BAC Information

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BAC

Clone NameB6Ng01-230I08
Chromosome13 (Build37)
Map Location 109,925,729 - 110,114,150
singlet/doubletdoublet
Overlap genePde4d, LOC100040968
Upstream geneNdufa12l, Ercc8, LOC668123, LOC621498, Elovl7, LOC668129, LOC100040524, Depdc1b, EG668144, LOC621663
Downstream geneLOC100040577, Rab3c, EG432803
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230I08.bB6Ng01-230I08.g
ACCGA043365GA043366
length1,0971,121
definitionB6Ng01-230I08.b B6Ng01-230I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,925,729 - 109,926,818)(110,113,020 - 110,114,150)
sequence
gaattcaataaagggacgtagattataataatagcagtgaggaaaatagc
tctatcctggtataaacattttgtttgcacatgaacaaggtgtgatgtta
cttgctatttctccatctaaaatcactttggagtctccaaataatcttat
attttttaatgattaagaagtcaaaaccagtagagcgagaaataaaacta
tttcctttcacaaatatcatcacaccaggatgactctgtctttctagtct
tacagagtgtctctaccgcaaggacactttttgttttggcaattgatatt
cccttctggtgcatattagaattttccaatgtttatactccagtttttta
ttcataacatgcaaagccaattcatgtgatgaaattttccatcccatggt
gggaatagatctgatgtgatgttaccttaagatgcttcaagacagtgtta
agactgaaacaagtatttcatgggaatcactaaaagtctttatttctaat
tgttgttgctactaaaatattgtatcagaccattttgatttcttatttcc
acaaatgtttttacttgtctaggaacattgtgttagcttgcacatactgg
cataagacattagtttccaaaaacacaaagttcaaatgcacgataaatac
tgtgacttcttttctatcatcaatcatttctctgcctctaaacagcaaca
tgtatatgtttatatataatgtgtgtaatatatatatatattgcacatat
acatatatatgtgcaatattatagaaacactttaaatgaattctctcctc
ttcatttgttcaatgcaatgttgacctatctttatggaagttttgaaata
tcaccaattttatatggtcttgtctcatgcaatctcatatacttttaagc
cttagagcagaaacccttttatttttttttccttccagactttttggctc
aatcagacttcttgcatggctggcgtggcaaatcccactccgtatctggt
gagcctgtgcagttagcagccttagctcagattccccactgctcagctgt
tcaacagccccaacatgcaaggttgtaggcttaaaacagcgaatggc

gaattcaataaaactaactggtgggtacttttctgtttttcaagaacctg
attccctaccccgagccccagctttaccatataaaaatattagtacattt
aactctgtatgttcttgaatggcatgcagtacctctgcagcctggacttc
aggtcaaccatgatataggcataaaaaagtcctacctcaactttcatggg
aggtgggggaaaaaatgaaacttggccacttgaacatattatgttggaca
tatgcatgtctgttttgacgagaattagtagagttttctaaggtgccaca
gggctgactacttcactcatttacctatagatattagtgaaagctgttta
aacccaggcttcccttatttacaaatggcagcattcacaccacagctatc
gagagtcaacatataaagagctgggaaagttttcccacttgccagtgtaa
actggctgcactttgagcacagctgtttctgcatgagatttttctcttgg
tgggattttgtattgactgtgctcctgtggcatgaatacagtcaatgaaa
gattgtttgggggcttgataagaaaagaggccagaaacaattgctcccac
gggccctacccttccttaataaccaactgctgtctggagtcctgcaaaaa
cccatcatccatcatatcagttgcatacaaagggtctaggactttcttgc
cctgctctttagcctgagaaagacacagacccatctggaaggcatttttt
aagataaaactgacagtaaggagctaggtctcagctgtaaacattagaca
tattgcccacacttctcgatttccactcaccattgagagttggttttcct
gaactgagttctctaaaaagagaacacaagatattttgtctcctggctag
ctatatatatgtttgcacagtttgccttctgtcttataacactgctaata
aaattagatgcttttttttcattttttattaggtatttaagctcattaca
ttcatgctataccaaaagtcccccatacccacctacccccacttccccta
cccaccacttcccctttggacctggcgttccctgtactgggccattatag
tgcgtgtccaatggaccctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_109925729_109926818
seq2: B6Ng01-230I08.b_43_1139

seq1  GAATTCAATAAAGGGACGTAGATTATAATAATAGCAGTGAGGAAAATAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAGGGACGTAGATTATAATAATAGCAGTGAGGAAAATAGC  50

seq1  TCTATCCTGGTATAAACATTTTGTTTGCACATGAACAAGGTGTGATGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCCTGGTATAAACATTTTGTTTGCACATGAACAAGGTGTGATGTTA  100

seq1  CTTGCTATTTCTCCATCTAAAATCACTTTGGAGTCTCCAAATAATCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTATTTCTCCATCTAAAATCACTTTGGAGTCTCCAAATAATCTTAT  150

