BAC Information

Click to search

BAC

Clone NameB6Ng01-231L19
Chromosome13 (Build37)
Map Location 21,166,795 - 21,317,191
singlet/doubletdoublet
Overlap geneOlfr1369-ps1, Olfr42, Olfr1368, Trim27
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370
Downstream geneGpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231L19.bB6Ng01-231L19.g
ACCGA044252GA044253
length1,0851,054
definitionB6Ng01-231L19.b B6Ng01-231L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,166,795 - 21,167,906)(21,316,165 - 21,317,191)
sequence
gaattctggcaccacagaaaacaaagcaaaggaggggcattcacgcctta
taaagctgtgggactttgcgctccatgtagataataaatctcagtggaaa
tttcttggcaaagggcattataaaaattccccttgtgagtatacttcctt
ataatcttcttatgaagataaaaatcaaataataaactataggacgtgtt
gtggagaatacattggggctaaaacaatttaaaacaaacaaataaataaa
caaaaattcttttaaaaatctcagaaaattgtcatggctcatgaggaaaa
ctaaaggattattatgatatcaaaatctagctatcttctatctatacttt
tctccaagtatcagtctaaaaatccctgctgtgctaatcatatagtaagc
gtacatctttgtaagaatggaagaggcccacccattacaatatttttaag
aaactaaaagactgttgcctcttaatatttctttcacaatatcctagcat
atcatagactttttacttgatcttactttgatgatattaaaattcttctt
ttaaaaataaaatgcaatggatagtacatttgacttctaaaagttaaaaa
cattgtatcatttatgtacaatgatgttccaatcatccattaaattagtc
aatattaagtacccagtatatgtcatctgttctttttaactgtttgtttc
aaacaaacactgaagaacaatatccccaaaattcctttgatgagacctat
tctaatacagggaatagttgtgtttattctcacagttttgaaagatcaag
tgctagaataataggggtgtaatttaataatttaaaatgataaacaatca
aaacaatattgtggaatgatttcatataaccctttctgacctgaattctt
ttttttttttttttccctgaactcaagtttatttgttgtttgttttttaa
agcacataaagatacaggatacactatacacatctcatactgattcatgc
tctatgacttctacttgctcaacatgattatttctgctacattcttgacc
agtcattaaccacttccagcacaacaggatagaca
gaattcagagatccaccccacctttgttaagcacaggcaaagctgggtgg
gacctgtccctgaaattaccactcctaccatgcctaggcttgaacctgga
cctaaagtctgcctttcaagcaaaaccaaaaaacttagctgtgtaggatc
ttgcccttcgatcacctaaatttccttatctcattccttagtatcattct
gacaagctggctcatagtacatccctccgaggaagagcatgactgtatgt
gcagtattatacaaacaagccttgtgcccacagcaaccatcaatacttgt
ggaggcccatgccctacgggccctgtaccaggggcaggaaccatgtgatt
ccaccccttacatcaacaagcatcctgggggtggtgacacatgcctttag
tcccagtacctggaaggtagaggcaggaagatttctgtgagtttgaggcc
agtctggtctatagagttagttccagaatagccagggctacacaaagaaa
ccttaaaaaaaaaaaaaaagtaaaatatactttctcattaaaacaaacaa
acaaaaacactagtctcaaaaaattgtgagagaagttttttttgtttctg
tttattctgttaagggtggctaacctgccaaggtcaatattccatatatt
ccatattccataaatgtctctcactttgtaaaacattttttgtccattgt
tgttatataagactaagtaactctggctggcctcaaacttatagagatct
gcctgactttgtctcccaagtgctggcactaaaggctgtacaccatgcct
ggcttttttttttttttttgacaaggactttcttgtaactcagattggtt
gtacaactcagtatgcagcttgaagatgattctagccctccatcttccag
gtacgaggactggaagtttggaaatcaccacctggtttgaaaatgtcgat
ttttgttttgttttaagtctgactatctggacctttggcctagcctggat
ttgattgtggaatgggctgacatgattcataagagatcatctgcctctgc
tttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21166795_21167906
seq2: B6Ng01-231L19.b_47_1131

seq1  GAATTCTGGCACCACAGAAAACAAAGCAAAGGAGGGGCATTCACGCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCACCACAGAAAACAAAGCAAAGGAGGGGCATTCACGCCTTA  50

seq1  TAAAGCTGTGGGACTTTGCGCTCCATGTAGATAATAAATCTCAGTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGTGGGACTTTGCGCTCCATGTAGATAATAAATCTCAGTGGAAA  100

seq1  TTTCTTGGCAAAGGGCATTATAAAAATTCCCCTTGTGAGTATACTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCAAAGGGCATTATAAAAATTCCCCTTGTGAGTATACTTCCTT  150

seq1  ATAATCTTCTTATGAAGATAAAAATCAAATAATAAACTATAGGACGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTTCTTATGAAGATAAAAATCAAATAATAAACTATAGGACGTGTT  200

