGCAACCAGGAGGGAAGTAGCTATAAACAGTGGGACATTTTGT-GAAG  1148
      ||||| |||||||||  ||||||||| |||||  ||||||||||| ||||
seq2  AAGGCCACCAGGAGG--AGTAGCTAT-AACAGGTGGACATTTTGTGGAAG  1142

seq1  CACTTAATGGTTACTATTTTCTCCTCCTGAATT  1181
      ||| ||  |||||| |||   ||| ||||||||
seq2  CAC-TATGGGTTAC-ATT---TCCCCCTGAATT  1170


seq1: chr13_83155236_83155653
seq2: B6Ng01-229O05.g_67_498 (reverse)

seq1  CACACAC--------------GCACACACACACACACACACACACACACA  36
      |||||||              |||||| ||||| ||||||||||||||||
seq2  CACACACTCAAAAGTCTGTTAGCACACGCACACGCACACACACACACACA  50

seq1  CACACACACATACACAAACACACACACATACATGCACACATATGCACAAG  86
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATACACAAACACACACACATACATGCACACATATGCACAAG  100

seq1  GAAACATATATACATAAACTAGAAAGATGCACCCATATATGAAATTACAC  136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATATATACATAAACTAGAAAGATGCACCCATATATGAAATTACAC  150

seq1  TTTATTTTTTATTCAATCGTTACTTTAGCAGTGTCTGCAATTAAGAACAG  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTATTCAATCGTTACTTTAGCAGTGTCTGCAATTAAGAACAG  200

seq1  GCTCTCTAAATGAACTGTAATTATTGCAAATTGTAGTAAGCACCAGTAAT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTAAATGAACTGTAATTATTGCAAATTGTAGTAAGCACCAGTAAT  250

seq1  TAAAATGTTGCAGTGATGCTAGCCAGCTTGCTCGATGCCCTTTGAGAGTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTGCAGTGATGCTAGCCAGCTTGCTCGATGCCCTTTGAGAGTA  300

seq1  GCAGGAAATGATATTATGTCTTTATGTTTGTATTACAGATAAGAAAACCT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAAATGATATTATGTCTTTATGTTTGTATTACAGATAAGAAAACCT  350

seq1  GGAAATCCGGGCCTTCAGAATTCACTGGCTGAGCCTTTAGAGCACAATGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCGGGCCTTCAGAATTCACTGGCTGAGCCTTTAGAGCACAATGT  400

seq1  GAAGTGAGGATTAATAGTTATCCAGTGAATTC  418
      ||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGATTAATAGTTATCCAGTGAATTC  432


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