seq1  ATTTTTTAATGATTAAGAAGTCAAAACCAGTAGAGCGAGAAATAAAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATGATTAAGAAGTCAAAACCAGTAGAGCGAGAAATAAAACTA  200

seq1  TTTCCTTTCACAAATATCATCACACCAGGATGACTCTGTCTTTCTAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCACAAATATCATCACACCAGGATGACTCTGTCTTTCTAGTCT  250

seq1  TACAGAGTGTCTCTACCGCAAGGACACTTTTTGTTTTGGCAATTGATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTGTCTCTACCGCAAGGACACTTTTTGTTTTGGCAATTGATATT  300

seq1  CCCTTCTGGTGCATATTAGAATTTTCCAATGTTTATACTCCAGTTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGGTGCATATTAGAATTTTCCAATGTTTATACTCCAGTTTTTTA  350

seq1  TTCATAACATGCAAAGCCAATTCATGTGATGAAATTTTCCATCCCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACATGCAAAGCCAATTCATGTGATGAAATTTTCCATCCCATGGT  400

seq1  GGGAATAGATCTGATGTGATGTTACCTTAAGATGCTTCAAGACAGTGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATAGATCTGATGTGATGTTACCTTAAGATGCTTCAAGACAGTGTTA  450

seq1  AGACTGAAACAAGTATTTCATGGGAATCACTAAAAGTCTTTATTTCTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAACAAGTATTTCATGGGAATCACTAAAAGTCTTTATTTCTAAT  500

seq1  TGTTGTTGCTACTAAAATATTGTATCAGACCATTTTGATTTCTTATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGCTACTAAAATATTGTATCAGACCATTTTGATTTCTTATTTCC  550

seq1  ACAAATGTTTTTACTTGTCTAGGAACATTGTGTTAGCTTGCACATACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTTTTACTTGTCTAGGAACATTGTGTTAGCTTGCACATACTGG  600

seq1  CATAAGACATTAGTTTCCAAAAACACAAAGTTCAAATGCACGATAAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGACATTAGTTTCCAAAAACACAAAGTTCAAATGCACGATAAATAC  650

seq1  TGTGACTTCTTTTCTATCATCAATCATTTCTCTGCCTCTAAACAGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTTCTTTTCTATCATCAATCATTTCTCTGCCTCTAAACAGCAACA  700

seq1  TGTATATGTTTATATATAATGTGTGTAATATATATATATATTGCACATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGTTTATATATAATGTGTGTAATATATATATATATTGCACATAT  750

seq1  ACATATATATGTGCAATATTATAGAAACACTTTAAATGAATTCTCTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATGTGCAATATTATAGAAACACTTTAAATGAATTCTCTCCTC  800

seq1  TTCATTTGTTCAATGCAATGTTGACCTATCTTTATGGAAGTTTTGAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGTTCAATGCAATGTTGACCTATCTTTATGGAAGTTTTGAAATA  850

seq1  TCACCAATTTTATATGGTCTTGTCTCATGCAATCTCATATACTTTTAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAATTTTATATGGTCTTGTCTCATGCAATCTCATATACTTTTAAGC  900

seq1  CTTAGAGCAGAAAACCTTTTA-TATTTTTTCCTTCCAGAC-TTTTGGCTC  948
      ||||||||||||| ||||||| | |||||||||||||||| |||||||||
seq2  CTTAGAGCAGAAACCCTTTTATTTTTTTTTCCTTCCAGACTTTTTGGCTC  950

seq1  AATCAGACTTC-TGCATGGCTGGCGTGGCAAATCCCACTCCCGTATCTGG  997
      ||||||||||| ||||||||||||||||||||||||||| ||||||||||
seq2  AATCAGACTTCTTGCATGGCTGGCGTGGCAAATCCCACT-CCGTATCTGG  999

seq1  TGAG-CTGTGCAGTTAGCAGCCTTAGCTCAGATTCCCCACTGCTCAGCTG  1046
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTGTGCAGTTAGCAGCCTTAGCTCAGATTCCCCACTGCTCAGCTG  1049

seq1  -TCAACAGCCCC-ACATGCAAG--TGTAGCCTTAAAACAAGCG-ATGGC  1090
       ||||||||||| |||||||||  ||||| |||||||| |||| |||||
seq2  TTCAACAGCCCCAACATGCAAGGTTGTAGGCTTAAAAC-AGCGAATGGC  1097


seq1: chr13_110113020_110114150
seq2: B6Ng01-230I08.g_64_1184 (reverse)

seq1  AGA-GGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACG  49
      ||| || |||||||||||||  ||| || ||| ||||||||| |||||||
seq2  AGAGGGTCCATTGGACACGC--ACTATA-ATGGCCCAGTACA-GGGAACG  46