seq1  GTGGAGAATACATTGGGGCTAAAACAATTTAAAACAAACAAATAAATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAATACATTGGGGCTAAAACAATTTAAAACAAACAAATAAATAAA  250

seq1  CAAAAATTCTTTTAAAAATCTCAGAAAATTGTCATGGCTCATGAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATTCTTTTAAAAATCTCAGAAAATTGTCATGGCTCATGAGGAAAA  300

seq1  CTAAAGGATTATTATGATATCAAAATCTAGCTATCTTCTATCTATACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGATTATTATGATATCAAAATCTAGCTATCTTCTATCTATACTTT  350

seq1  TCTCCAAGTATCAGTCTAAAAATCCCTGCTGTGCTAATCATATAGTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGTATCAGTCTAAAAATCCCTGCTGTGCTAATCATATAGTAAGC  400

seq1  GTACATCTTTGTAAGAATGGAAGAGGCCCACCCATTACAATATTTTTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATCTTTGTAAGAATGGAAGAGGCCCACCCATTACAATATTTTTAAG  450

seq1  AAACTAAAAGACTGTTGCCTCTTAATATTTCTTTCACAATATCCTAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAAGACTGTTGCCTCTTAATATTTCTTTCACAATATCCTAGCAT  500

seq1  ATCATAGACTTTTTACTTGATCTTACTTTGATGATATTAAAATTCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGACTTTTTACTTGATCTTACTTTGATGATATTAAAATTCTTCTT  550

seq1  TTAAAAATAAAATGCAATGGATAGTACATTTGACTTCTAAAAGTTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATAAAATGCAATGGATAGTACATTTGACTTCTAAAAGTTAAAAA  600

seq1  CATTGTATCATTTATGTACAATGATGTTCCAATCATCCATTAAATTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATCATTTATGTACAATGATGTTCCAATCATCCATTAAATTAGTC  650

seq1  AATATTAAGTACCCAGTATATGTCATCTGTTCTTTTTAACTGTTTGTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAAGTACCCAGTATATGTCATCTGTTCTTTTTAACTGTTTGTTTC  700

seq1  AAACAAACACTGAAGAACAATATCCCCAAAATTCCTTTGATGAGACCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACTGAAGAACAATATCCCCAAAATTCCTTTGATGAGACCTAT  750

seq1  TCTAATACAGGGAATAGTTGTGTTTATTCTCACAGTTTTGAAAGATCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACAGGGAATAGTTGTGTTTATTCTCACAGTTTTGAAAGATCAAG  800

seq1  TGCTAGAATAATAGGGGTGTAATTTAAATAATTTAAAATGATAAAACAAA  850
      ||||||||||||||||||||||||| |||||||||||||||||||   ||
seq2  TGCTAGAATAATAGGGGTGTAATTT-AATAATTTAAAATGATAAA--CAA  847

seq1  TCAAAACAATATTGTGGAATGATTTCATATAACCCTTTCTGACCTGAAAT  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAAACAATATTGTGGAATGATTTCATATAACCCTTTCTGACCTG-AAT  896

seq1  TCTTTTTTTTTTTTTTTTCCCTGAACTCAAGTTTATTTTGTTTGTTTGTT  950
      ||||||||||||||||||||||||||||||||||||||   ||||||| |
seq2  TCTTTTTTTTTTTTTTTTCCCTGAACTCAAGTTTATTT--GTTGTTTG-T  943

seq1  TTTTTAAAGCACATAAAGATACAGGATACACTTATACACATCTTCATTAC  1000
      ||||||||||||||||||||||||||||||| |||||||||| ||| |||
seq2  TTTTTAAAGCACATAAAGATACAGGATACAC-TATACACATC-TCA-TAC  990

seq1  TGTATCATGCTCTTAAATGACTTCCTTACTTGCCTCCAAACCATGATTTA  1050
      ||  |||||||||   ||||||||  |||||| |||   | |||||||  
seq2  TGATTCATGCTCT---ATGACTTC--TACTTG-CTC---AACATGATT--  1029

seq1  ATTTCTGCTACATTCTTGACACAGTCATTTAACCAACTTCCCAGCACAAA  1100
      |||||||||||||||||||| |||||| |||||| |||| ||||||| ||
seq2  ATTTCTGCTACATTCTTGAC-CAGTCA-TTAACC-ACTT-CCAGCAC-AA  1074

seq1  CAGGATAAGACA  1112
      |||||| |||||
seq2  CAGGAT-AGACA  1085

seq1: chr13_21316165_21317191
seq2: B6Ng01-231L19.g_90_1123 (reverse)

seq1  GAAAGCAGAGGCAGATGGATCTCTTATGAATTCATGGTCAGCCCATTCCA  50
      |||||||||||||||| ||||||||||||| |||| ||||||||||||||
seq2  GAAAGCAGAGGCAGAT-GATCTCTTATGAA-TCAT-GTCAGCCCATTCCA  47

