BAC Information

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BAC

Clone NameB6Ng01-230O16
Chromosome13 (Build37)
Map Location 18,216,451 - 18,217,595
singlet/doubletsinglet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230O16.bB6Ng01-230O16.g
ACCGA043655GA043656
length1,2291,109
definitionB6Ng01-230O16.b B6Ng01-230O16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttattgattcttgatcttatagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggggatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagattaggt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccataaa
aaaataaatttatgaaattcctaggcaaatggatggacctggagggtatc
atcctgagtgaggtaacccaatcacaaaggaactcgcacaatatgtactc
actgataagtggatattagcccagaaacttaggatacccaagatataaga
tacaacttgccaaacgcatgaaattcaagaagaacgaagaccaaagtgtg
gacactttaccctttcttagaaatgagaacaaacacccatggaaggagtt
acagagacaaaatttggagccgtgacaaaaggatggaccatctagtgatt
gccatatgcaggatccatcccataatcagcttccaaatgctgacaccagt
gcatacactagcaagattttgctgaaaggacccagatatagctctcttct
tgtgagactatgcggggggcctagcaaacacagaagtggatgctcacagg
tcagctattggatggtcaacaccgggcccccatgaggagctagagaatta
ccaaggagcttatgggaacttgcacctattagggtgaacaacaatatgaa
cttagcagtacccgggagcctcttgtctctagcctgccattatgtatcaa
aagaattgcctagtcgccatcacttgcaagagagaaggcccaattggaaa
ctttgtcaaaacttatatatatgtgctgc
gaattcaccctgccaggcaatcaggcaggcaggcaggaggcccaccctgg
cagcggactcagtgtaagactgttctttctcaattctccccccagacaca
ccatcctgagaagccactttttcctaccacaggaagcccaagagaacact
atagctagcagtctgacagccaaactgaaccctggccttttgtatcctgc
caggtttgaaaagctggacatcacccctaaaagtgcccagaagatcaagc
cggtgcttgagcggtggatggctgaggctgaggcccgccatcgagcaggt
atgcagaatctcacggaatttattgggagtgagccatccaaaaagcgcaa
gcggcgcacctccttcacgccccaggcccttgagatcctcaatgcccact
ttgagaagaacacacacccctcagggcaggaaatgaccgagattgctgag
aagctaaactacgaccgggaagtagttagagtttggttctgcaataagag
acaagctctaaagaacacaatcaaacgcttaaagcaacacgagcccacct
cggcggcccccctggagcccttagcagattctccagaagaaaactgttag
acacacccattcatggtcggaaggaagcatcacagaaactgagcactacc
ctgaatctccacaaaaaaagaaaggaaggaaagaagaaagaagaaagaat
ttaaagacttgccccagtcatcatctcccttgtatgtaaaagactaaaaa
acaaaaaactaccaaatgggcagaatggtttatacgtgtccgttggtttt
ccaaaaggaaaaaaaaaaaaagaattttaaatttttaaacaagaaaaatg
ccacatgaaggagtatgtggtaggatcattcgctcccccacctgcctcct
aacgccgggtttttttaaagcaaaccaaataaccacttattcttttctgt
atatgatgaaaatgtgaacacctttaggaaaagaaaaaaaaaactaaccc
aaaaatataaataataataagacaaccaacaacacacacaacaaaaccgc
accaaactcgtatctgtcaagcgatgcaagtctgccactgaggagcactg
catcttcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18216451_18217595
seq2: B6Ng01-230O16.g_69_1177 (reverse)

seq1  CTGAAGGGATGCAGTGCTCCTCCAGGTGGCAGACTTGCATTCGCTTTGAA  50
      |||||  |||||||||||||||   |||||||||||||| ||||||   |
seq2  CTGAA--GATGCAGTGCTCCTC--AGTGGCAGACTTGCA-TCGCTT--GA  43

seq1  CAGATACGAGTTTGTGTTGGCGGGTTTTTTTGTTTGTTTGTTTGTTTGTT  100
      |||||||||||||| ||  ||||    |||||         |||| ||| 
seq2  CAGATACGAGTTTG-GT--GCGG----TTTTG---------TTGTGTGTG  77

seq1  TTGTTTTGTTTTTGTTCTTTTATTTATTTATTTATTATTTTTTTGGTTTA  150
      |||       || ||| | |||     |||||  |||| ||||||| |||
seq2  TTG-------TTGGTTGTCTTA-----TTATTATTTATATTTTTGGGTTA  115