seq1  CCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGG-AGTGGGGGTAGGTGG  98
      ||||| ||  ||||||| ||| |||||||||||| |||||||||||||||
seq2  CCAGGTCC--AAAGGGGAAGT-GGTGGGTAGGGGAAGTGGGGGTAGGTGG  93

seq1  GTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGC-TAAATAC  147
      |||||||||||||||||||||||||    ||||| ||||||| |||||||
seq2  GTATGGGGGACTTTTGGTATAGCAT---GAATGT-AATGAGCTTAAATAC  139

seq1  CTAATAAAAAATGGAAAAAAAAGCATCTAATTTTATTAGCAGTGTTATAA  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAAT-GAAAAAAAAGCATCTAATTTTATTAGCAGTGTTATAA  188

seq1  GACAGAAGGCAAACTGTGCAAACATATATATAGCTAGCCCAGGAGACAAA  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GACAGAAGGCAAACTGTGCAAACATATATATAGCTAG-CCAGGAGACAAA  237

seq1  ATATCTTGTGTTCTCTTTTTAGAGAACTCAGTTCAGGAAAACCAACTCTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGTGTTCTCTTTTTAGAGAACTCAGTTCAGGAAAACCAACTCTC  287

seq1  AATGGTGAGTGGAAATCGAGAAGTGTGGGCAATATGTCTAATGTTTACAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGAGTGGAAATCGAGAAGTGTGGGCAATATGTCTAATGTTTACAG  337

seq1  CTGAGACCTAGCTCCTTACTGTCAGTTTTATCTTAAAAAATGCCTTCCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACCTAGCTCCTTACTGTCAGTTTTATCTTAAAAAATGCCTTCCAG  387

seq1  ATGGGTCTGTGTCTTTCTCAGGCTAAAGAGCAGGGCAAGAAAGTCCTAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCTGTGTCTTTCTCAGGCTAAAGAGCAGGGCAAGAAAGTCCTAGA  437

seq1  CCCTTTGTATGCAACTGATATGATGGATGATGGGTTTTTGCAGGACTCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTATGCAACTGATATGATGGATGATGGGTTTTTGCAGGACTCCA  487

seq1  GACAGCAGTTGGTTATTAAGGAAGGGTAGGGCCCGTGGGAGCAATTGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGTTGGTTATTAAGGAAGGGTAGGGCCCGTGGGAGCAATTGTTT  537

seq1  CTGGCCTCTTTTCTTATCAAGCCCCCAAACAATCTTTCATTGACTGTATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCTTTTCTTATCAAGCCCCCAAACAATCTTTCATTGACTGTATT  587

seq1  CATGCCACAGGAGCACAGTCAATACAAAATCCCACCAAGAGAAAAATCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCACAGGAGCACAGTCAATACAAAATCCCACCAAGAGAAAAATCTC  637

seq1  ATGCAGAAACAGCTGTGCTCAAAGTGCAGCCAGTTTACACTGGCAAGTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGAAACAGCTGTGCTCAAAGTGCAGCCAGTTTACACTGGCAAGTGG  687

seq1  GAAAACTTTCCCAGCTCTTTATATGTTGACTCTCGATAGCTGTGGTGTGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTTCCCAGCTCTTTATATGTTGACTCTCGATAGCTGTGGTGTGA  737

seq1  ATGCTGCCATTTGTAAATAAGGGAAGCCTGGGTTTAAACAGCTTTCACTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCCATTTGTAAATAAGGGAAGCCTGGGTTTAAACAGCTTTCACTA  787

seq1  ATATCTATAGGTAAATGAGTGAAGTAGTCAGCCCTGTGGCACCTTAGAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATAGGTAAATGAGTGAAGTAGTCAGCCCTGTGGCACCTTAGAAA  837

seq1  ACTCTACTAATTCTCGTCAAAACAGACATGCATATGTCCAACATAATATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTAATTCTCGTCAAAACAGACATGCATATGTCCAACATAATATG  887

seq1  TTCAAGTGGCCAAGTTTCATTTTTTCCCCCACCTCCCATGAAAGTTGAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTGGCCAAGTTTCATTTTTTCCCCCACCTCCCATGAAAGTTGAGG  937

seq1  TAGGACTTTTTTATGCCTATATCATGGTTGACCTGAAGTCCAGGCTGCAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTTTTTTATGCCTATATCATGGTTGACCTGAAGTCCAGGCTGCAG  987

seq1  AGGTACTGCATGCCATTCAAGAACATACAGAGTTAAATGTACTAATATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGCATGCCATTCAAGAACATACAGAGTTAAATGTACTAATATTT  1037

seq1  TTATATGGTAAAGCTGGGGCTCGGGGTAGGGAATCAGGTTCTTGAAAAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGTAAAGCTGGGGCTCGGGGTAGGGAATCAGGTTCTTGAAAAAC  1087

seq1  AGAAAAGTACCCACCAGTTAGTTTTATTGAATTC  1131
      ||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTACCCACCAGTTAGTTTTATTGAATTC  1121


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