seq1  CATATCAAAATCCAGGCTAG--CCAAGGT-CAGATAGTCAGAACCTAAAA  97
      || ||| |||||||||||||  | ||||| ||||||||||| || |||||
seq2  CA-ATC-AAATCCAGGCTAGGCCAAAGGTCCAGATAGTCAG-ACTTAAAA  94

seq1  CAAA--CAAAATCAACATTTTCAAACCAGGT-GTGATTT-CAAACTTCCA  143
      ||||   |||||| ||||||||||||||||| ||||||| ||||||||||
seq2  CAAAACAAAAATCGACATTTTCAAACCAGGTGGTGATTTCCAAACTTCCA  144

seq1  GTCCTCGTACTTGGAAGATGGA-GGCTAGAATCATCTTC-AGCTGCATAC  191
      |||||||||| ||||||||||| |||||||||||||||| ||||||||||
seq2  GTCCTCGTACCTGGAAGATGGAGGGCTAGAATCATCTTCAAGCTGCATAC  194

seq1  TGAG-TGTACAACCAATCTGAGTTACA--GAAGTCCTTGTC-AAAAAAAA  237
      |||| ||||||||||||||||||||||   ||||||||||| ||||||||
seq2  TGAGTTGTACAACCAATCTGAGTTACAAGAAAGTCCTTGTCAAAAAAAAA  244

seq1  AAAAAAAGCCAGGCATGGTGTACAGCCTTTAGTGCCAGCACTTGGGAGAC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCAGGCATGGTGTACAGCCTTTAGTGCCAGCACTTGGGAGAC  294

seq1  AAAGTCAGGCAGATCTCTATAAGTTTGAGGCCAGCCAGAGTTACTTAGTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGCAGATCTCTATAAGTTTGAGGCCAGCCAGAGTTACTTAGTC  344

seq1  TTATATAACAACAATGGACAAAAAATGTTTTACAAAGTGAGAGACATTTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAACAACAATGGACAAAAAATGTTTTACAAAGTGAGAGACATTTA  394

seq1  TGGAATATGGAATATATGGAATATTGACCTTGGCAGGTTAGCCACCCTTA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATGGAATATATGGAATATTGACCTTGGCAGGTTAGCCACCCTTA  444

seq1  ACAGAATAAACAGAAACAAAAAAAACTTCTCTCACAATTTTTTGAGACTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAAACAGAAACAAAAAAAACTTCTCTCACAATTTTTTGAGACTA  494

seq1  GTGTTTTTGTTTGTTTGTTTTAATGAGAAAGTATATTTTACTTTTTTTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTGTTTGTTTGTTTTAATGAGAAAGTATATTTTACTTTTTTTTT  544

seq1  TTTTTTAAGGTTTCTTTGTGTAGCCCTGGCTATTCTGGAACTAACTCTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGGTTTCTTTGTGTAGCCCTGGCTATTCTGGAACTAACTCTAT  594

seq1  AGACCAGACTGGCCTCAAACTCACAGAAATCTTCCTGCCTCTACCTTCCA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGACTGGCCTCAAACTCACAGAAATCTTCCTGCCTCTACCTTCCA  644

seq1  GGTACTGGGACTAAAGGCATGTGTCACCACCCCCAGGATGCTTGTTGATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGGGACTAAAGGCATGTGTCACCACCCCCAGGATGCTTGTTGATG  694

seq1  TAAGGGGTGGAATCACATGGTTCCTGCCCCTGGTACAGGGCCCGTAGGGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGTGGAATCACATGGTTCCTGCCCCTGGTACAGGGCCCGTAGGGC  744

seq1  ATGGGCCTCCACAAGTATTGATGGTTGCTGTGGGCACAAGGCTTGTTTGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCTCCACAAGTATTGATGGTTGCTGTGGGCACAAGGCTTGTTTGT  794

seq1  ATAATACTGCACATACAGTCATGCTCTTCCTCGGAGGGATGTACTATGAG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATACTGCACATACAGTCATGCTCTTCCTCGGAGGGATGTACTATGAG  844

seq1  CCAGCTTGTCAGAATGATACTAAGGAATGAGATAAGGAAATTTAGGTGAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTGTCAGAATGATACTAAGGAATGAGATAAGGAAATTTAGGTGAT  894

seq1  CGAAGGGCAAGATCCTACACAGCTAAGTTTTTTGGTTTTGCTTGAAAGGC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGGCAAGATCCTACACAGCTAAGTTTTTTGGTTTTGCTTGAAAGGC  944

seq1  AGACTTTAGGTCCAGGTTCAAGCCTAGGCATGGTAGGAGTGGTAATTTCA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTAGGTCCAGGTTCAAGCCTAGGCATGGTAGGAGTGGTAATTTCA  994

seq1  GGGACAGGTCCCACCCAGCTTTGCCTGTGCTTAACAAAGG  1027
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGGTCCCACCCAGCTTTGCCTGTGCTTAACAAAGG  1034