seq1  GTTTTTTTTTCTTTTTCCTTAAAAGGTGTTCACATTTTCATCATATACAG  200
      ||||||||||  |||||||  |||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTCTTTTCCT--AAAGGTGTTCACATTTTCATCATATACAG  163

seq1  AAAAGAATAAGTGGTTATTTGGTTTGCTTTAAAAAAA-CCGGCGTTAGGG  249
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  AAAAGAATAAGTGGTTATTTGGTTTGCTTTAAAAAAACCCGGCGTTA-GG  212

seq1  AGGCAGGTGGGGGAGCGAATGATCCTACCACATACTCCTTCATGTGGCAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGGGGAGCGAATGATCCTACCACATACTCCTTCATGTGGCAT  262

seq1  TTTTCTTGTTTAAAAATTTAAAATTC-TTTTTTTTTTTTCCTTTTGGAAA  348
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTCTTGTTTAAAAATTTAAAATTCTTTTTTTTTTTTTCCTTTTGGAAA  312

seq1  ACCAACGGACACGTATAAACCATTCTGCCCATTTGGTAGTTTTTTGTTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGGACACGTATAAACCATTCTGCCCATTTGGTAGTTTTTTGTTTT  362

seq1  TTAGTCTTTTACATACAAGGGAGATGATGACTGGGGCAAGTCTTTAAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTTACATACAAGGGAGATGATGACTGGGGCAAGTCTTTAAATT  412

seq1  CTTTCTTCTTTCTTCTTTCCTTCCTTTCTTTTTTTGTGGAGATTCAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTCTTTCTTCTTTCCTTCCTTTCTTTTTTTGTGGAGATTCAGGGT  462

seq1  AGTGCTCAGTTTCTGTGATGCTTCCTTCCGACCATGAATGGGTGTGTCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGTTTCTGTGATGCTTCCTTCCGACCATGAATGGGTGTGTCTA  512

seq1  ACAGTTTTCTTCTGGAGAATCTGCTAAGGGCTCCAGGGGGGCCGCCGAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTCTTCTGGAGAATCTGCTAAGGGCTCCAGGGGGGCCGCCGAGG  562

seq1  TGGGCTCGTGTTGCTTTAAGCGTTTGATTGTGTTCTTTAGAGCTTGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCGTGTTGCTTTAAGCGTTTGATTGTGTTCTTTAGAGCTTGTCTC  612

seq1  TTATTGCAGAACCAAACTCTAACTACTTCCCGGTCGTAGTTTAGCTTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAGAACCAAACTCTAACTACTTCCCGGTCGTAGTTTAGCTTCTC  662

seq1  AGCAATCTCGGTCATTTCCTGCCCTGAGGGGTGTGTGTTCTTCTCAAAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTCGGTCATTTCCTGCCCTGAGGGGTGTGTGTTCTTCTCAAAGT  712

seq1  GGGCATTGAGGATCTCAAGGGCCTGGGGCGTGAAGGAGGTGCGCCGCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGAGGATCTCAAGGGCCTGGGGCGTGAAGGAGGTGCGCCGCTTG  762

seq1  CGCTTTTTGGATGGCTCACTCCCAATAAATTCCGTGAGATTCTGCATACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTTTGGATGGCTCACTCCCAATAAATTCCGTGAGATTCTGCATACC  812

seq1  TGCTCGATGGCGGGCCTCAGCCTCAGCCATCCACCGCTCAAGCACCGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGATGGCGGGCCTCAGCCTCAGCCATCCACCGCTCAAGCACCGGCT  862

seq1  TGATCTTCTGGGCACTTTTAGGGGTGATGTCCAGCTTTTCAAACCTGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTCTGGGCACTTTTAGGGGTGATGTCCAGCTTTTCAAACCTGGCA  912

seq1  GGATACAAAAGGCCAGGGTTCAGTTTGGCTGTCAGACTGCTAGCTATAGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAAAAGGCCAGGGTTCAGTTTGGCTGTCAGACTGCTAGCTATAGT  962

seq1  GTTCTCTTGGGCTTCCTGTGGTAGGAAAAAGTGGCTTCTCAGGATGGTGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTGGGCTTCCTGTGGTAGGAAAAAGTGGCTTCTCAGGATGGTGT  1012

seq1  GTCTGGGGGGAGAATTGAGAAAGAACAGTCTTACACTGAGTCCGCTGCCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGGGGGAGAATTGAGAAAGAACAGTCTTACACTGAGTCCGCTGCCA  1062

seq1  GGGTGGGCCTCCTGCCTGCCTGCCTGATTGCCTGGCAGGGTGAATTC  1145
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCCTCCTGCCTGCCTGCCTGATTGCCTGGCAGGGTGAATTC  1109